Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 4.0e-196 688.0 359 100.0
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 1.7e-170 602.8 403 82.9
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 2.4e-161 572.4 398 79.1
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 7.1e-161 570.9 398 78.6
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.2e-160 570.1 398 78.4
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 2.1e-160 569.3 398 78.6
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 3.5e-160 568.5 397 78.6
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 4.6e-160 568.2 398 78.1
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 1.3e-159 566.6 398 78.1
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 3.0e-159 565.5 398 78.4
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 1.1e-158 563.5 398 77.6
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 1.5e-158 563.1 398 77.6
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 1.9e-158 562.8 398 78.4
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 2.5e-158 562.4 398 77.6
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 5.6e-158 561.2 398 77.6
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 5.6e-158 561.2 398 77.4
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 9.6e-158 560.5 398 77.1
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 1.3e-157 560.1 398 77.1
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 1.3e-157 560.1 398 76.9
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 2.1e-157 559.3 398 77.4
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 2.1e-157 559.3 398 77.1
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 2.8e-157 558.9 398 76.6
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 2.8e-157 558.9 398 76.9
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 3.7e-157 558.5 398 76.9
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 4.8e-157 558.1 398 76.9
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 4.8e-157 558.1 398 77.1
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 6.2e-157 557.8 398 77.1
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 8.2e-157 557.4 398 76.9
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 1.8e-156 556.2 398 76.9
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 2.4e-156 555.8 398 76.1
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 2.4e-156 555.8 398 76.1
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.1e-156 555.4 398 76.4
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.1e-156 555.4 398 76.4
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 3.1e-156 555.4 398 76.4
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 3.1e-156 555.4 398 76.4
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 3.1e-156 555.4 398 76.1
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 4.0e-156 555.1 398 76.4
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 6.9e-156 554.3 398 76.9
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 1.5e-155 553.1 422 73.9
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 2.0e-155 552.7 383 78.6
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 3.4e-155 552.0 398 76.6
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 7.6e-155 550.8 424 73.1
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 2.2e-154 549.3 398 75.9
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 2.2e-154 549.3 398 75.6
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 2.2e-154 549.3 398 75.6
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 2.2e-154 549.3 398 75.6
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 4.9e-154 548.1 383 78.3
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 6.5e-154 547.7 398 75.6
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 1.1e-153 547.0 398 76.1
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 2.5e-153 545.8 398 74.9
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 3.2e-153 545.4 398 75.9
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 3.2e-153 545.4 398 75.9
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 4.2e-153 545.0 403 75.4
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 4.2e-153 545.0 398 75.6
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 5.5e-153 544.7 401 75.3
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 5.5e-153 544.7 398 75.6
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 1.2e-152 543.5 399 75.2
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 1.2e-152 543.5 399 75.2
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 2.1e-152 542.7 398 73.6
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 3.5e-152 542.0 398 73.4
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 3.5e-152 542.0 399 74.9
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 1.3e-151 540.0 398 74.6
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 1.3e-151 540.0 398 74.1
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.8e-151 539.7 398 73.1
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 2.3e-151 539.3 398 73.4
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 3.9e-151 538.5 399 74.9
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 5.1e-151 538.1 398 73.4
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 1.5e-150 536.6 399 74.2
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 1.9e-150 536.2 411 72.0
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 5.7e-150 534.6 398 73.9
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 5.7e-150 534.6 399 73.7
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 9.7e-150 533.9 398 74.6
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 2.2e-149 532.7 368 79.9
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 4.8e-149 531.6 398 73.1
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 8.2e-149 530.8 398 74.1
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 1.1e-148 530.4 398 73.6
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 1.8e-148 529.6 392 73.5
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 4.1e-148 528.5 398 72.9
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 4.1e-148 528.5 490 63.5
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 2.6e-147 525.8 398 71.4
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 1.3e-146 523.5 398 71.9
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 2.2e-146 522.7 398 71.6
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 1.1e-145 520.4 406 71.4
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 1.2e-144 516.9 398 70.9
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 2.1e-144 516.2 501 61.9
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 3.6e-144 515.4 398 70.9
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 1.0e-143 513.8 398 70.6
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 1.4e-143 513.5 398 70.9
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 2.3e-143 512.7 400 69.8
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 3.0e-143 512.3 398 70.1
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 3.0e-143 512.3 398 70.1
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 5.1e-143 511.5 398 69.8
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 6.7e-143 511.1 402 69.9
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 2.0e-142 509.6 392 72.2
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 2.5e-142 509.2 398 69.8
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 2.5e-142 509.2 398 69.8
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 2.5e-142 509.2 398 69.8
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 5.7e-142 508.1 477 62.1
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 7.4e-142 507.7 398 69.8
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 7.4e-142 507.7 398 69.8
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 7.4e-142 507.7 398 69.8
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 7.4e-142 507.7 398 70.1
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 2.2e-141 506.1 398 71.6
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 2.8e-141 505.8 398 69.6
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 3.7e-141 505.4 398 69.1
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 3.7e-141 505.4 398 69.6
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 3.7e-141 505.4 398 69.6
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 1.7e-138 496.5 440 63.6
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 3.8e-138 495.4 398 70.4
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 2.1e-136 489.6 337 79.2
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 3.6e-136 488.8 355 75.2
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 4.7e-136 488.4 398 69.8
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 1.5e-134 483.4 371 72.5
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 7.4e-134 481.1 337 77.2
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 4.1e-132 475.3 359 72.4
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 1.2e-131 473.8 398 64.3
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 3.0e-127 459.1 419 66.1
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 3.9e-127 458.8 397 62.2
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 8.8e-127 457.6 398 62.3
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 2.2e-125 453.0 398 61.3
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 2.6e-110 402.9 396 57.1
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 3.7e-109 399.1 337 65.3
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 3.6e-104 382.5 272 77.9
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 7.3e-97 358.2 216 86.6
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 1.8e-87 327.0 312 62.2
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 3.9e-82 309.3 211 74.9
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 5.6e-81 305.4 214 75.2
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 7.5e-78 295.0 395 43.8
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 3.7e-77 292.7 407 42.5
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 4.7e-72 275.8 226 69.9
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 4.8e-64 249.2 150 86.0
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.5e-62 244.2 150 84.0
PRCOL_00006114 Prasinoderma coloniale HOM05D005164 ORTHO05D006398 1.6e-59 234.2 401 39.9
MBI17_g35116_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 1.0e-50 204.9 149 74.5
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 3.3e-49 199.9 146 69.9
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 1.5e-41 174.5 243 49.4
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 2.2e-37 160.6 95 87.4
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 2.2e-37 160.6 95 87.4
Cfa024373 Carpinus fangiana HOM05D005164 ORTHO05D006398 7.4e-33 145.6 292 34.6
Haze_26904 Corylus avellana HOM05D005164 ORTHO05D006398 3.0e-18 97.1 205 34.1
TPR.G136 Trifolium pratense HOM05D005164 ORTHO05D006398 7.0e-15 85.9 46 82.6
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 9.1e-15 85.5 66 71.2
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 2.8e-08 63.9 42 73.8


User provided reference genes

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