Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23034 Vaccinium macrocarpon HOM05D002058 ORTHO05D003758 7.4e-46 186.8 92 100.0
Dinv19485 Davidia involucrata HOM05D002058 ORTHO05D003758 9.8e-22 106.7 73 78.1
CSS0024356 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 2.2e-21 105.5 73 75.3
CSS0049201 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 2.8e-21 105.1 66 83.3
Dinv00699 Davidia involucrata HOM05D002058 ORTHO05D003758 3.7e-21 104.8 73 76.7
CSS0038320 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 4.8e-21 104.4 73 74.0
vmacro02939 Vaccinium macrocarpon HOM05D002058 ORTHO05D003758 4.8e-21 104.4 61 85.2
CiPaw.03G134200 Carya illinoinensis HOM05D002058 ORTHO05D003758 1.4e-20 102.8 64 82.8
Cc07_g16270 Coffea canephora HOM05D002058 ORTHO05D003758 2.0e-19 99.0 73 72.6
RcHm_v2.0_Chr2g0116521 Rosa chinensis HOM05D002058 ORTHO05D003758 1.7e-18 95.9 71 66.2
arahy.Tifrunner.gnm1.ann1.91QE12 Arachis hypogaea HOM05D002058 ORTHO05D003758 2.2e-18 95.5 75 66.7
arahy.Tifrunner.gnm1.ann1.A4G237 Arachis hypogaea HOM05D002058 ORTHO05D003758 2.2e-18 95.5 75 66.7
arahy.Tifrunner.gnm1.ann1.MN9CK9 Arachis hypogaea HOM05D002058 ORTHO05D003758 2.2e-18 95.5 75 66.7
arahy.Tifrunner.gnm1.ann1.Q3FUVQ Arachis hypogaea HOM05D002058 ORTHO05D003758 2.2e-18 95.5 75 66.7
GSVIVG01022229001 Vitis vinifera HOM05D002058 ORTHO05D003758 2.9e-18 95.1 74 67.6
CANSAT01G1563 Cannabis sativa HOM05D002058 ORTHO05D003758 3.8e-18 94.7 71 70.4
Lalb_Chr12g0203521 Lupinus albus HOM05D002058 ORTHO05D003758 3.8e-18 94.7 74 66.2
QL06p032113 Quercus lobata HOM05D002058 ORTHO05D003758 5.0e-18 94.4 64 76.6
FAN26G2241 Fragaria x ananassa HOM05D002058 ORTHO05D003758 6.5e-18 94.0 65 72.3
Ciclev10026159m.g Citrus clementina HOM05D002058 ORTHO05D003758 8.5e-18 93.6 64 73.4
RcHm_v2.0_Chr2g0116491 Rosa chinensis HOM05D002058 ORTHO05D003758 8.5e-18 93.6 71 66.2
SGA_v2.0_scaffold2G01295 Striga asiatica HOM05D002058 ORTHO05D003758 8.5e-18 93.6 73 63.0
Ca_17695_v3 Cicer arietinum L. HOM05D002058 ORTHO05D003758 3.2e-17 91.7 74 66.2
FAN28G1652 Fragaria x ananassa HOM05D002058 ORTHO05D003758 3.2e-17 91.7 65 70.8
MD15G1332900 Malus domestica HOM05D002058 ORTHO05D003758 3.2e-17 91.7 64 71.9
Lalb_Chr13g0296211 Lupinus albus HOM05D002058 ORTHO05D003758 5.5e-17 90.9 74 63.5
Eucgr.I00321 Eucalyptus grandis HOM05D002058 ORTHO05D003758 7.2e-17 90.5 71 67.6
MD01G1019500 Malus domestica HOM05D002058 ORTHO05D003758 7.2e-17 90.5 64 70.3
Haze_25044 Corylus avellana HOM05D002058 ORTHO05D003758 9.5e-17 90.1 64 73.4
Manes.13G076034 Manihot esculenta HOM05D002058 ORTHO05D003758 9.5e-17 90.1 74 64.9
Lsat_1_v5_gn_3_54081 Lactuca sativa HOM05D002058 ORTHO05D003758 1.2e-16 89.7 66 69.7
Lj1g0011600 Lotus japonicus HOM05D002058 ORTHO05D003758 1.2e-16 89.7 74 64.9
Potri.005G084600 Populus trichocarpa HOM05D002058 ORTHO05D003758 1.2e-16 89.7 70 64.3
VMungo1309G0601 Vigna mungo HOM05D002058 ORTHO05D003758 1.2e-16 89.7 70 64.3
AL4G11260 Arabidopsis lyrata HOM05D002058 ORTHO05D003758 1.6e-16 89.4 71 63.4
Prupe.6G172800 Prunus persica HOM05D002058 ORTHO05D003758 1.6e-16 89.4 71 64.8
BcaB06g27797 Brassica carinata HOM05D002058 ORTHO05D003758 2.1e-16 89.0 71 60.6
AUR62003305 Chenopodium quinoa HOM05D002058 ORTHO05D003758 2.1e-16 89.0 73 65.8
AUR62016280 Chenopodium quinoa HOM05D002058 ORTHO05D003758 2.1e-16 89.0 73 65.8
AUR62044024 Chenopodium quinoa HOM05D002058 ORTHO05D003758 2.1e-16 89.0 73 65.8
Hund19655 Selenicereus undatus HOM05D002058 ORTHO05D003758 2.1e-16 89.0 71 64.8
Ah.03g141350 Amaranthus hybridus HOM05D002058 ORTHO05D003758 2.8e-16 88.6 65 70.8
Carub.0004s0108 Capsella rubella HOM05D002058 ORTHO05D003758 2.8e-16 88.6 75 58.7
Migut.H02438 Erythranthe guttata HOM05D002058 ORTHO05D003758 2.8e-16 88.6 76 61.8
CARHR113020 Cardamine hirsuta HOM05D002058 ORTHO05D003758 3.6e-16 88.2 72 59.7
PGR004G2752 Punica granatum HOM05D002058 ORTHO05D003758 3.6e-16 88.2 72 63.9
Glyma.08G141500 Glycine max HOM05D002058 ORTHO05D003758 4.7e-16 87.8 74 62.2
Oeu028369.1 Olea europaea HOM05D002058 ORTHO05D003758 4.7e-16 87.8 73 63.0
Lj4g0006731 Lotus japonicus HOM05D002058 ORTHO05D003758 6.1e-16 87.4 74 62.2
Phvul.002G264800 Phaseolus vulgaris HOM05D002058 ORTHO05D003758 6.1e-16 87.4 74 60.8
MSTRG.2530 Avicennia marina HOM05D002058 ORTHO05D003758 8.0e-16 87.0 71 62.0
CsaV3_2G017660 Cucumis sativus L. HOM05D002058 ORTHO05D003758 1.0e-15 86.7 74 62.2
ECA246G3653 Erigeron canadensis HOM05D002058 ORTHO05D003758 1.0e-15 86.7 66 68.2
arahy.Tifrunner.gnm1.ann1.Q0PIRU Arachis hypogaea HOM05D002058 ORTHO05D003758 1.4e-15 86.3 74 60.8
HanXRQChr15g0477681 Helianthus annuus HOM05D002058 ORTHO05D003758 1.4e-15 86.3 73 63.0
AT2G21940 Arabidopsis thaliana HOM05D002058 ORTHO05D003758 1.8e-15 85.9 71 60.6
arahy.Tifrunner.gnm1.ann1.05U4MR Arachis hypogaea HOM05D002058 ORTHO05D003758 1.8e-15 85.9 74 60.8
arahy.Tifrunner.gnm1.ann1.JNA5NA Arachis hypogaea HOM05D002058 ORTHO05D003758 2.3e-15 85.5 74 59.5
arahy.Tifrunner.gnm1.ann1.WB0Z4U Arachis hypogaea HOM05D002058 ORTHO05D003758 2.3e-15 85.5 74 59.5
VMungo0251G3029 Vigna mungo HOM05D002058 ORTHO05D003758 2.3e-15 85.5 74 59.5
DCAR_001370 Daucus carota HOM05D002058 ORTHO05D003758 3.0e-15 85.1 61 68.9
Thhalv10000262m.g Eutrema salsugineum HOM05D002058 ORTHO05D003758 3.0e-15 85.1 74 58.1
Atru.chr4.367 Acer truncatum HOM05D002058 ORTHO05D003758 4.0e-15 84.7 71 60.6
Sabra07G0068000 Salix brachista HOM05D002058 ORTHO05D003758 4.0e-15 84.7 70 62.9
MELO3C020958.2 Cucumis melo HOM05D002058 ORTHO05D003758 5.2e-15 84.3 63 71.4
Sed0006299 Sechium edule HOM05D002058 ORTHO05D003758 5.2e-15 84.3 63 69.8
THA.LOC104807723 Tarenaya hassleriana HOM05D002058 ORTHO05D003758 5.2e-15 84.3 70 58.6
ClCG01G016150 Citrullus lanatus HOM05D002058 ORTHO05D003758 6.8e-15 84.0 71 62.0
Glyma.04G219300 Glycine max HOM05D002058 ORTHO05D003758 6.8e-15 84.0 70 60.0
THA.LOC104824858 Tarenaya hassleriana HOM05D002058 ORTHO05D003758 8.8e-15 83.6 73 58.9
HanXRQChr07g0189951 Helianthus annuus HOM05D002058 ORTHO05D003758 1.2e-14 83.2 63 65.1
Rhsim10G0150100 Rhododendron simsii HOM05D002058 ORTHO05D003758 1.2e-14 83.2 73 67.1
Glyma.05G183700 Glycine max HOM05D002058 ORTHO05D003758 2.0e-14 82.4 74 58.1
TPR.G2181 Trifolium pratense HOM05D002058 ORTHO05D003758 2.0e-14 82.4 71 62.0
CsaV3_6G042420 Cucumis sativus L. HOM05D002058 ORTHO05D003758 2.6e-14 82.0 71 59.2
Sc22g0001550 Simmondsia chinensis HOM05D002058 ORTHO05D003758 2.6e-14 82.0 74 58.1
Thecc.01G113000 Theobroma cacao HOM05D002058 ORTHO05D003758 3.4e-14 81.6 71 60.6
Aqoxy6G00470 Aquilegia oxysepala HOM05D002058 ORTHO05D003758 4.4e-14 81.3 71 62.0
PSO541G4291 Papaver somniferum HOM05D002058 ORTHO05D003758 4.4e-14 81.3 71 60.6
Potri.007G081000 Populus trichocarpa HOM05D002058 ORTHO05D003758 4.4e-14 81.3 70 61.4
BcaNung00872 Brassica carinata HOM05D002058 ORTHO05D003758 5.7e-14 80.9 63 61.9
Manes.12G142800 Manihot esculenta HOM05D002058 ORTHO05D003758 5.7e-14 80.9 73 57.5
PSO675G1375 Papaver somniferum HOM05D002058 ORTHO05D003758 5.7e-14 80.9 71 60.6
Sed0006253 Sechium edule HOM05D002058 ORTHO05D003758 5.7e-14 80.9 71 60.6
Sp7g36340 Schrenkiella parvula HOM05D002058 ORTHO05D003758 7.5e-14 80.5 63 61.9
TWI53G1219 Tripterygium wilfordii HOM05D002058 ORTHO05D003758 7.5e-14 80.5 71 64.8
Atru.chr7.2034_Atru.chr7.2035 Acer truncatum HOM05D002058 ORTHO05D003758 9.8e-14 80.1 70 57.1
Duzib147G0681 Durio zibethinus HOM05D002058 ORTHO05D003758 9.8e-14 80.1 71 59.2
SalBow6G0726 Salvia bowleyana HOM05D002058 ORTHO05D003758 9.8e-14 80.1 63 65.1
BolC1t00605H Brassica oleracea HOM05D002058 ORTHO05D003758 1.3e-13 79.7 63 63.5
Duzib264G1213 Durio zibethinus HOM05D002058 ORTHO05D003758 1.7e-13 79.3 71 60.6
FAN19G1247 Fragaria x ananassa HOM05D002058 ORTHO05D003758 1.7e-13 79.3 55 70.9
FAN23G2242 Fragaria x ananassa HOM05D002058 ORTHO05D003758 1.7e-13 79.3 55 70.9
BcaNung05810 Brassica carinata HOM05D002058 ORTHO05D003758 2.8e-13 78.6 63 60.3
BolC1t00059H Brassica oleracea HOM05D002058 ORTHO05D003758 2.8e-13 78.6 63 60.3
COL.COLO4_11010 Corchorus olitorius HOM05D002058 ORTHO05D003758 3.7e-13 78.2 71 57.7
Oeu031975.1 Olea europaea HOM05D002058 ORTHO05D003758 3.7e-13 78.2 66 62.1
Zm00001eb069000 Zea mays HOM05D002058 ORTHO05D003758 3.7e-13 78.2 70 57.1
CAN.G347.5 Capsicum annuum HOM05D002058 ORTHO05D003758 4.9e-13 77.8 72 58.3
CDE04G1180 Ceratophyllum demersum HOM05D002058 ORTHO05D003758 8.3e-13 77.0 71 57.7
AL7G11580 Arabidopsis lyrata HOM05D002058 ORTHO05D003758 1.1e-12 76.6 63 58.7
C01p00580 Brassica napus HOM05D002058 ORTHO05D003758 1.1e-12 76.6 63 58.7
Gohir.D11G233600 Gossypium hirsutum HOM05D002058 ORTHO05D003758 1.1e-12 76.6 71 59.2
Gorai.007G244500 Gossypium raimondii HOM05D002058 ORTHO05D003758 1.1e-12 76.6 71 59.2
BcaC02g08751 Brassica carinata HOM05D002058 ORTHO05D003758 1.4e-12 76.3 71 54.9
C04p51060 Brassica napus HOM05D002058 ORTHO05D003758 1.4e-12 76.3 71 54.9
BolC4t26699H Brassica oleracea HOM05D002058 ORTHO05D003758 1.4e-12 76.3 71 54.9
BraA04t17289Z Brassica rapa HOM05D002058 ORTHO05D003758 1.4e-12 76.3 71 54.9
CARHR247190 Cardamine hirsuta HOM05D002058 ORTHO05D003758 1.4e-12 76.3 63 58.7
Aa31LG7G14710 Aethionema arabicum HOM05D002058 ORTHO05D003758 1.8e-12 75.9 69 56.5
Gohir.A12G255300 Gossypium hirsutum HOM05D002058 ORTHO05D003758 1.8e-12 75.9 64 65.6
Gorai.008G274900 Gossypium raimondii HOM05D002058 ORTHO05D003758 1.8e-12 75.9 64 65.6
MBI05_g00332_MAGBIO Magnolia biondii HOM05D002058 ORTHO05D003758 2.4e-12 75.5 72 56.9
Actinidia15623 Actinidia chinensis HOM05D002058 ORTHO05D003758 4.1e-12 74.7 71 53.5
AT4G39540 Arabidopsis thaliana HOM05D002058 ORTHO05D003758 4.1e-12 74.7 64 56.2
Carub.0007s0141 Capsella rubella HOM05D002058 ORTHO05D003758 4.1e-12 74.7 64 56.2
Cfa002756 Carpinus fangiana HOM05D002058 ORTHO05D003758 4.1e-12 74.7 54 72.2
Gohir.A11G198100 Gossypium hirsutum HOM05D002058 ORTHO05D003758 4.1e-12 74.7 71 57.7
Sabra05G0069700 Salix brachista HOM05D002058 ORTHO05D003758 4.1e-12 74.7 68 60.3
unitig_899.g14607 Utricularia gibba HOM05D002058 ORTHO05D003758 4.1e-12 74.7 73 49.3
A01p00420 Brassica napus HOM05D002058 ORTHO05D003758 5.4e-12 74.3 63 58.7
A04p16530 Brassica napus HOM05D002058 ORTHO05D003758 5.4e-12 74.3 71 53.5
BraA01t00050Z Brassica rapa HOM05D002058 ORTHO05D003758 5.4e-12 74.3 63 58.7
Gohir.D12G256700 Gossypium hirsutum HOM05D002058 ORTHO05D003758 5.4e-12 74.3 64 64.1
Aqoxy6G00741 Aquilegia oxysepala HOM05D002058 ORTHO05D003758 7.0e-12 73.9 73 53.4
MBI02_g18924_MAGBIO Magnolia biondii HOM05D002058 ORTHO05D003758 7.0e-12 73.9 70 58.6
Zm00001eb254940 Zea mays HOM05D002058 ORTHO05D003758 7.0e-12 73.9 70 55.7
Os06g0225800 Oryza sativa ssp. japonica HOM05D002058 ORTHO05D003758 9.2e-12 73.6 70 57.1
RcHm_v2.0_Chr6g0259311 Rosa chinensis HOM05D002058 ORTHO05D003758 9.2e-12 73.6 61 57.4
QL02p035413 Quercus lobata HOM05D002058 ORTHO05D003758 1.2e-11 73.2 64 60.9
GSVIVG01013668001 Vitis vinifera HOM05D002058 ORTHO05D003758 1.2e-11 73.2 64 56.2
Ciclev10002077m.g Citrus clementina HOM05D002058 ORTHO05D003758 1.6e-11 72.8 64 57.8
TAR381G1363 Trochodendron aralioides HOM05D002058 ORTHO05D003758 1.6e-11 72.8 61 63.9
HPP92_013369 Vanilla planifolia HOM05D002058 ORTHO05D003758 2.0e-11 72.4 70 55.7
SGA_v2.0_scaffold51G18754 Striga asiatica HOM05D002058 ORTHO05D003758 2.7e-11 72.0 64 54.7
Zm00001eb194410 Zea mays HOM05D002058 ORTHO05D003758 3.5e-11 71.6 70 54.3
Aa31LG6G15670 Aethionema arabicum HOM05D002058 ORTHO05D003758 4.5e-11 71.2 70 50.0
ClCG02G001040 Citrullus lanatus HOM05D002058 ORTHO05D003758 7.8e-11 70.5 53 69.8
Hma1.2p1_0276F.1_g111080 Hydrangea macrophylla HOM05D002058 ORTHO05D003758 7.8e-11 70.5 71 50.7
Solyc04g051860.3 Solanum lycopersicum HOM05D002058 ORTHO05D003758 7.8e-11 70.5 71 54.9
Sopen04g023190 Solanum pennellii HOM05D002058 ORTHO05D003758 1.0e-10 70.1 71 54.9
Atru.chr13.1953 Acer truncatum HOM05D002058 ORTHO05D003758 1.3e-10 69.7 65 56.9
Cfa018248 Carpinus fangiana HOM05D002058 ORTHO05D003758 1.3e-10 69.7 63 60.3
HPP92_013371 Vanilla planifolia HOM05D002058 ORTHO05D003758 1.3e-10 69.7 70 54.3
C01p06090 Brassica napus HOM05D002058 ORTHO05D003758 2.3e-10 68.9 63 57.1
Glyma.06G146632 Glycine max HOM05D002058 ORTHO05D003758 2.3e-10 68.9 62 59.7
SEGI_03566 Sequoiadendron giganteum HOM05D002058 ORTHO05D003758 2.3e-10 68.9 70 47.1
CSS0000213 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 2.9e-10 68.6 65 53.8
SHI11688 Sapria himalayana HOM05D002058 ORTHO05D003758 5.0e-10 67.8 81 48.1
CiPaw.15G010500 Carya illinoinensis HOM05D002058 ORTHO05D003758 8.6e-10 67.0 64 56.2
Dinv41011 Davidia involucrata HOM05D002058 ORTHO05D003758 8.6e-10 67.0 64 53.1
CSS0010657 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 2.5e-09 65.5 64 56.2
CSS0016053 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 2.5e-09 65.5 64 56.2
CiPaw.16G006300 Carya illinoinensis HOM05D002058 ORTHO05D003758 3.3e-09 65.1 64 54.7
PSO170G0472 Papaver somniferum HOM05D002058 ORTHO05D003758 3.3e-09 65.1 70 51.4
Sp4g01020 Schrenkiella parvula HOM05D002058 ORTHO05D003758 3.3e-09 65.1 71 47.9
Eucgr.F02664 Eucalyptus grandis HOM05D002058 ORTHO05D003758 4.3e-09 64.7 64 51.6
Actinidia16044 Actinidia chinensis HOM05D002058 ORTHO05D003758 5.6e-09 64.3 37 83.8
EL10Ac6g13583 Beta vulgaris HOM05D002058 ORTHO05D003758 7.3e-09 63.9 61 57.4
Nitab4.5_0000904g0020 Nicotiana tabacum HOM05D002058 ORTHO05D003758 1.2e-08 63.2 61 55.7
PGSC0003DMG400016553 Solanum tuberosum HOM05D002058 ORTHO05D003758 1.6e-08 62.8 67 52.2
Nitab4.5_0005865g0050 Nicotiana tabacum HOM05D002058 ORTHO05D003758 2.1e-08 62.4 61 55.7
Duzib264G0944 Durio zibethinus HOM05D002058 ORTHO05D003758 3.6e-08 61.6 50 64.0
Haze_17849 Corylus avellana HOM05D002058 ORTHO05D003758 6.1e-08 60.8 77 49.4
PGR042G2519 Punica granatum HOM05D002058 ORTHO05D003758 2.3e-07 58.9 64 45.3
Peaxi162Scf00359g00118 Petunia axillaris HOM05D002058 ORTHO05D003758 5.2e-07 57.8 61 52.5
Potri.002G061100 Populus trichocarpa HOM05D002058 ORTHO05D003758 6.8e-07 57.4 64 50.0
Nn5g28902 Nelumbo nucifera HOM05D002058 ORTHO05D003758 8.9e-07 57.0 72 47.2
Psat7g051520 Pisum sativum HOM05D002058 ORTHO05D003758 8.9e-07 57.0 116 37.1
CSS0046386 Camellia sinensis var. sinensis HOM05D002058 ORTHO05D003758 7.5e-06 53.9 33 81.8


User provided reference genes

Program Settings