Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.9e-209 732.3 365 100.0
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.2e-177 624.8 360 87.5
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.8e-159 566.2 355 81.4
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 1.2e-152 543.5 353 79.0
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 8.3e-141 504.2 292 87.3
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 6.0e-139 498.0 353 71.7
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.0e-139 498.0 354 73.7
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.0e-139 498.0 354 73.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 3.9e-138 495.4 355 72.4
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 5.6e-137 491.5 354 70.9
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 7.3e-137 491.1 354 73.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.2e-136 490.3 356 71.3
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 6.2e-136 488.0 353 72.2
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.1e-135 487.3 355 71.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.4e-135 486.9 352 70.5
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.3e-135 486.1 361 69.0
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.2e-134 483.8 355 73.0
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 1.5e-134 483.4 348 70.4
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.6e-134 482.6 354 71.8
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.7e-133 479.9 353 70.3
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 4.9e-133 478.4 363 70.0
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-132 477.2 353 70.5
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.4e-132 476.9 359 69.1
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 2.4e-132 476.1 348 69.5
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 3.2e-132 475.7 348 69.8
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 7.1e-132 474.6 366 68.6
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.2e-131 473.8 366 68.6
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 4.6e-131 471.9 365 68.2
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.0e-130 470.7 369 68.0
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.7e-130 469.9 279 83.5
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 1.7e-130 469.9 366 67.8
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 3.9e-130 468.8 353 69.1
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.9e-130 468.8 355 67.9
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 6.6e-130 468.0 350 70.9
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 3.3e-129 465.7 353 70.3
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 7.3e-129 464.5 357 68.3
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 7.3e-129 464.5 352 67.9
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 3.1e-127 459.1 359 66.3
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.0e-126 456.4 355 67.6
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 2.6e-126 456.1 356 68.8
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 5.8e-126 454.9 353 68.6
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 7.6e-126 454.5 355 66.5
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 9.9e-126 454.1 298 79.5
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.7e-125 453.4 354 66.9
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 8.4e-125 451.1 355 66.5
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.2e-124 448.7 353 66.9
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 4.2e-124 448.7 352 67.0
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.2e-123 447.2 365 64.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 7.8e-123 444.5 342 66.7
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 7.8e-123 444.5 353 66.6
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.7e-122 443.4 352 66.2
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 6.6e-122 441.4 365 63.3
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 8.7e-122 441.0 369 63.1
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 8.7e-122 441.0 336 67.6
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 8.7e-122 441.0 362 65.2
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.9e-121 439.9 355 66.2
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 4.3e-121 438.7 292 74.7
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 4.3e-121 438.7 365 63.3
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 5.6e-121 438.3 361 63.7
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.3e-121 438.0 365 63.8
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.3e-120 437.2 354 65.8
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.3e-120 437.2 360 64.7
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.1e-120 436.4 353 65.4
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 3.6e-120 435.6 360 63.6
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 4.8e-120 435.3 347 65.7
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 6.2e-120 434.9 359 65.2
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.1e-119 434.1 349 65.9
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.1e-119 434.1 360 63.6
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.4e-119 433.7 363 62.5
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 2.4e-119 433.0 358 65.6
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 5.3e-119 431.8 353 64.9
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 5.3e-119 431.8 303 73.9
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 6.9e-119 431.4 342 65.2
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 2.6e-118 429.5 353 65.4
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.8e-118 428.3 292 75.0
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 7.6e-118 427.9 341 66.3
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 9.9e-118 427.6 337 65.3
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 3.8e-117 425.6 355 64.5
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 4.9e-117 425.2 355 64.5
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 6.4e-117 424.9 294 75.2
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 6.4e-117 424.9 355 63.9
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 6.4e-117 424.9 335 66.6
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.4e-116 423.7 298 76.2
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.9e-116 423.3 346 65.9
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.4e-116 422.9 353 64.3
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.4e-116 422.9 351 64.7
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.2e-115 420.6 353 64.3
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 2.1e-115 419.9 360 63.9
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.7e-115 419.5 337 65.6
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 3.5e-115 419.1 351 62.4
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 7.9e-115 417.9 360 62.2
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.0e-114 417.5 355 63.4
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.7e-114 416.8 353 62.9
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.3e-114 416.4 349 65.3
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 5.1e-114 415.2 327 66.7
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 6.9e-111 404.8 357 60.8
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.7e-109 400.2 357 60.8
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-108 397.5 339 62.8
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 4.2e-108 395.6 321 65.7
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 3.5e-107 392.5 358 60.9
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 3.5e-107 392.5 355 60.8
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 7.9e-107 391.3 344 61.6
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 2.3e-106 389.8 354 60.2
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.1e-106 388.7 282 71.3
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.3e-105 386.0 284 70.1
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 1.4e-103 380.6 344 61.6
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 2.4e-103 379.8 348 60.1
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 4.2e-100 369.0 348 57.8
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 4.6e-99 365.5 346 56.6
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.5e-97 360.5 273 66.7
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 7.4e-97 358.2 246 71.5
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 9.6e-97 357.8 240 73.3
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 6.2e-96 355.1 275 69.1
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 3.1e-95 352.8 324 59.3
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.2e-93 346.7 237 77.6
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.9e-92 343.6 355 56.3
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 6.1e-91 338.6 246 68.7
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 7.4e-89 331.6 266 68.4
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 2.2e-88 330.1 352 54.3
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.3e-85 320.9 237 71.3
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.3e-85 320.9 293 61.4
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.8e-85 319.3 354 50.0
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 5.0e-85 318.9 294 58.8
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 8.5e-85 318.2 332 54.8
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.9e-78 295.4 217 71.4
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.1e-75 285.4 226 67.7
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.0e-74 283.1 222 68.0
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.0e-73 280.4 210 71.0
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.4e-73 279.3 256 59.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.8e-72 276.6 273 56.4
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 9.1e-71 271.6 187 70.6
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.5e-70 269.6 249 60.2
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.0e-66 258.1 306 47.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 1.2e-62 244.6 221 61.5
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.3e-61 241.1 257 48.6
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.7e-61 240.7 223 60.5
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 2.2e-61 240.4 197 57.9
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 6.1e-59 232.3 140 79.3
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 5.2e-58 229.2 197 64.5
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 7.5e-57 225.3 230 56.5
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.1e-55 221.5 190 66.3
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.7e-53 214.2 256 44.9
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 9.4e-52 208.4 136 75.7
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.4e-47 193.7 242 48.3
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.5e-41 174.5 276 39.5
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.7e-40 171.0 142 62.7
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.3e-37 161.4 265 35.1
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.3e-37 160.6 172 59.9
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 3.9e-37 159.8 177 46.9
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 2.8e-35 153.7 187 50.8
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 6.8e-34 149.1 280 42.1
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.4e-33 146.7 136 56.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 9.8e-33 145.2 163 50.3
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 1.7e-32 144.4 124 66.9
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.2e-32 144.1 188 42.6
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 8.3e-32 142.1 179 48.6
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 8.3e-32 142.1 179 48.6
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.9e-31 141.0 179 48.6
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.0e-30 137.5 88 76.1
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 1.5e-28 131.3 182 41.2
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 6.2e-27 125.9 82 72.0
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.1e-22 110.9 79 65.8
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 8.6e-21 105.5 121 46.3
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 3.3e-20 103.6 108 57.4
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 3.1e-18 97.1 149 39.6
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 9.9e-17 92.0 91 47.3
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.7e-16 90.1 75 72.0
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 6.4e-16 89.4 95 44.2
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.1e-15 86.7 94 43.6
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 9.2e-15 85.5 163 33.1
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 2.1e-14 84.3 89 43.8
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 2.1e-14 84.3 89 43.8
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 2.1e-14 84.3 177 36.2
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 6.0e-14 82.8 136 34.6
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.0e-13 82.0 127 37.0
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.3e-13 81.6 89 43.8
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 1.3e-13 81.6 89 43.8
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 6.6e-13 79.3 91 40.7
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.9e-12 77.8 88 43.2
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 9.6e-12 75.5 92 41.3
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 9.6e-12 75.5 92 41.3
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 1.4e-10 71.6 86 54.7
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.4e-10 71.6 97 49.5
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 4.0e-10 70.1 96 49.0
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 3.2e-07 60.5 88 40.9
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 5.4e-07 59.7 71 49.3


User provided reference genes

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