Gene: PGSC0003DMG400012421
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400012421
- Transcript Identifier PGSC0003DMT400032334
- Gene Type Coding gene
- Location ST4.03ch07 : 53266888-53273035 : positive
Gene Family Information
- ID HOM05D000114
- #Genes/#Species 2914/98
- Phylogenetic origin
- ID ORTHO05D000075
- #Genes/#Species 2458/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 37431207
- id PGSC0003DMG400012421.v4.03
- uniprot M1AX90
Descriptions
- Description Alpha-expansin 12
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009664 | IEA | InterPro | plant-type cell wall organization | |
| GO:0016567 | IEA | GOA Database | protein ubiquitination | |
| GO:0006511 | IEA | GOA Database | ubiquitin-dependent protein catabolic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0061630 | IEA | GOA Database | ubiquitin protein ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005576 | IEA | InterPro | extracellular region | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005783 | IEA | GOA Database | endoplasmic reticulum |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007118 | Expansin/Lol pI |
| IPR018957 | Zinc finger, C3HC4 RING-type |
| IPR036749 | Expansin, cellulose-binding-like domain superfamily |
| IPR036908 | RlpA-like domain superfamily |
| IPR007117 | Expansin, cellulose-binding-like domain |
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR007112 | Expansin/pollen allergen, DPBB domain |
| IPR009009 | RlpA-like protein, double-psi beta-barrel domain |
| IPR002963 | Expansin |
| Mapman id | Description |
|---|---|
| 19.2.2.1.4.3.2 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-HC-class E3 ligase |
| 21.4.2.1 | Cell wall organisation.cell wall proteins.expansin activities.alpha-class expansin |