Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 0.0e+00 3757.2 1858 100.0
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 3157.5 1950 82.3
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 0.0e+00 3107.4 1848 84.3
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 2812.7 1849 75.8
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 0.0e+00 2684.1 1850 73.2
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 0.0e+00 2496.5 1848 68.3
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 0.0e+00 2360.5 1855 63.9
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 0.0e+00 2231.8 1859 61.8
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 0.0e+00 2220.7 1871 61.2
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 0.0e+00 2176.7 1864 60.7
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 2169.0 1844 59.4
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 0.0e+00 2167.9 1884 60.2
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 0.0e+00 2122.4 1855 58.8
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 0.0e+00 2117.8 1874 58.0
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 0.0e+00 2117.8 1861 58.4
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 0.0e+00 2113.6 1848 58.4
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 2105.9 1869 59.2
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 0.0e+00 2103.2 1915 57.0
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 0.0e+00 2097.4 1850 57.9
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 0.0e+00 2088.9 1851 58.0
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 0.0e+00 2087.0 1886 58.1
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 0.0e+00 2078.5 1849 57.9
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 0.0e+00 2075.1 1869 57.3
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 0.0e+00 2072.7 1852 58.2
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 0.0e+00 2063.5 1852 57.5
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 0.0e+00 2051.2 1850 57.2
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 0.0e+00 2049.6 1876 57.1
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 0.0e+00 2046.9 1851 57.4
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 0.0e+00 2044.6 1880 57.3
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 0.0e+00 2042.3 1880 57.3
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 2036.5 1849 57.7
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 0.0e+00 2035.8 1860 57.3
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 0.0e+00 2020.4 1849 57.5
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 0.0e+00 2008.8 1878 56.1
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 0.0e+00 2004.9 1875 56.5
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 0.0e+00 1995.3 1850 56.5
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 0.0e+00 1993.0 1849 56.7
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 0.0e+00 1985.3 1849 55.8
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 0.0e+00 1977.2 1864 55.7
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 0.0e+00 1948.7 1861 55.0
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 0.0e+00 1943.3 1875 54.0
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 0.0e+00 1941.0 1877 55.2
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 0.0e+00 1920.6 1803 56.0
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 0.0e+00 1914.8 1865 54.8
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 0.0e+00 1905.2 1855 53.0
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 0.0e+00 1901.3 1861 54.0
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 0.0e+00 1897.1 1871 54.5
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 0.0e+00 1892.5 1896 53.9
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 0.0e+00 1885.9 1853 54.3
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 0.0e+00 1883.6 1894 53.8
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 0.0e+00 1882.5 1870 53.4
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 0.0e+00 1880.9 1866 53.4
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1876.3 1869 52.7
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 1876.3 1868 53.0
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 0.0e+00 1874.0 1876 54.6
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 0.0e+00 1873.2 1861 53.2
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1872.8 1854 53.3
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 0.0e+00 1872.4 1873 52.7
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 0.0e+00 1872.4 1854 53.6
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 0.0e+00 1869.4 1874 53.7
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 0.0e+00 1869.0 1856 53.3
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 0.0e+00 1866.3 1908 52.5
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 0.0e+00 1863.2 1840 53.8
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 1860.1 1882 52.9
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 0.0e+00 1859.3 1874 53.0
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 0.0e+00 1851.6 1902 53.1
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1851.6 1849 53.1
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1838.5 1877 52.2
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 0.0e+00 1838.5 1882 52.1
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1836.6 1891 51.6
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 0.0e+00 1817.4 1852 52.5
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 0.0e+00 1814.3 1845 51.4
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 0.0e+00 1812.3 1857 51.8
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 0.0e+00 1807.7 1898 51.7
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 0.0e+00 1803.1 1853 51.2
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 0.0e+00 1800.4 1842 51.5
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 0.0e+00 1799.3 1848 51.3
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 0.0e+00 1795.8 1844 51.0
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 0.0e+00 1788.1 1855 51.1
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 0.0e+00 1786.2 1855 51.2
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 0.0e+00 1786.2 1846 51.4
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 0.0e+00 1778.8 1862 51.0
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 0.0e+00 1775.8 1862 50.6
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 0.0e+00 1748.4 2050 48.9
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 0.0e+00 1713.0 1854 48.9
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 0.0e+00 1691.0 1669 53.4
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 0.0e+00 1675.6 1611 54.3
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 0.0e+00 1635.5 1959 47.1
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 0.0e+00 1602.8 1870 47.0
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 0.0e+00 1587.4 1860 48.5
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 0.0e+00 1478.4 1964 45.3
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 0.0e+00 1376.3 1390 53.0
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 0.0e+00 1364.7 1169 57.7
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 0.0e+00 1326.6 1183 59.1
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 0.0e+00 1326.2 1350 53.2
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 0.0e+00 1283.1 1563 46.3
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 0.0e+00 1252.7 1692 44.6
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 0.0e+00 1252.3 1190 56.4
TAR636G1846 Trochodendron aralioides HOM05D002270 ORTHO05D002866 0.0e+00 1177.5 817 70.0
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 0.0e+00 1120.9 1994 36.5
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 0.0e+00 1092.8 1951 36.8
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 9.9e-307 1057.7 1965 35.2
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 1.5e-294 1017.3 1651 39.7
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 1.8e-287 993.8 1254 44.3
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 6.3e-269 932.2 1816 34.3
TAR636G1145 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.2e-216 758.4 720 53.6
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 3.1e-199 700.7 618 57.9
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 2.6e-190 671.0 517 66.0
SEGI_24765 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 4.8e-184 650.2 567 57.8
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.8e-175 621.7 1174 35.3
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 7.9e-171 606.3 1201 34.9
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.4e-146 525.8 431 62.6
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 3.5e-134 484.6 656 42.4
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 4.0e-130 471.1 523 48.0
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 1.8e-122 445.7 481 49.3
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 2.7e-118 431.8 606 40.8
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 2.0e-105 389.0 1454 26.3
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 4.3e-84 318.2 244 65.2
C02p22530 Brassica napus HOM05D002270 ORTHO05D002866 6.9e-74 284.3 282 52.5
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 3.4e-73 282.0 244 60.7
SHI16813 Sapria himalayana HOM05D002270 ORTHO05D002866 1.9e-71 276.2 238 59.7
SEGI_12162 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 4.2e-71 275.0 276 47.1
SHI16815 Sapria himalayana HOM05D002270 ORTHO05D002866 2.1e-70 272.7 204 65.2
C05p38600 Brassica napus HOM05D002270 ORTHO05D016129 2.3e-69 269.2 587 31.9
SEGI_14766 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.9e-69 268.5 631 30.6
SEGI_27232 Sequoiadendron giganteum HOM05D002270 ORTHO05D000001 9.6e-68 263.8 235 54.9
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 5.0e-64 251.5 411 37.5
ATR0736G169 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.1e-63 250.4 951 25.4
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 2.5e-60 239.2 932 25.0
BolC2t08407H Brassica oleracea HOM05D002270 ORTHO05D002866 5.3e-58 231.5 201 57.2
Cpa.g.sc30.11 Carica papaya HOM05D002270 ORTHO05D002866 5.5e-55 221.5 193 58.0
Cre02.g095550 Chlamydomonas reinhardtii HOM05D053512 ORTHO05D012763 1.0e-53 217.2 1098 24.8
Cre02.g095250 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 5.7e-52 211.5 1095 24.7
VMungo1383G2297 Vigna mungo HOM05D002270 ORTHO05D002866 2.6e-49 202.6 170 60.0
Cpa.g.sc30.12 Carica papaya HOM05D002270 ORTHO05D002866 1.7e-48 199.9 549 28.4
Lalb_Chr20g0113901 Lupinus albus HOM05D002270 ORTHO05D002866 6.5e-48 198.0 174 59.8
QL93p0356_0058 Quercus lobata HOM05D002270 ORTHO05D002866 8.5e-48 197.6 232 46.6
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 4.2e-47 195.3 524 28.6
arahy.Tifrunner.gnm1.ann1.I4EX6M Arachis hypogaea HOM05D002270 ORTHO05D002866 1.2e-46 193.7 525 28.8
QL01p054541 Quercus lobata HOM05D002270 ORTHO05D002866 9.7e-44 184.1 214 46.7
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 2.2e-43 183.0 608 27.3
BolC5t32598H Brassica oleracea HOM05D002270 ORTHO05D016129 5.9e-41 174.9 247 40.1
TPR.G27589 Trifolium pratense HOM05D002270 ORTHO05D016129 2.2e-40 172.9 200 46.0
TAR371G0164 Trochodendron aralioides HOM05D002270 ORTHO05D002866 6.3e-35 154.8 101 75.2
C02p22540 Brassica napus HOM05D002270 ORTHO05D002866 1.8e-34 153.3 150 48.7
BolC2t08408H Brassica oleracea HOM05D002270 ORTHO05D002866 3.1e-34 152.5 152 47.4
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.2e-33 150.6 600 26.2
TAR371G0515 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.5e-31 142.9 116 59.5
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 9.4e-31 141.0 469 27.1
BolC5t32599H Brassica oleracea HOM05D002270 ORTHO05D002866 1.8e-29 136.7 279 32.3
Lsat_1_v5_gn_9_82220 Lactuca sativa HOM05D002270 ORTHO05D002866 2.8e-27 129.4 165 46.7
Cpa.g.sc30.8 Carica papaya HOM05D002270 ORTHO05D002866 1.2e-25 124.0 122 54.1
COL.COLO4_09445 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.3e-21 109.8 70 74.3
VMungo0366G0001 Vigna mungo HOM05D002270 ORTHO05D002866 1.2e-20 107.5 178 38.8
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.6e-20 106.3 94 57.4
Glyma.19G039050 Glycine max HOM05D002270 ORTHO05D016129 5.7e-20 105.1 132 45.5
GSVIVG01012486001 Vitis vinifera HOM05D002270 ORTHO05D002866 3.5e-17 95.9 51 86.3
MBI15_g37229_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 1.0e-16 94.4 68 66.2
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 9.5e-15 87.8 236 29.2
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 1.6e-14 87.0 424 25.2
Psat3g019920 Pisum sativum HOM05D002270 ORTHO05D002866 1.8e-13 83.6 92 43.5
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 8.9e-13 81.3 233 30.5
SHI16814 Sapria himalayana HOM05D002270 ORTHO05D050813 2.2e-11 76.6 118 36.4
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 2.4e-10 73.2 335 24.2
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 7.0e-10 71.6 124 33.9
arahy.Tifrunner.gnm1.ann1.X0CJR3 Arachis hypogaea HOM05D000682 ORTHO05D000510 9.2e-10 71.2 55 70.9
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 3.5e-09 69.3 88 50.0
SalBow4G2096 Salvia bowleyana HOM05D002270 ORTHO05D004964 7.8e-09 68.2 151 33.8
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 3.0e-08 66.2 119 34.5
Psat4g103760 Pisum sativum HOM05D001026 ORTHO05D020973 3.0e-08 66.2 60 48.3
Psat0s3488g0040 Pisum sativum HOM05D002270 ORTHO05D030496 5.0e-08 65.5 88 48.9
Lsat_1_v5_gn_7_50160 Lactuca sativa HOM05D002270 ORTHO05D003355 1.5e-07 63.9 58 56.9
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 1.5e-07 63.9 107 35.5
Lsat_1_v5_gn_1_113200 Lactuca sativa HOM05D002270 ORTHO05D015243 9.5e-07 61.2 35 82.9
Hund30627 Selenicereus undatus HOM05D002270 ORTHO05D050813 9.5e-07 61.2 101 39.6
MBI18_g43595_MAGBIO Magnolia biondii HOM05D002270 ORTHO05D016129 1.6e-06 60.5 91 35.2
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.1e-06 60.1 87 34.5
FvH4_6g28250 Fragaria vesca HOM05D002270 ORTHO05D045643 2.1e-06 60.1 47 61.7
FAN14G0930 Fragaria x ananassa HOM05D002270 ORTHO05D045643 3.6e-06 59.3 44 65.9
Sp5g22060 Schrenkiella parvula HOM05D002270 ORTHO05D002866 6.2e-06 58.5 150 30.0
Lsat_1_v5_gn_2_73541 Lactuca sativa HOM05D002270 ORTHO05D002866 8.0e-06 58.2 58 55.2


User provided reference genes

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