Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 0.0e+00 1606.3 831 100.0
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 0.0e+00 1265.4 799 83.6
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1131.3 820 72.0
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1125.9 819 71.6
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 0.0e+00 1108.6 807 73.0
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 3.6e-309 1064.7 805 69.9
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 1.1e-270 936.8 796 60.3
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 2.6e-267 925.6 831 58.8
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 4.7e-264 914.8 785 60.4
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 2.4e-260 902.5 803 57.4
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 7.7e-259 897.5 772 60.4
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 2.3e-255 885.9 801 57.6
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 3.3e-254 882.1 841 56.5
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 5.5e-249 864.8 788 57.0
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 5.5e-249 864.8 807 56.6
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 1.4e-244 850.1 788 56.0
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 7.0e-244 847.8 771 57.1
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 7.7e-243 844.3 770 59.9
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 2.9e-242 842.4 747 60.9
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.1e-241 840.5 801 56.3
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 1.6e-240 836.6 807 56.6
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 1.2e-238 830.5 801 56.4
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.3e-237 827.0 781 53.8
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 2.4e-236 822.8 830 53.6
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 4.1e-236 822.0 827 54.7
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 1.6e-235 820.1 827 54.9
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 2.7e-235 819.3 783 56.6
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 4.6e-227 792.0 802 53.0
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.7e-226 790.0 915 50.2
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.1e-225 787.3 767 55.4
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 2.1e-224 783.1 859 50.4
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 3.6e-224 782.3 773 54.5
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 6.2e-224 781.6 806 54.7
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 1.5e-222 776.9 793 54.7
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 1.4e-220 770.4 741 57.4
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 4.6e-219 765.4 815 52.9
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 7.8e-219 764.6 616 63.8
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 6.6e-218 761.5 792 51.5
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 2.5e-217 759.6 772 50.5
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 3.3e-217 759.2 774 51.6
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 1.1e-215 754.2 773 52.4
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 2.0e-214 750.0 783 50.8
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 1.3e-213 747.3 769 51.5
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 1.7e-213 746.9 774 50.9
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.1e-212 744.2 778 51.3
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 1.9e-212 743.4 794 52.3
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 2.4e-212 743.0 802 51.0
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 3.2e-212 742.7 770 51.9
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 3.2e-212 742.7 770 51.9
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 1.0e-210 737.6 769 51.1
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.3e-210 737.3 779 51.1
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 3.0e-210 736.1 794 51.0
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 1.9e-209 733.4 780 50.4
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 3.3e-209 732.6 811 53.1
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 9.5e-209 731.1 769 51.0
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 9.5e-209 731.1 768 50.4
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 1.2e-208 730.7 772 50.8
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 2.8e-208 729.6 827 48.7
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 4.7e-208 728.8 791 50.7
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 2.6e-206 723.0 801 49.3
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 5.8e-206 721.8 761 52.0
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 5.8e-206 721.8 774 50.5
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 5.8e-206 721.8 773 51.2
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 7.6e-206 721.5 800 49.0
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.2e-205 719.9 842 48.3
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 4.9e-205 718.8 754 52.8
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 2.3e-202 709.9 789 49.6
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 8.6e-202 708.0 793 48.7
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.1e-201 707.6 844 48.1
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 4.3e-201 705.7 820 49.1
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 3.6e-200 702.6 787 48.3
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 6.9e-199 698.4 776 50.6
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 2.4e-196 689.9 776 47.9
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 2.3e-194 683.3 778 48.2
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 5.1e-194 682.2 722 50.4
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 3.8e-189 666.0 780 49.9
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 6.0e-187 658.7 840 45.0
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 4.5e-182 642.5 762 47.0
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 4.9e-181 639.0 835 45.0
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 8.7e-178 628.2 811 45.6
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 6.9e-175 618.6 795 43.1
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 2.7e-171 606.7 564 56.6
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 3.5e-171 606.3 864 40.7
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 1.1e-169 601.3 801 45.2
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.5e-169 600.1 641 52.4
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 4.1e-167 592.8 806 44.2
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 7.6e-166 588.6 591 52.8
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 7.2e-164 582.0 601 50.7
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 1.2e-163 581.3 618 50.6
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 6.1e-163 578.9 634 53.2
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 6.7e-162 575.5 698 47.0
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 1.0e-157 561.6 590 50.2
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 6.5e-149 532.3 796 37.7
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 1.6e-142 511.1 544 51.3
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 2.0e-129 467.6 620 43.4
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 9.5e-124 448.7 541 45.8
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 5.0e-109 399.8 654 39.3
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 1.7e-101 374.8 459 44.2
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 3.9e-101 373.6 358 54.2
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 3.3e-68 264.2 262 53.4
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 1.4e-66 258.8 340 43.8
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 4.2e-63 247.3 374 43.3
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 5.6e-60 236.9 564 34.0
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 1.6e-54 218.8 209 51.7
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 1.8e-53 215.3 700 26.7
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 1.8e-50 205.3 758 27.0
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.0e-48 199.5 470 30.4
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 1.8e-45 188.7 632 25.2
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.8e-45 188.7 146 67.1
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.8e-45 188.7 146 67.1
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 5.1e-45 187.2 166 60.2
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 2.5e-44 184.9 159 59.1
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 3.3e-44 184.5 594 24.9
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 1.8e-37 162.2 154 53.9
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 1.2e-30 139.4 118 56.8
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 3.9e-29 134.4 150 45.3
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 3.9e-29 134.4 150 45.3
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 1.1e-26 126.3 118 54.2
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 3.0e-21 108.2 93 55.9
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 3.3e-20 104.8 87 58.6
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 1.5e-15 89.4 79 58.2
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 1.5e-12 79.3 77 55.8
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.5e-12 79.3 58 70.7
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 9.8e-12 76.6 82 51.2
Aqoxy5G04247 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 5.0e-08 64.3 371 21.3
Cfa008881 Carpinus fangiana HOM05D005706 ORTHO05D007474 3.3e-07 61.6 205 24.9
CANSAT64G1878 Cannabis sativa HOM05D005706 ORTHO05D007474 4.2e-07 61.2 205 24.9
Haze_11910 Corylus avellana HOM05D005706 ORTHO05D007474 4.2e-07 61.2 205 24.9
TAR622G0768 Trochodendron aralioides HOM05D005706 ORTHO05D007474 4.2e-07 61.2 211 22.7
PGR102G0141 Punica granatum HOM05D005706 ORTHO05D007474 5.5e-07 60.8 211 23.2
Actinidia16166 Actinidia chinensis HOM05D005706 ORTHO05D007474 7.2e-07 60.5 170 24.7
TWI31G0688 Tripterygium wilfordii HOM05D005706 ORTHO05D007474 9.5e-07 60.1 202 24.3
CDE05G2142 Ceratophyllum demersum HOM05D005706 ORTHO05D007474 1.6e-06 59.3 205 23.4
QL12p030791 Quercus lobata HOM05D005706 ORTHO05D007474 2.1e-06 58.9 205 23.9
Sed0000601 Sechium edule HOM05D005706 ORTHO05D007474 2.1e-06 58.9 144 24.3
SalBow4G1958 Salvia bowleyana HOM05D000001 ORTHO05D000003 2.8e-06 58.5 364 19.2
MELO3C012153.2 Cucumis melo HOM05D005706 ORTHO05D007474 4.7e-06 57.8 144 24.3
FAN12G1642 Fragaria x ananassa HOM05D005706 ORTHO05D007474 4.7e-06 57.8 146 26.7
MD16G1061200 Malus domestica HOM05D005706 ORTHO05D007474 4.7e-06 57.8 205 22.9
CsaV3_5G033320 Cucumis sativus L. HOM05D005706 ORTHO05D007474 6.1e-06 57.4 144 24.3
FvH4_4g30080 Fragaria vesca HOM05D005706 ORTHO05D007474 6.1e-06 57.4 146 26.7
FAN17G2637 Fragaria x ananassa HOM05D005706 ORTHO05D007474 6.1e-06 57.4 146 26.7
Aqoxy1G01503 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 8.0e-06 57.0 281 23.1
Aqoxy1G01507 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 8.0e-06 57.0 281 23.1
CiPaw.05G125300 Carya illinoinensis HOM05D005706 ORTHO05D007474 8.0e-06 57.0 205 22.4
Dinv16733 Davidia involucrata HOM05D005706 ORTHO05D007474 8.0e-06 57.0 144 24.3


User provided reference genes

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