Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23397 Vaccinium macrocarpon HOM05D003155 ORTHO05D012487 5.1e-66 254.2 125 100.0
vmacro12338 Vaccinium macrocarpon HOM05D003155 ORTHO05D004342 1.9e-36 156.0 113 73.5
Actinidia11005 Actinidia chinensis HOM05D003155 ORTHO05D004342 1.2e-27 126.7 123 60.2
CSS0028730 Camellia sinensis var. sinensis HOM05D003155 ORTHO05D004342 2.9e-24 115.5 136 55.1
Hma1.2p1_1785F.1_g302280 Hydrangea macrophylla HOM05D003155 ORTHO05D004342 5.0e-21 104.8 132 51.5
CSS0047504 Camellia sinensis var. sinensis HOM05D003155 ORTHO05D004342 8.6e-21 104.0 139 48.2
Potri.002G198600 Populus trichocarpa HOM05D003155 ORTHO05D004342 1.5e-20 103.2 125 53.6
TAR362G0238 Trochodendron aralioides HOM05D003155 ORTHO05D004342 9.5e-20 100.5 130 48.5
Sabra02G0159100 Salix brachista HOM05D003155 ORTHO05D004342 4.7e-19 98.2 125 52.0
Hund00057 Selenicereus undatus HOM05D003155 ORTHO05D004342 1.4e-18 96.7 127 48.0
Manes.05G001800 Manihot esculenta HOM05D003155 ORTHO05D004342 2.3e-18 95.9 127 50.4
Nn3g21630 Nelumbo nucifera HOM05D003155 ORTHO05D004342 2.3e-18 95.9 133 47.4
Thecc.01G310300 Theobroma cacao HOM05D003155 ORTHO05D004342 2.3e-18 95.9 132 45.5
HanXRQChr17g0540071 Helianthus annuus HOM05D003155 ORTHO05D004342 6.8e-18 94.4 127 48.0
Dinv33099 Davidia involucrata HOM05D003155 ORTHO05D004342 8.9e-18 94.0 137 45.3
Lj3A1064T100 Lonicera japonica HOM05D003155 ORTHO05D004342 1.5e-17 93.2 132 44.7
CAN.G630.85 Capsicum annuum HOM05D003155 ORTHO05D004342 2.0e-17 92.8 134 48.5
Sc08g0003390 Simmondsia chinensis HOM05D003155 ORTHO05D004342 2.0e-17 92.8 132 45.5
GSVIVG01028086001 Vitis vinifera HOM05D003155 ORTHO05D004342 2.0e-17 92.8 138 44.2
Potri.014G123000 Populus trichocarpa HOM05D003155 ORTHO05D004342 2.6e-17 92.4 125 48.8
Sopen04g025920 Solanum pennellii HOM05D003155 ORTHO05D004342 2.6e-17 92.4 133 48.1
Atru.chr10.1937 Acer truncatum HOM05D003155 ORTHO05D004342 3.4e-17 92.0 134 45.5
Nitab4.5_0002557g0030 Nicotiana tabacum HOM05D003155 ORTHO05D004342 3.4e-17 92.0 134 47.0
TAR362G0957 Trochodendron aralioides HOM05D003155 ORTHO05D004342 3.4e-17 92.0 115 52.2
CiPaw.07G115200 Carya illinoinensis HOM05D003155 ORTHO05D004342 4.4e-17 91.7 132 47.0
Haze_05010 Corylus avellana HOM05D003155 ORTHO05D004342 4.4e-17 91.7 127 48.8
HanXRQChr06g0174841 Helianthus annuus HOM05D003155 ORTHO05D004342 4.4e-17 91.7 124 46.8
Manes.01G225900 Manihot esculenta HOM05D003155 ORTHO05D004342 4.4e-17 91.7 131 50.4
Nitab4.5_0000317g0060 Nicotiana tabacum HOM05D003155 ORTHO05D004342 5.8e-17 91.3 134 46.3
Prupe.1G528600 Prunus persica HOM05D003155 ORTHO05D004342 5.8e-17 91.3 136 51.5
Hund06387 Selenicereus undatus HOM05D003155 ORTHO05D004342 5.8e-17 91.3 134 44.0
TWI53G0211 Tripterygium wilfordii HOM05D003155 ORTHO05D012487 5.8e-17 91.3 121 47.9
GSVIVG01011409001 Vitis vinifera HOM05D003155 ORTHO05D004342 5.8e-17 91.3 138 44.9
Cpa.g.sc8.158 Carica papaya HOM05D003155 ORTHO05D004342 9.8e-17 90.5 130 45.4
PGSC0003DMG400023032 Solanum tuberosum HOM05D003155 ORTHO05D004342 9.8e-17 90.5 134 47.0
CiPaw.13G147200 Carya illinoinensis HOM05D003155 ORTHO05D004342 1.3e-16 90.1 133 46.6
Gohir.A11G111100 Gossypium hirsutum HOM05D003155 ORTHO05D004342 2.2e-16 89.4 131 44.3
Cfa005833 Carpinus fangiana HOM05D003155 ORTHO05D004342 2.9e-16 89.0 115 50.4
PSO675G7447 Papaver somniferum HOM05D003155 ORTHO05D004342 2.9e-16 89.0 122 45.1
AUR62010120 Chenopodium quinoa HOM05D003155 ORTHO05D004342 3.7e-16 88.6 100 53.0
Migut.M01874 Erythranthe guttata HOM05D003155 ORTHO05D004342 3.7e-16 88.6 134 45.5
Nn4g25655 Nelumbo nucifera HOM05D003155 ORTHO05D012487 3.7e-16 88.6 118 44.9
CAN.G405.2 Capsicum annuum HOM05D003155 ORTHO05D004342 8.3e-16 87.4 134 45.5
Gorai.007G124500 Gossypium raimondii HOM05D003155 ORTHO05D004342 8.3e-16 87.4 129 45.7
Peaxi162Scf00591g00412 Petunia axillaris HOM05D003155 ORTHO05D004342 8.3e-16 87.4 121 47.1
Solyc04g058090.3 Solanum lycopersicum HOM05D003155 ORTHO05D004342 8.3e-16 87.4 134 46.3
EL10Ac9g21469 Beta vulgaris HOM05D003155 ORTHO05D004342 1.4e-15 86.7 80 58.8
Gohir.D11G116300 Gossypium hirsutum HOM05D003155 ORTHO05D004342 1.4e-15 86.7 129 43.4
AUR62013115 Chenopodium quinoa HOM05D003155 ORTHO05D004342 1.9e-15 86.3 98 53.1
MBI19_g29997_MAGBIO Magnolia biondii HOM05D003155 ORTHO05D004342 2.4e-15 85.9 102 53.9
TWI09G1633 Tripterygium wilfordii HOM05D003155 ORTHO05D004342 2.4e-15 85.9 121 47.1
Cfa005838 Carpinus fangiana HOM05D003155 ORTHO05D004342 3.2e-15 85.5 129 46.5
Cc00_g15210 Coffea canephora HOM05D003155 ORTHO05D004342 3.2e-15 85.5 131 40.5
Duzib138G0641 Durio zibethinus HOM05D003155 ORTHO05D004342 3.2e-15 85.5 129 43.4
PSO541G5346 Papaver somniferum HOM05D003155 ORTHO05D004342 3.2e-15 85.5 125 44.0
SGA_v2.0_scaffold223G42841 Striga asiatica HOM05D003155 ORTHO05D004342 3.2e-15 85.5 137 45.3
CANSAT25G1273 Cannabis sativa HOM05D003155 ORTHO05D004342 4.1e-15 85.1 67 67.2
FAN19G1072 Fragaria x ananassa HOM05D003155 ORTHO05D004342 4.1e-15 85.1 134 44.8
Lsat_1_v5_gn_3_29341 Lactuca sativa HOM05D003155 ORTHO05D004342 4.1e-15 85.1 119 46.2
SalBow2G2017 Salvia bowleyana HOM05D003155 ORTHO05D004342 4.1e-15 85.1 129 45.0
ECA246G1648 Erigeron canadensis HOM05D003155 ORTHO05D001887 5.4e-15 84.7 126 46.8
ECA248G1812 Erigeron canadensis HOM05D003155 ORTHO05D004342 5.4e-15 84.7 122 53.3
Zm00001eb284260 Zea mays HOM05D003155 ORTHO05D004342 5.4e-15 84.7 71 62.0
arahy.Tifrunner.gnm1.ann1.PM89VL Arachis hypogaea HOM05D003155 ORTHO05D004342 7.0e-15 84.3 118 47.5
Peaxi162Scf00066g00524 Petunia axillaris HOM05D003155 ORTHO05D004342 9.2e-15 84.0 130 45.4
Phvul.002G273500 Phaseolus vulgaris HOM05D003155 ORTHO05D004342 9.2e-15 84.0 114 48.2
SalBow8G2165 Salvia bowleyana HOM05D003155 ORTHO05D004342 9.2e-15 84.0 127 44.1
VMungo0251G2281 Vigna mungo HOM05D003155 ORTHO05D004342 9.2e-15 84.0 114 47.4
TPR.G37349 Trifolium pratense HOM05D003155 ORTHO05D004342 1.2e-14 83.6 119 46.2
Glyma.05G192900 Glycine max HOM05D003155 ORTHO05D004342 1.6e-14 83.2 115 47.0
Lj5g0009987 Lotus japonicus HOM05D003155 ORTHO05D004342 1.6e-14 83.2 117 48.7
RcHm_v2.0_Chr2g0117751 Rosa chinensis HOM05D003155 ORTHO05D004342 1.6e-14 83.2 137 45.3
TWI53G0331 Tripterygium wilfordii HOM05D003155 ORTHO05D012487 1.6e-14 83.2 119 46.2
SGA_v2.0_scaffold1G00231 Striga asiatica HOM05D003155 ORTHO05D004342 2.1e-14 82.8 126 42.9
THA.LOC104817470 Tarenaya hassleriana HOM05D003155 ORTHO05D004342 2.1e-14 82.8 64 65.6
FvH4_1g23040 Fragaria vesca HOM05D003155 ORTHO05D004342 2.7e-14 82.4 134 44.0
Sed0004341 Sechium edule HOM05D003155 ORTHO05D004342 2.7e-14 82.4 115 44.3
arahy.Tifrunner.gnm1.ann1.DJPQ45 Arachis hypogaea HOM05D003155 ORTHO05D004342 3.5e-14 82.0 119 47.9
ATR0693G061 Amborella trichopoda HOM05D003155 ORTHO05D004342 4.6e-14 81.6 57 71.9
MSTRG.7527 Avicennia marina HOM05D003155 ORTHO05D004342 6.0e-14 81.3 136 40.4
CARHR165020 Cardamine hirsuta HOM05D003155 ORTHO05D004342 6.0e-14 81.3 86 51.2
COL.COLO4_23262 Corchorus olitorius HOM05D003155 ORTHO05D004342 6.0e-14 81.3 67 65.7
Glyma.08G001000 Glycine max HOM05D003155 ORTHO05D004342 6.0e-14 81.3 120 47.5
Lalb_Chr08g0238231 Lupinus albus HOM05D003155 ORTHO05D004342 7.8e-14 80.9 53 77.4
Sp5g07410 Schrenkiella parvula HOM05D003155 ORTHO05D004342 7.8e-14 80.9 71 62.0
BcaB02g07704 Brassica carinata HOM05D003155 ORTHO05D004342 1.0e-13 80.5 71 57.7
Ca_14922_v3 Cicer arietinum L. HOM05D003155 ORTHO05D004342 1.0e-13 80.5 53 77.4
Ca_22781_v3 Cicer arietinum L. HOM05D003155 ORTHO05D004342 1.0e-13 80.5 53 77.4
ClCG01G001560 Citrullus lanatus HOM05D003155 ORTHO05D004342 1.0e-13 80.5 54 74.1
MELO3C005781.2 Cucumis melo HOM05D003155 ORTHO05D004342 1.0e-13 80.5 54 74.1
CsaV3_5G001710 Cucumis sativus L. HOM05D003155 ORTHO05D004342 1.0e-13 80.5 54 74.1
Medtr8g093860 Medicago truncatula HOM05D003155 ORTHO05D004342 1.0e-13 80.5 118 47.5
Oeu040091.1 Olea europaea HOM05D003155 ORTHO05D004342 1.0e-13 80.5 54 74.1
CDE11G0169 Ceratophyllum demersum HOM05D003155 ORTHO05D004342 1.3e-13 80.1 79 58.2
FAN23G2124 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.3e-13 80.1 64 62.5
FAN26G2094 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.3e-13 80.1 64 62.5
FAN28G3015 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.3e-13 80.1 64 62.5
Lj4g0014336 Lotus japonicus HOM05D003155 ORTHO05D004342 1.3e-13 80.1 117 49.6
MD08G1194300 Malus domestica HOM05D003155 ORTHO05D004342 1.3e-13 80.1 137 44.5
AL5G36130 Arabidopsis lyrata HOM05D003155 ORTHO05D004342 1.7e-13 79.7 74 56.8
MD08G1194700 Malus domestica HOM05D003155 ORTHO05D004342 1.7e-13 79.7 137 44.5
Aqoxy5G00145 Aquilegia oxysepala HOM05D003155 ORTHO05D004342 2.3e-13 79.3 109 45.9
Carub.0005s2164 Capsella rubella HOM05D003155 ORTHO05D004342 2.3e-13 79.3 64 62.5
DCAR_024227 Daucus carota HOM05D003155 ORTHO05D004342 2.3e-13 79.3 137 40.9
Eucgr.L02454 Eucalyptus grandis HOM05D003155 ORTHO05D004342 2.3e-13 79.3 107 47.7
Eucgr.L03298 Eucalyptus grandis HOM05D003155 ORTHO05D012487 2.3e-13 79.3 107 47.7
Psat7g045040 Pisum sativum HOM05D003155 ORTHO05D004342 2.3e-13 79.3 42 90.5
MD15G1382400 Malus domestica HOM05D003155 ORTHO05D004342 3.0e-13 79.0 137 42.3
Aa31sc33G80 Aethionema arabicum HOM05D003155 ORTHO05D004342 3.9e-13 78.6 86 54.7
Eucgr.A02767 Eucalyptus grandis HOM05D003155 ORTHO05D004342 3.9e-13 78.6 107 46.7
AT3G55010 Arabidopsis thaliana HOM05D003155 ORTHO05D004342 8.6e-13 77.4 112 41.1
Cc11_g04240 Coffea canephora HOM05D003155 ORTHO05D004342 8.6e-13 77.4 84 51.2
BraA09t40256Z Brassica rapa HOM05D003155 ORTHO05D004342 1.1e-12 77.0 66 59.1
Pp3c5_3030 Physcomitrium patens HOM05D003155 ORTHO05D004342 1.1e-12 77.0 62 62.9
BcaC08g44717 Brassica carinata HOM05D003155 ORTHO05D004342 1.5e-12 76.6 67 62.7
Mapoly0003s0273 Marchantia polymorpha HOM05D003155 ORTHO05D004342 1.5e-12 76.6 69 60.9
Oeu008950.2 Olea europaea HOM05D003155 ORTHO05D004342 1.5e-12 76.6 114 43.0
unitig_37.g12904 Utricularia gibba HOM05D003155 ORTHO05D004342 1.5e-12 76.6 68 57.4
BcaB01g00135 Brassica carinata HOM05D003155 ORTHO05D004342 2.5e-12 75.9 64 60.9
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 2.5e-12 75.9 64 60.9
Ah.01g001460 Amaranthus hybridus HOM05D003155 ORTHO05D003938 3.3e-12 75.5 44 79.5
SMO116G0007 Selaginella moellendorffii HOM05D003155 ORTHO05D004342 3.3e-12 75.5 54 68.5
SEGI_27039 Sequoiadendron giganteum HOM05D003155 ORTHO05D004342 3.3e-12 75.5 56 64.3
DCAR_027274 Daucus carota HOM05D003155 ORTHO05D004342 4.3e-12 75.1 61 63.9
CBR_g16871 Chara braunii HOM05D003155 ORTHO05D004342 5.6e-12 74.7 67 58.2
Pp3c6_25750 Physcomitrium patens HOM05D003155 ORTHO05D004342 5.6e-12 74.7 65 56.9
Thhalv10010436m.g Eutrema salsugineum HOM05D003155 ORTHO05D004342 7.3e-12 74.3 62 59.7
AagrBONN_evm.TU.Sc2ySwM_368.880 Anthoceros agrestis HOM05D003155 ORTHO05D004342 9.5e-12 73.9 67 55.2
A09p48030 Brassica napus HOM05D003155 ORTHO05D004342 9.5e-12 73.9 113 43.4
C06p22560 Brassica napus HOM05D003155 ORTHO05D004342 9.5e-12 73.9 68 60.3
BolC6t37446H Brassica oleracea HOM05D003155 ORTHO05D004342 9.5e-12 73.9 68 60.3
HPP92_001922 Vanilla planifolia HOM05D003155 ORTHO05D004342 9.5e-12 73.9 105 47.6
PGR066G0004 Punica granatum HOM05D003155 ORTHO05D004342 1.2e-11 73.6 53 69.8
PGR142G1043 Punica granatum HOM05D003155 ORTHO05D004342 1.2e-11 73.6 53 69.8
A07p22400 Brassica napus HOM05D003155 ORTHO05D004342 1.6e-11 73.2 65 58.5
BcaNung04653 Brassica carinata HOM05D003155 ORTHO05D004342 3.6e-11 72.0 64 59.4
BraA07t29916Z Brassica rapa HOM05D003155 ORTHO05D004342 4.7e-11 71.6 47 72.3
Thhalv10018710m.g Eutrema salsugineum HOM05D003155 ORTHO05D004342 4.7e-11 71.6 95 49.5
Os03g0831500 Oryza sativa ssp. japonica HOM05D003155 ORTHO05D004342 4.7e-11 71.6 102 38.2
AagrBONN_evm.TU.Sc2ySwM_344.1369 Anthoceros agrestis HOM05D003155 ORTHO05D004342 8.1e-11 70.9 59 59.3
Medtr5g093890 Medicago truncatula HOM05D003155 ORTHO05D004342 8.1e-11 70.9 52 71.2
TPR.G14992 Trifolium pratense HOM05D003155 ORTHO05D410879 8.1e-11 70.9 93 48.4
BolC8t50632H Brassica oleracea HOM05D003155 ORTHO05D004342 1.4e-10 70.1 117 43.6
Sp5g14230 Schrenkiella parvula HOM05D003155 ORTHO05D004342 1.4e-10 70.1 53 62.3
C08p30250 Brassica napus HOM05D003155 ORTHO05D004342 2.3e-10 69.3 65 56.9
SMO232G0073 Selaginella moellendorffii HOM05D003155 ORTHO05D004342 3.1e-10 68.9 54 63.0
Lsat_1_v5_gn_8_28960 Lactuca sativa HOM05D003155 ORTHO05D004342 8.9e-10 67.4 38 84.2
PRCOL_00001570 Prasinoderma coloniale HOM05D003155 ORTHO05D004342 8.9e-10 67.4 53 64.2
PGR119G0649 Punica granatum HOM05D003155 ORTHO05D004342 8.9e-10 67.4 53 62.3
TPR.G31811 Trifolium pratense HOM05D003155 ORTHO05D004342 8.9e-10 67.4 75 50.7
TPR.G22009 Trifolium pratense HOM05D003155 ORTHO05D012487 1.2e-09 67.0 36 86.1
Cc11_g04200 Coffea canephora HOM05D003155 ORTHO05D012487 7.5e-09 64.3 50 68.0
Dinv10072 Davidia involucrata HOM05D003155 ORTHO05D004342 1.7e-08 63.2 46 71.7
Cre07.g318750 Chlamydomonas reinhardtii HOM05D003155 ORTHO05D004342 3.7e-08 62.0 74 50.0
MD05G1254600 Malus domestica HOM05D003155 ORTHO05D004342 4.6e-06 55.1 119 35.3
MD08G1194800 Malus domestica HOM05D003155 ORTHO05D004342 6.0e-06 54.7 54 53.7
MD08G1195100 Malus domestica HOM05D003155 ORTHO05D004342 6.0e-06 54.7 54 53.7
MD08G1193800 Malus domestica HOM05D003155 ORTHO05D004342 7.8e-06 54.3 54 55.6
MD15G1382500 Malus domestica HOM05D003155 ORTHO05D004342 7.8e-06 54.3 35 71.4


User provided reference genes

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