Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.4e-119 433.0 216 100.0
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 6.5e-109 397.5 217 93.1
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.6e-105 385.6 216 88.4
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.5e-100 369.8 216 84.7
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 8.0e-99 364.0 212 84.4
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 6.7e-98 360.9 216 81.0
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.0e-97 359.4 216 82.4
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.7e-93 346.3 217 77.9
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 3.8e-93 345.1 220 78.2
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.1e-92 343.6 216 77.8
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 9.4e-92 340.5 216 77.8
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.6e-91 339.7 214 77.1
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.4e-90 336.7 206 79.1
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 2.3e-90 335.9 214 77.1
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 8.8e-90 334.0 216 76.4
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.2e-89 333.6 208 77.9
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 1.2e-89 333.6 199 81.9
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 1.2e-89 333.6 218 76.6
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 3.4e-89 332.0 217 74.2
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 7.5e-89 330.9 214 74.3
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 9.8e-89 330.5 216 75.9
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 9.8e-89 330.5 216 75.9
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 2.2e-88 329.3 215 75.3
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.2e-88 329.3 218 76.1
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 2.8e-88 328.9 215 75.3
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 3.7e-88 328.6 218 73.9
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 3.7e-88 328.6 216 75.9
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 6.3e-88 327.8 216 75.5
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 2.4e-87 325.9 218 74.8
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 4.1e-87 325.1 216 75.9
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 4.1e-87 325.1 209 76.1
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 4.1e-87 325.1 216 72.2
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 4.1e-87 325.1 216 72.2
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 1.3e-85 320.1 211 74.9
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 2.2e-85 319.3 216 71.3
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 2.2e-85 319.3 202 78.7
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 6.5e-85 317.8 211 73.9
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 6.5e-85 317.8 216 72.7
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 6.5e-85 317.8 220 71.8
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 8.5e-85 317.4 216 72.2
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.9e-84 316.2 216 70.8
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 1.9e-84 316.2 212 73.6
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 2.5e-84 315.8 215 73.0
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 3.2e-84 315.5 214 71.0
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 3.2e-84 315.5 217 72.4
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 3.2e-84 315.5 216 73.1
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 4.2e-84 315.1 216 71.8
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.5e-84 314.7 216 69.9
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 5.5e-84 314.7 210 73.8
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 2.1e-83 312.8 216 71.3
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 2.7e-83 312.4 216 71.3
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 4.7e-83 311.6 207 72.5
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 6.1e-83 311.2 221 69.7
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 1.0e-82 310.5 216 71.3
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.4e-82 310.1 202 76.7
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 2.3e-82 309.3 214 71.0
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 4.0e-82 308.5 216 70.8
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 5.2e-82 308.1 214 73.4
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 5.2e-82 308.1 222 69.8
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 8.8e-82 307.4 216 72.2
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 2.6e-81 305.8 216 69.9
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 2.6e-81 305.8 213 71.4
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 2.6e-81 305.8 218 69.3
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.6e-81 305.8 214 71.0
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 3.4e-81 305.4 216 69.9
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 4.4e-81 305.1 216 69.9
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 4.4e-81 305.1 214 72.0
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 7.5e-81 304.3 214 70.6
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 7.5e-81 304.3 214 70.6
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.7e-80 303.1 215 71.6
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 2.2e-80 302.8 199 75.4
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 2.2e-80 302.8 215 71.6
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 3.7e-80 302.0 211 70.6
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 3.7e-80 302.0 218 69.7
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 1.8e-79 299.7 222 65.8
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.8e-79 299.7 206 71.4
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 2.4e-79 299.3 214 67.3
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 4.1e-79 298.5 214 69.2
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.4e-79 298.1 213 71.4
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 7.0e-79 297.7 186 75.3
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 7.0e-79 297.7 249 62.2
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.7e-78 295.8 187 75.9
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 2.7e-78 295.8 216 69.0
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 3.5e-78 295.4 220 65.9
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 7.7e-78 294.3 224 64.3
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 7.7e-78 294.3 216 68.1
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.0e-77 293.9 223 65.0
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 1.3e-77 293.5 224 64.3
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 1.3e-77 293.5 224 64.3
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.7e-77 293.1 224 64.3
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.7e-77 293.1 224 64.3
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 1.7e-77 293.1 204 72.5
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.3e-77 292.7 205 68.8
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 3.8e-77 292.0 223 63.2
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 5.0e-77 291.6 218 66.5
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.1e-76 290.4 213 67.6
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 1.1e-76 290.4 217 66.8
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 1.9e-76 289.7 212 69.8
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 2.5e-76 289.3 220 64.1
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 2.5e-76 289.3 220 70.0
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.5e-76 289.3 221 64.3
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 4.3e-76 288.5 209 67.9
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 5.6e-76 288.1 224 62.9
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 7.3e-76 287.7 224 62.9
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 7.3e-76 287.7 218 66.1
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.6e-75 286.6 188 71.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 4.0e-74 282.0 222 63.5
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 8.9e-74 280.8 172 77.3
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 9.8e-73 277.3 218 62.8
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 2.2e-72 276.2 184 75.0
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 3.7e-72 275.4 219 68.9
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 4.9e-72 275.0 221 62.4
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 2.4e-71 272.7 221 65.2
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 2.4e-71 272.7 221 65.2
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 4.1e-71 271.9 172 75.0
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 7.0e-71 271.2 217 60.8
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 5.9e-70 268.1 173 74.0
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 1.8e-66 256.5 215 57.2
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.1e-66 255.8 254 56.7
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.1e-66 255.8 254 56.7
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 1.6e-62 243.4 182 67.6
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 5.0e-61 238.4 197 61.4
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 5.6e-60 235.0 146 75.3
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.2e-58 228.4 145 76.6
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 2.9e-56 222.6 145 73.1
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 2.9e-56 222.6 150 75.3
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 1.9e-52 209.9 158 63.9
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 6.8e-50 201.4 141 66.7
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 5.8e-49 198.4 197 49.2
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.2e-48 196.4 125 75.2
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 1.1e-47 194.1 220 44.1
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 1.6e-46 190.3 163 56.4
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.7e-45 186.8 145 64.8
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 1.1e-44 184.1 139 67.6
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 5.8e-41 171.8 142 57.7
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.9e-39 166.8 107 73.8
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 2.4e-39 166.4 210 42.9
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 9.3e-39 164.5 153 50.3
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 4.6e-38 162.2 124 65.3
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 5.1e-37 158.7 178 44.9
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 2.4e-34 149.8 207 43.5
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 3.1e-34 149.4 148 48.0
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 1.2e-33 147.5 212 37.7
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 9.3e-31 137.9 180 41.1
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.4e-23 114.0 77 66.2
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 1.9e-23 113.6 91 65.9
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 7.9e-22 108.2 75 66.7
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 3.3e-20 102.8 144 38.2
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 1.2e-17 94.4 77 59.7
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 1.7e-16 90.5 50 76.0
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 1.1e-15 87.8 69 58.0
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 1.9e-15 87.0 49 73.5
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 3.2e-15 86.3 49 77.6
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 7.1e-15 85.1 49 75.5
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 1.8e-13 80.5 77 57.1
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.9e-12 77.0 58 60.3
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 1.1e-10 71.2 44 79.5
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 3.1e-10 69.7 71 56.3
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 9.0e-10 68.2 56 60.7
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 9.0e-10 68.2 44 70.5
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 1.4e-07 60.8 33 75.8
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 1.9e-07 60.5 90 34.4
PSO447G0101 Papaver somniferum HOM05D004585 ORTHO05D037280 2.5e-07 60.1 33 75.8
PSO063G7338 Papaver somniferum HOM05D004585 ORTHO05D302184 9.3e-07 58.2 127 35.4
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.2e-06 57.8 85 32.9
CAN.G530.9 Capsicum annuum HOM05D000115 ORTHO05D000645 1.6e-06 57.4 38 71.1
CSS0022791 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.6e-06 55.8 85 31.8
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.6e-06 55.8 85 31.8
CSS0043481 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 4.6e-06 55.8 85 31.8
Lj1P996T49 Lonicera japonica HOM05D003145 ORTHO05D003586 4.6e-06 55.8 86 36.0
Lsat_1_v5_gn_8_8220 Lactuca sativa HOM05D001543 ORTHO05D001722 7.9e-06 55.1 66 39.4


User provided reference genes

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