Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 0.0e+00 1332.4 653 100.0
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 2.2e-245 852.4 658 67.8
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.5e-238 829.7 659 66.0
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.9e-228 796.2 585 69.7
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 3.2e-228 795.4 607 69.4
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 6.3e-224 781.2 655 62.1
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 1.4e-223 780.0 638 63.3
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 2.3e-218 762.7 585 65.6
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.3e-218 762.7 641 61.8
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 7.5e-217 757.7 599 64.3
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 4.8e-216 755.0 585 65.6
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 2.4e-215 752.7 575 65.0
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 4.1e-215 751.9 662 60.1
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.2e-214 750.4 614 62.5
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 4.5e-214 748.4 599 63.1
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 2.9e-213 745.7 571 65.5
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.5e-212 743.4 687 58.8
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.9e-212 743.0 666 59.5
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.9e-212 743.0 625 60.6
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 1.2e-211 740.3 660 58.6
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.2e-211 740.3 655 58.8
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 8.0e-211 737.6 658 59.7
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 1.0e-210 737.3 655 60.0
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 1.0e-210 737.3 644 59.6
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 1.8e-210 736.5 606 62.5
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.8e-210 736.5 648 59.3
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 2.3e-210 736.1 574 63.8
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 4.0e-210 735.3 653 57.7
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 4.0e-210 735.3 644 59.6
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 6.8e-210 734.6 604 61.6
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 3.4e-209 732.3 648 59.3
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 3.4e-209 732.3 654 58.3
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 3.4e-209 732.3 633 58.9
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 3.4e-209 732.3 660 57.4
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 8.3e-208 727.6 655 58.5
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 8.3e-208 727.6 574 63.4
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 1.4e-207 726.9 731 54.7
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 1.8e-207 726.5 588 61.6
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.8e-207 726.5 577 63.1
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.1e-207 725.7 659 59.2
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 3.1e-207 725.7 594 60.8
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 5.4e-207 724.9 628 59.9
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.6e-206 723.4 585 62.2
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 2.0e-206 723.0 656 58.2
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 2.0e-206 723.0 593 60.7
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 2.7e-206 722.6 622 59.6
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 5.9e-206 721.5 607 61.0
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 6.6e-205 718.0 574 61.8
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.1e-204 717.2 572 62.2
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 1.9e-204 716.5 659 58.3
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 1.9e-204 716.5 655 58.2
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.5e-204 716.1 659 58.3
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 2.5e-204 716.1 637 59.5
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 3.3e-204 715.7 644 59.3
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.3e-204 715.7 659 58.3
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 3.3e-204 715.7 660 57.3
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 9.5e-204 714.1 654 58.0
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 1.2e-203 713.8 660 57.3
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 2.8e-203 712.6 571 61.8
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 4.7e-203 711.8 578 62.5
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 6.1e-203 711.4 615 59.0
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 8.0e-203 711.1 585 62.4
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 1.4e-202 710.3 579 61.5
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 2.3e-202 709.5 569 62.9
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.5e-201 706.8 579 61.3
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 2.0e-201 706.4 657 56.2
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 9.8e-201 704.1 576 61.6
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 1.7e-200 703.4 652 57.5
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.4e-199 700.3 578 61.2
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 2.4e-199 699.5 616 58.6
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 3.2e-199 699.1 578 60.6
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 4.1e-199 698.7 570 62.3
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 2.0e-198 696.4 574 60.8
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 3.5e-198 695.7 731 52.1
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 4.6e-198 695.3 618 57.6
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 6.0e-198 694.9 590 59.3
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 6.0e-198 694.9 675 56.1
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 2.3e-197 693.0 633 57.0
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 1.5e-196 690.3 587 59.6
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 5.6e-196 688.3 585 58.8
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 9.5e-196 687.6 656 55.3
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 9.5e-196 687.6 604 59.3
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 1.2e-195 687.2 602 59.0
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 4.7e-195 685.3 613 57.3
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 3.1e-194 682.6 620 57.3
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 3.1e-194 682.6 653 54.5
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 1.2e-193 680.6 585 59.1
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 2.9e-192 676.0 602 58.0
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 2.9e-192 676.0 656 55.3
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.7e-192 675.6 567 61.6
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 4.9e-192 675.2 602 58.0
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 8.3e-192 674.5 602 58.0
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.9e-191 673.3 633 57.3
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 1.6e-190 670.2 596 57.2
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 6.0e-190 668.3 651 56.2
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 5.6e-188 661.8 545 61.1
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 1.1e-186 657.5 577 61.5
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 1.3e-184 650.6 665 53.4
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 3.7e-184 649.0 530 60.8
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.4e-183 646.4 607 55.4
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 7.8e-182 641.3 585 56.9
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.7e-181 640.2 607 55.0
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 3.9e-181 639.0 530 60.2
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 4.3e-180 635.6 567 56.6
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 4.2e-175 619.0 548 57.8
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 7.1e-175 618.2 573 53.9
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 1.2e-171 607.4 567 53.3
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.3e-170 602.1 465 66.9
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 5.3e-170 602.1 530 58.7
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 9.0e-170 601.3 573 53.9
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.1e-167 594.3 573 53.4
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 1.6e-166 590.5 571 54.5
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 2.8e-163 579.7 560 54.5
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.2e-161 574.3 587 52.0
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 5.8e-161 572.0 602 48.5
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 6.4e-160 568.5 580 54.1
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 2.1e-158 563.5 568 52.3
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.4e-153 546.2 568 51.1
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 5.5e-151 538.9 561 49.9
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 2.5e-148 530.0 591 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 4.5e-137 492.7 599 45.9
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.7e-128 464.2 500 52.4
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 5.3e-122 442.6 457 52.5
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 9.4e-111 405.2 527 43.3
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 6.1e-110 402.5 610 40.5
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 2.2e-104 384.0 468 48.1
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.9e-103 380.9 418 51.2
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 4.1e-98 363.2 357 52.7
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.0e-97 360.9 363 54.0
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-90 337.0 260 61.5
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 4.6e-89 333.2 435 46.2
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 2.0e-84 317.8 213 68.1
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 7.8e-73 279.3 372 43.8
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 1.6e-65 255.0 169 76.3
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 3.0e-64 250.8 346 40.5
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 3.6e-54 217.2 151 69.5
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.6e-44 184.5 120 72.5
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 5.5e-42 176.8 264 38.6
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 6.7e-40 169.9 101 83.2
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 7.4e-39 166.4 177 54.2
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.1e-37 162.5 91 80.2
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.4e-37 162.2 152 57.9
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 4.2e-34 150.6 119 63.0
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 3.0e-32 144.4 284 36.6
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 4.5e-20 104.0 120 52.5
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 3.3e-15 87.8 57 64.9
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 2.0e-12 78.6 65 70.8
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 1.3e-11 75.9 62 66.1
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 2.9e-11 74.7 49 77.6
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 2.9e-11 74.7 49 77.6
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 1.9e-10 72.0 56 57.1
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 1.6e-09 68.9 104 44.2
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 1.7e-06 58.9 48 62.5


User provided reference genes

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