Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 0.0e+00 1464.1 722 100.0
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 0.0e+00 1142.1 682 84.9
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 2.3e-275 952.2 709 69.3
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 6.5e-254 880.9 640 71.2
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 6.1e-252 874.4 690 65.9
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.7e-241 839.7 634 68.3
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 1.1e-234 817.0 710 61.5
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 2.2e-225 786.2 745 57.4
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.8e-224 783.1 699 59.4
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 9.1e-224 780.8 704 60.9
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 3.5e-223 778.9 657 61.5
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 2.5e-221 772.7 723 59.1
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 3.2e-221 772.3 649 61.6
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 4.7e-220 768.5 672 59.8
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 4.7e-220 768.5 674 59.3
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 4.0e-219 765.4 708 58.2
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.5e-218 763.5 728 56.3
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.0e-218 763.1 682 58.8
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 2.6e-218 762.7 708 57.9
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 7.0e-216 754.6 685 58.5
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 9.1e-216 754.2 717 58.0
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.2e-215 753.8 733 57.4
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 2.0e-215 753.1 742 55.5
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 5.0e-214 748.4 625 63.4
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 6.6e-214 748.0 671 59.9
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.9e-213 746.5 674 58.9
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 3.3e-213 745.7 699 59.8
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 4.2e-213 745.3 718 55.8
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 5.5e-213 745.0 688 58.7
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 6.1e-212 741.5 702 58.5
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 1.7e-209 733.4 692 57.8
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 3.7e-209 732.3 693 57.6
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 2.0e-207 726.5 713 56.7
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 3.5e-207 725.7 702 56.3
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.3e-206 723.8 690 58.1
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 2.3e-206 723.0 671 58.1
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 2.9e-206 722.6 702 56.0
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 3.8e-206 722.2 690 56.8
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 6.6e-206 721.5 688 58.1
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 8.6e-206 721.1 681 57.7
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.9e-205 719.9 703 56.9
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.5e-205 719.5 691 56.3
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 5.6e-205 718.4 714 55.6
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 2.1e-204 716.5 690 55.8
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 2.8e-204 716.1 691 56.0
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 2.8e-204 716.1 713 56.0
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 3.6e-204 715.7 738 54.7
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 3.6e-204 715.7 711 55.1
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 6.1e-204 714.9 690 56.8
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.8e-203 713.4 700 57.1
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 5.8e-202 708.4 690 55.8
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 1.1e-200 704.1 692 56.4
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.4e-200 703.7 665 56.4
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 2.4e-200 703.0 638 58.9
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 3.2e-200 702.6 665 56.8
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 3.2e-200 702.6 666 56.6
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 7.0e-200 701.4 683 56.7
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 9.2e-200 701.0 684 57.2
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 3.0e-198 696.0 663 56.7
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 5.0e-198 695.3 748 52.0
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 4.3e-197 692.2 627 58.1
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 3.6e-196 689.1 741 52.6
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 2.3e-195 686.4 662 55.4
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 5.2e-195 685.3 664 56.5
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.5e-194 683.7 609 59.4
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.9e-190 669.1 482 68.9
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.2e-188 664.1 737 52.8
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 7.5e-186 654.8 689 53.1
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 7.5e-186 654.8 689 53.1
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 1.3e-185 654.1 729 51.3
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.1e-184 651.0 687 52.7
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 1.2e-183 647.5 567 58.6
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 9.5e-181 637.9 700 50.9
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.8e-179 633.6 656 53.2
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 1.2e-178 630.9 648 52.3
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 2.2e-177 626.7 691 51.5
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 2.9e-177 626.3 687 51.5
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 6.4e-177 625.2 653 52.2
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 2.4e-176 623.2 690 51.6
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 4.6e-175 619.0 654 52.1
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 7.8e-175 618.2 687 50.5
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 2.5e-173 613.2 692 51.4
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.6e-170 603.2 462 64.5
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 5.8e-170 602.1 683 50.4
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 3.8e-169 599.4 688 49.6
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 1.7e-166 590.5 676 48.8
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.7e-166 590.5 660 52.3
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 3.9e-166 589.3 685 49.1
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 1.1e-165 587.8 680 48.8
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.9e-165 587.0 672 48.7
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.3e-158 564.3 663 49.6
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 4.8e-156 555.8 653 47.8
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 4.6e-143 512.7 445 60.9
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 9.7e-141 505.0 469 56.5
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 2.6e-138 496.9 517 54.7
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.5e-133 481.1 499 56.3
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 2.0e-133 480.7 763 41.2
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.2e-129 467.2 444 55.2
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 2.2e-124 450.7 651 44.5
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 9.4e-120 435.3 663 38.9
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 4.4e-117 426.4 672 41.2
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 2.2e-116 424.1 625 44.2
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 1.4e-107 394.8 766 37.2
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 1.5e-101 374.8 426 47.7
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 1.3e-81 308.5 794 30.6
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.2e-79 302.0 413 45.0
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 4.9e-68 263.5 699 31.5
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 9.9e-61 239.2 462 37.0
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 9.9e-61 239.2 350 44.6
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 5.6e-56 223.4 249 53.0
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 5.6e-48 196.8 208 53.4
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.4e-46 192.2 247 45.3
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 9.6e-40 169.5 567 27.9
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.1e-32 146.0 109 64.2
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 5.7e-32 143.7 307 34.5
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.1e-31 141.7 112 65.2
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.8e-31 141.4 621 24.2
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.9e-28 131.3 190 42.1
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 8.2e-23 113.2 79 73.4
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 5.3e-22 110.5 94 61.7
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 6.9e-22 110.2 165 45.5
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 9.0e-22 109.8 171 39.8
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 2.5e-19 101.7 99 56.6
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 3.2e-19 101.3 100 57.0
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 5.7e-16 90.5 113 49.6
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.8e-15 88.2 153 40.5
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 8.5e-12 76.6 99 48.5
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.9e-11 75.5 168 28.6
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 2.2e-07 62.0 60 40.0
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 2.2e-07 62.0 60 40.0
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 2.2e-07 62.0 60 40.0
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 4.8e-07 60.8 60 38.3
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.8e-07 60.8 60 40.0
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 4.8e-07 60.8 66 37.9
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 6.3e-07 60.5 60 40.0
A09p02800 Brassica napus HOM05D000463 ORTHO05D001294 1.4e-06 59.3 60 38.3
BraA09t35921Z Brassica rapa HOM05D000463 ORTHO05D001294 1.4e-06 59.3 60 38.3
Eucgr.F01104 Eucalyptus grandis HOM05D000463 ORTHO05D001294 1.4e-06 59.3 61 37.7
FvH4_6g22060 Fragaria vesca HOM05D000463 ORTHO05D004638 1.4e-06 59.3 121 30.6
FAN14G0395 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.8e-06 58.9 121 30.6
MELO3C016706.2 Cucumis melo HOM05D000463 ORTHO05D001294 2.4e-06 58.5 60 35.0
CsaV3_4G033770 Cucumis sativus L. HOM05D000463 ORTHO05D001294 2.4e-06 58.5 60 35.0
Nitab4.5_0001551g0050 Nicotiana tabacum HOM05D000463 ORTHO05D001294 2.4e-06 58.5 118 28.0
Oeu005852.1 Olea europaea HOM05D000463 ORTHO05D001294 2.4e-06 58.5 82 34.1
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 2.4e-06 58.5 67 35.8
Migut.H01182 Erythranthe guttata HOM05D000463 ORTHO05D001294 4.1e-06 57.8 88 34.1
Peaxi162Scf00000g04012 Petunia axillaris HOM05D000463 ORTHO05D001294 4.1e-06 57.8 76 34.2
Sed0026724 Sechium edule HOM05D000463 ORTHO05D001294 4.1e-06 57.8 60 33.3
vmacro07897 Vaccinium macrocarpon HOM05D000463 ORTHO05D004638 4.1e-06 57.8 67 35.8
BcaB01g01944 Brassica carinata HOM05D000463 ORTHO05D001294 5.3e-06 57.4 60 38.3
Nitab4.5_0013630g0020 Nicotiana tabacum HOM05D000463 ORTHO05D001294 5.3e-06 57.4 60 36.7
Oeu034166.3 Olea europaea HOM05D000463 ORTHO05D001294 5.3e-06 57.4 63 39.7
Lsat_1_v5_gn_7_21121 Lactuca sativa HOM05D000463 ORTHO05D001294 7.0e-06 57.0 94 30.9
Nitab4.5_0002383g0090 Nicotiana tabacum HOM05D000463 ORTHO05D001294 7.0e-06 57.0 60 36.7
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 9.1e-06 56.6 61 34.4
Dinv08303 Davidia involucrata HOM05D000463 ORTHO05D001294 9.1e-06 56.6 61 34.4
Dinv20167 Davidia involucrata HOM05D000463 ORTHO05D001294 9.1e-06 56.6 61 34.4
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 9.1e-06 56.6 60 38.3
Solyc07g063200.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 9.1e-06 56.6 60 38.3
Sopen07g031390 Solanum pennellii HOM05D000463 ORTHO05D001294 9.1e-06 56.6 60 38.3
PGSC0003DMG400012421 Solanum tuberosum HOM05D000114 ORTHO05D000075 9.1e-06 56.6 60 38.3
unitig_744.g24406 Utricularia gibba HOM05D000463 ORTHO05D004638 9.1e-06 56.6 60 41.7


User provided reference genes

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