Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21921 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 1.5e-142 509.6 269 100.0
Rhsim10G0212500 Rhododendron simsii HOM05D002880 ORTHO05D003450 4.1e-129 464.9 258 95.3
Actinidia22981 Actinidia chinensis HOM05D002880 ORTHO05D003450 4.6e-120 434.9 267 82.8
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 8.1e-117 424.1 259 83.4
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 1.8e-116 422.9 258 83.3
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 1.2e-115 420.2 268 80.2
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 1.2e-115 420.2 268 80.2
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 5.1e-111 404.8 259 79.9
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 5.1e-111 404.8 259 80.7
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 1.1e-110 403.7 258 78.7
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 1.1e-110 403.7 258 81.8
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 4.3e-110 401.7 259 79.2
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 9.6e-110 400.6 259 78.8
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 1.1e-108 397.1 258 79.1
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 1.1e-108 397.1 258 79.1
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 2.4e-108 396.0 259 79.9
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 6.9e-108 394.4 259 77.6
CAN.G1671.12 Capsicum annuum HOM05D002880 ORTHO05D003450 3.4e-107 392.1 252 79.4
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 3.4e-107 392.1 259 77.2
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 4.4e-107 391.7 258 77.5
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 2.4e-105 386.0 260 77.3
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 2.4e-105 386.0 268 76.1
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 7.1e-105 384.4 268 75.7
Gohir.D11G183201 Gossypium hirsutum HOM05D002880 ORTHO05D003450 7.1e-105 384.4 261 77.0
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 7.1e-105 384.4 261 77.0
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 7.1e-105 384.4 260 77.3
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 1.6e-104 383.3 259 75.3
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 2.1e-104 382.9 261 76.6
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 6.0e-104 381.3 261 76.6
Gohir.A11G175612 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.3e-103 380.2 261 76.2
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 1.7e-103 379.8 260 75.8
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 1.7e-103 379.8 264 75.8
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 2.3e-103 379.4 267 75.3
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 2.3e-103 379.4 267 75.3
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 2.3e-103 379.4 261 76.6
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 6.6e-103 377.9 262 77.1
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 1.9e-102 376.3 258 75.6
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 3.3e-102 375.6 260 76.2
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 3.3e-102 375.6 259 76.8
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 3.3e-102 375.6 261 75.9
QL06p032715 Quercus lobata HOM05D002880 ORTHO05D003450 5.6e-102 374.8 264 75.4
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 1.3e-101 373.6 254 78.0
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 1.3e-101 373.6 260 76.2
Ah.03g148750 Amaranthus hybridus HOM05D002880 ORTHO05D003450 2.8e-101 372.5 262 76.0
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 2.8e-101 372.5 259 76.1
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 2.8e-101 372.5 261 75.5
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 2.8e-101 372.5 260 75.4
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 6.2e-101 371.3 260 75.4
Lalb_Chr09g0321751 Lupinus albus HOM05D002880 ORTHO05D003450 6.2e-101 371.3 260 75.8
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 8.1e-101 370.9 261 75.1
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 8.1e-101 370.9 261 74.7
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 8.1e-101 370.9 278 71.2
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 8.1e-101 370.9 261 75.1
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 1.1e-100 370.5 261 75.5
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 1.1e-100 370.5 260 75.8
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 1.1e-100 370.5 261 74.3
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 1.4e-100 370.2 263 75.3
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 1.4e-100 370.2 258 74.4
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 3.1e-100 369.0 270 72.2
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 6.9e-100 367.9 260 73.5
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 9.0e-100 367.5 260 73.8
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 9.0e-100 367.5 257 76.3
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 1.2e-99 367.1 261 73.6
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 1.2e-99 367.1 261 73.6
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 1.2e-99 367.1 256 75.0
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 5.8e-99 364.8 270 72.6
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 5.8e-99 364.8 260 73.1
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 9.9e-99 364.0 257 75.5
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 2.9e-98 362.5 261 72.8
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 2.9e-98 362.5 270 71.9
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 3.8e-98 362.1 270 71.5
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 3.8e-98 362.1 260 73.1
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 1.1e-97 360.5 258 73.6
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 1.1e-97 360.5 258 73.6
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 1.4e-97 360.1 259 74.5
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 1.4e-97 360.1 258 72.9
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 1.9e-97 359.8 261 72.4
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 1.9e-97 359.8 261 72.8
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 1.9e-97 359.8 261 72.8
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 2.4e-97 359.4 259 73.0
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 2.4e-97 359.4 258 72.5
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 2.4e-97 359.4 258 73.3
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 4.2e-97 358.6 258 72.5
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 5.4e-97 358.2 259 73.4
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 7.1e-97 357.8 258 72.9
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 1.2e-96 357.1 261 71.6
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 1.6e-96 356.7 259 72.6
MBI14_g08218_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 2.1e-96 356.3 278 70.1
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 2.1e-96 356.3 269 70.6
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 2.7e-96 355.9 261 72.8
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 7.9e-96 354.4 258 71.3
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 1.8e-95 353.2 255 73.3
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 1.8e-95 353.2 252 73.4
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 3.9e-95 352.1 258 70.5
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 3.9e-95 352.1 261 71.6
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 5.1e-95 351.7 269 71.4
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 8.7e-95 350.9 258 72.1
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 8.7e-95 350.9 261 71.6
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 1.5e-94 350.1 261 71.6
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 1.5e-94 350.1 261 71.6
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 3.3e-94 349.0 261 71.3
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 9.6e-94 347.4 261 71.3
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 1.3e-93 347.1 258 71.3
Gohir.A02G170550 Gossypium hirsutum HOM05D002880 ORTHO05D003450 9.0e-92 340.9 245 72.7
SHI08554 Sapria himalayana HOM05D002880 ORTHO05D003450 2.0e-91 339.7 260 68.8
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 4.2e-89 332.0 270 67.0
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 3.5e-88 328.9 258 68.6
HPP92_000448 Vanilla planifolia HOM05D002880 ORTHO05D003450 4.6e-88 328.6 270 64.8
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 6.0e-88 328.2 257 67.3
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 3.0e-87 325.9 257 66.5
Cpa.g.sc6.247 Carica papaya HOM05D002880 ORTHO05D003450 3.9e-87 325.5 259 70.3
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 1.9e-86 323.2 257 65.8
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 1.9e-86 323.2 257 65.8
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 5.8e-83 311.6 268 60.1
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 6.5e-82 308.1 258 64.0
TPR.G18175 Trifolium pratense HOM05D002880 ORTHO05D003450 8.4e-82 307.8 258 65.1
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 1.1e-81 307.4 260 64.6
Nitab4.5_0005660g0030 Nicotiana tabacum HOM05D002880 ORTHO05D003450 9.3e-81 304.3 255 63.5
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 6.0e-80 301.6 271 60.5
Nitab4.5_0003382g0080 Nicotiana tabacum HOM05D002880 ORTHO05D003450 3.9e-79 298.9 252 63.5
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 3.7e-77 292.4 262 61.8
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 1.3e-74 283.9 261 60.2
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 1.6e-69 266.9 258 55.0
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 2.0e-59 233.4 176 68.8
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 2.6e-59 233.0 202 63.9
Hma1.2p1_0258F.1_g104160 Hydrangea macrophylla HOM05D002880 ORTHO05D003450 1.8e-55 220.3 252 50.8
ATR0633G003 Amborella trichopoda HOM05D002880 ORTHO05D003450 2.8e-53 213.0 126 79.4
ATR0560G004 Amborella trichopoda HOM05D002880 ORTHO05D003450 1.4e-52 210.7 126 78.6
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 2.1e-48 196.8 229 48.5
MELO3C027087.2 Cucumis melo HOM05D002880 ORTHO05D003450 2.0e-35 153.7 181 51.4
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 6.5e-34 148.7 394 32.7
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 2.8e-29 133.3 252 32.5
ATR0259G001 Amborella trichopoda HOM05D002880 ORTHO05D003450 1.7e-26 124.0 145 51.7
MELO3C000137.2 Cucumis melo HOM05D002880 ORTHO05D003450 1.2e-24 117.9 77 81.8
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 4.3e-17 92.8 287 28.2
TAR381G0408 Trochodendron aralioides HOM05D002880 ORTHO05D003450 1.5e-14 84.3 62 71.0
Lsat_1_v5_gn_9_110060 Lactuca sativa HOM05D002880 ORTHO05D002254 2.3e-07 60.5 35 82.9


User provided reference genes

Program Settings