Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 0.0e+00 1732.6 880 100.0
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 0.0e+00 1721.1 880 99.2
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 0.0e+00 1505.0 966 81.5
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 0.0e+00 1308.1 910 74.9
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 0.0e+00 1138.3 888 67.6
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 0.0e+00 1133.6 888 67.2
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.2e-286 989.9 890 59.7
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.6e-275 951.8 891 57.9
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 2.1e-251 872.8 888 53.5
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.4e-250 870.2 892 53.3
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 9.0e-250 867.5 889 53.2
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.6e-249 865.9 887 54.0
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.5e-241 840.1 890 52.0
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 2.6e-241 839.3 892 50.8
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 1.3e-240 837.0 896 50.6
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 6.5e-240 834.7 897 50.7
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.4e-239 830.9 891 52.2
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 5.7e-236 821.6 890 49.7
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 5.7e-236 821.6 892 52.1
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 7.4e-236 821.2 903 50.9
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.3e-235 820.5 890 49.7
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 2.8e-235 819.3 890 51.1
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 6.3e-235 818.1 891 51.4
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 9.1e-234 814.3 891 51.3
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 3.4e-233 812.4 891 51.4
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 6.5e-232 808.1 899 49.9
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.1e-231 807.4 877 51.3
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 6.7e-229 798.1 891 49.9
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.5e-228 797.0 891 50.4
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.6e-228 796.2 892 50.7
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 8.2e-227 791.2 899 48.4
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 5.9e-225 785.0 889 49.3
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.7e-225 784.6 915 49.0
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 2.9e-224 782.7 891 50.4
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.2e-222 777.3 908 49.4
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.1e-222 776.5 912 48.1
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 1.2e-220 770.8 890 48.4
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.7e-219 765.8 911 47.0
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 6.3e-219 765.0 890 48.2
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.8e-218 763.5 939 46.9
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 5.0e-216 755.4 893 48.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.5e-215 753.8 912 46.5
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.2e-214 750.7 891 47.5
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.0e-213 746.1 892 48.0
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 4.0e-213 745.7 877 48.5
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 1.2e-212 744.2 873 47.9
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 3.4e-212 742.7 891 47.0
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.6e-209 733.8 877 47.3
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.0e-208 731.1 911 46.9
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 3.8e-208 729.2 898 46.8
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 5.5e-207 725.3 915 46.7
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 2.8e-206 723.0 883 46.0
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.4e-205 720.7 903 46.6
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 6.8e-205 718.4 910 46.8
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.5e-204 717.2 884 46.8
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.6e-204 716.5 885 47.7
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 5.7e-204 715.3 895 46.1
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.7e-203 713.8 892 46.0
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.4e-202 710.7 894 46.1
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.8e-202 710.3 914 46.2
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 4.1e-202 709.1 923 45.5
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 5.4e-202 708.8 900 45.8
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 5.4e-202 708.8 900 45.8
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.3e-200 704.1 877 45.4
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 1.2e-198 697.6 633 58.1
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 2.8e-198 696.4 889 45.1
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 1.0e-197 694.5 914 45.5
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 6.8e-197 691.8 892 44.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 8.9e-197 691.4 876 45.3
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.2e-195 686.8 904 44.8
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 2.9e-195 686.4 870 44.4
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.2e-193 681.0 875 44.2
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 5.9e-193 678.7 869 44.3
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.0e-192 677.9 867 44.4
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.7e-192 677.2 754 50.4
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.7e-192 677.2 876 46.5
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.7e-192 677.2 876 46.5
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.7e-192 677.2 870 44.3
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 2.3e-192 676.8 884 45.0
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 5.6e-191 672.2 864 44.6
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 3.1e-189 666.4 898 44.0
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.4e-188 662.5 877 46.0
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.7e-187 659.4 865 43.8
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 3.7e-187 659.4 947 42.9
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 4.1e-186 656.0 885 43.5
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 4.1e-186 656.0 867 43.7
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 6.0e-185 652.1 866 43.6
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 2.5e-183 646.7 835 45.0
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 5.6e-183 645.6 773 48.6
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 9.5e-183 644.8 890 43.0
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 2.6e-180 636.7 874 42.8
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 2.6e-180 636.7 874 42.8
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 9.9e-180 634.8 950 41.6
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 4.1e-178 629.4 889 43.3
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.4e-178 629.0 765 47.5
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 2.7e-177 626.7 872 43.5
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.7e-177 626.7 634 54.1
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 7.8e-177 625.2 840 44.3
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.3e-176 624.4 751 47.3
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 5.6e-175 619.0 870 43.2
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 5.2e-173 612.5 812 43.8
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 2.1e-169 600.5 878 41.8
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 8.7e-168 595.1 921 40.5
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.2e-163 580.5 688 47.2
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.3e-160 571.2 657 49.6
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 7.3e-159 565.5 890 38.9
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.3e-150 538.1 792 42.8
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 4.0e-149 533.1 705 44.1
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.3e-147 528.1 717 42.3
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 4.0e-141 506.5 650 44.5
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.0e-140 504.2 680 43.5
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 7.1e-138 495.7 663 45.9
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 2.7e-137 493.8 592 48.8
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.7e-131 474.6 585 47.7
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.9e-131 473.8 878 36.6
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 7.2e-114 416.0 522 47.5
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 1.6e-113 414.8 676 37.7
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.2e-102 377.9 360 53.9
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.0e-99 366.7 560 41.4
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.5e-95 355.1 591 38.7
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 3.6e-89 334.0 518 41.7
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.8e-88 331.6 569 36.9
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 5.4e-85 320.1 338 52.4
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 5.6e-82 310.1 990 27.9
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 1.5e-74 285.4 711 30.5
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 5.6e-74 283.5 306 52.6
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 6.2e-73 280.0 478 40.0
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.6e-68 263.8 540 33.3
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 4.6e-68 263.8 613 31.6
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 7.3e-66 256.5 228 62.3
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 4.9e-62 243.8 197 66.5
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 4.6e-60 237.3 308 44.8
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 7.1e-53 213.4 344 41.9
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 6.0e-52 210.3 175 64.0
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 1.3e-51 209.1 177 58.8
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 8.7e-51 206.5 188 56.4
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.5e-50 205.7 181 58.0
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 2.6e-47 194.9 179 57.5
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.4e-45 188.3 228 49.1
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 3.9e-43 181.0 121 71.1
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 3.9e-43 181.0 268 42.5
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.9e-42 178.7 198 50.5
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 3.1e-40 171.4 116 65.5
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 4.9e-38 164.1 481 29.1
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 4.2e-37 161.0 166 53.0
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 7.1e-37 160.2 165 50.3
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.7e-36 158.3 148 58.1
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 6.7e-35 153.7 117 61.5
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 4.3e-34 151.0 117 59.8
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 9.6e-34 149.8 294 34.0
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 1.5e-31 142.5 118 55.9
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.6e-31 141.7 99 69.7
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.5e-31 141.0 96 70.8
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 1.1e-29 136.3 155 51.0
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.9e-29 135.6 154 47.4
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.2e-29 134.4 93 69.9
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 9.3e-29 133.3 155 50.3
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.2e-28 132.9 151 47.7
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.0e-27 129.8 202 38.1
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 9.0e-24 116.7 99 58.6
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 3.4e-23 114.8 532 26.7
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.0e-22 113.2 268 31.0
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 5.5e-21 107.5 247 29.1
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 1.6e-20 105.9 80 62.5
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 8.2e-17 93.6 152 41.4
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 2.4e-16 92.0 130 38.5
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.6e-15 88.6 80 61.2
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 4.5e-15 87.8 81 53.1
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-13 83.2 62 74.2
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 1.2e-12 79.7 88 53.4
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.7e-12 78.6 214 33.2
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 4.6e-12 77.8 72 55.6
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 1.0e-11 76.6 119 42.0
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.3e-11 75.5 56 66.1
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 5.1e-11 74.3 162 32.1
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.1e-11 74.3 64 65.6
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.5e-10 72.0 49 65.3
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 2.2e-09 68.9 246 27.2
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.8e-09 67.8 65 60.0
MBI15_g10869_MAGBIO Magnolia biondii HOM05D021441 ORTHO05D004344 5.0e-06 57.8 36 63.9


User provided reference genes

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