Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.0e-252 873.2 480 100.0
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 5.8e-251 870.5 478 100.0
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.6e-137 491.1 475 58.7
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.8e-136 489.6 475 58.5
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.8e-134 481.9 472 64.8
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.9e-132 476.9 475 64.0
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-125 454.1 478 60.3
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.4e-125 451.4 494 60.9
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.8e-120 436.4 474 62.0
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.2e-116 421.8 473 61.1
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.7e-115 419.9 413 61.5
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.4e-113 411.8 485 52.6
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.6e-110 403.3 476 58.2
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 4.1e-103 379.4 469 53.9
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 6.5e-101 372.1 478 48.3
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 6.5e-101 372.1 481 53.0
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 9.4e-100 368.2 478 48.1
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-99 367.5 476 56.1
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-99 367.1 473 54.1
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 6.3e-96 355.5 481 50.7
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 8.2e-96 355.1 478 49.2
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-95 354.0 473 53.7
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 3.5e-94 349.7 479 50.3
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 3.8e-93 346.3 474 45.4
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.1e-92 344.7 481 43.7
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 1.5e-92 344.4 489 45.8
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 5.5e-92 342.4 488 45.5
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.2e-91 341.3 478 49.4
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 1.6e-91 340.9 485 44.7
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 1.6e-91 340.9 485 43.7
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 2.1e-91 340.5 481 44.5
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.7e-91 340.1 485 45.2
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.0e-91 338.6 486 44.9
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 8.8e-90 335.1 475 45.5
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 1.5e-89 334.3 482 45.2
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 1.5e-89 334.3 475 49.3
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 5.7e-89 332.4 487 44.8
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 9.7e-89 331.6 476 48.1
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.7e-88 330.9 485 44.3
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.7e-88 329.7 485 44.1
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 4.8e-88 329.3 493 48.5
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.4e-87 327.8 482 49.2
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.8e-87 327.4 478 43.1
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.0e-87 325.5 486 43.6
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 7.0e-87 325.5 474 44.5
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 1.6e-86 324.3 478 43.5
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 2.0e-86 323.9 479 43.4
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 2.7e-86 323.6 477 44.9
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.0e-85 321.6 483 42.4
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 1.0e-85 321.6 480 45.2
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.9e-85 320.1 496 42.3
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.9e-85 320.1 496 42.3
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 6.5e-85 318.9 478 41.0
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 8.5e-85 318.5 477 44.4
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 8.5e-85 318.5 355 62.0
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 1.1e-84 318.2 412 50.5
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.9e-84 317.4 474 49.6
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-83 314.7 474 48.5
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 6.1e-83 312.4 474 48.7
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.8e-82 310.8 474 43.0
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 1.8e-82 310.8 481 44.3
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 2.3e-82 310.5 483 48.9
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 9.8e-81 305.1 478 41.8
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-79 301.2 414 45.7
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 3.1e-79 300.1 474 40.1
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 4.1e-79 299.7 464 42.0
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 5.9e-78 295.8 479 39.2
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 7.7e-78 295.4 499 41.9
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.2e-77 293.9 480 46.7
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 2.9e-77 293.5 479 46.3
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 3.8e-77 293.1 476 47.5
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 5.0e-77 292.7 491 44.4
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 5.0e-77 292.7 403 47.1
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 3.2e-76 290.0 479 39.0
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 3.2e-76 290.0 475 45.9
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 5.5e-76 289.3 476 45.4
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.2e-76 288.9 303 54.8
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 9.4e-76 288.5 479 40.1
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.1e-75 287.3 330 50.3
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 2.1e-75 287.3 488 41.2
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-75 287.3 292 65.4
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 2.1e-75 287.3 483 45.8
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 8.0e-75 285.4 486 41.4
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 2.3e-74 283.9 475 47.2
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 3.0e-74 283.5 483 46.0
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.6e-73 280.4 484 44.6
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.4e-73 279.6 477 46.8
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 5.7e-73 279.3 480 40.2
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 4.9e-72 276.2 481 39.7
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.1e-71 275.0 479 41.8
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 1.7e-69 267.7 480 38.5
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 2.5e-68 263.8 492 42.1
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.5e-68 263.8 486 42.6
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.0e-66 258.5 487 38.0
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.8e-66 257.7 360 45.8
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.3e-66 257.3 484 41.7
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 8.9e-66 255.4 489 40.5
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.7e-65 252.7 471 43.7
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 3.7e-64 250.0 404 43.6
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 6.4e-64 249.2 485 40.8
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 6.4e-64 249.2 485 40.8
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 8.3e-64 248.8 411 39.9
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.0e-61 241.9 483 37.3
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 1.0e-61 241.9 496 38.1
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 1.1e-60 238.4 295 46.8
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 1.1e-60 238.4 494 36.6
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 6.2e-59 232.6 475 41.1
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 6.2e-59 232.6 334 43.7
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 8.0e-59 232.3 333 43.8
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 1.4e-58 231.5 330 47.0
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 1.8e-58 231.1 493 36.3
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 2.3e-58 230.7 489 37.0
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 5.2e-58 229.6 438 40.9
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 2.2e-56 224.2 499 36.5
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.9e-56 223.8 240 54.6
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 8.3e-56 222.2 227 52.4
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 2.0e-54 217.6 425 38.1
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 1.1e-52 211.8 315 48.6
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 7.3e-52 209.1 416 37.0
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.8e-50 204.5 505 34.3
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.8e-50 204.5 337 39.5
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 4.0e-50 203.4 433 35.1
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 1.5e-49 201.4 477 33.5
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 5.8e-49 199.5 278 52.5
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 3.5e-46 190.3 482 37.8
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 8.1e-43 179.1 174 52.3
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.4e-41 173.3 258 43.8
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 1.1e-39 168.7 470 31.7
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 4.1e-39 166.8 291 40.9
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.1e-36 158.7 221 45.2
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.5e-28 131.0 172 48.8
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.6e-28 129.8 320 36.2
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.8e-27 127.5 158 50.0
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.4e-26 125.2 166 61.4
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.4e-26 125.2 98 66.3
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 3.1e-26 124.0 268 35.8
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.1e-22 111.3 234 33.8
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 2.3e-21 107.8 406 28.1
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.5e-20 105.1 164 55.5
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.3e-19 102.1 87 63.2
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 8.1e-19 99.4 127 45.7
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 1.4e-18 98.6 201 40.3
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.5e-17 93.6 229 33.2
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.8e-16 90.5 98 55.1
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 1.2e-14 85.5 150 33.3
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.7e-14 84.3 149 36.2
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-13 82.4 112 40.2
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.3e-13 82.0 71 62.0
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 6.5e-08 63.2 73 49.3
SalBow5G3486 Salvia bowleyana HOM05D001905 ORTHO05D001820 1.4e-07 62.0 232 25.9
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-06 58.9 80 45.0
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 3.5e-06 57.4 209 25.8


User provided reference genes

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