Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 7.7e-57 223.8 129 100.0
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 7.0e-34 147.5 122 68.9
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 7.7e-33 144.1 122 67.2
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 5.6e-23 111.3 107 57.9
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 4.6e-17 91.7 140 42.1
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 5.9e-17 91.3 126 38.1
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 7.8e-17 90.9 85 57.6
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.3e-16 90.1 123 42.3
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.3e-16 89.4 125 43.2
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 8.6e-16 87.4 123 40.7
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.1e-15 87.0 119 36.1
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.9e-15 86.3 123 42.3
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 9.5e-15 84.0 132 39.4
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 9.5e-15 84.0 118 41.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.2e-14 83.6 124 46.0
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.6e-14 83.2 122 40.2
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 3.6e-14 82.0 121 38.0
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 1.1e-13 80.5 117 35.9
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.1e-13 80.5 123 42.3
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.8e-13 79.7 121 40.5
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.8e-13 79.7 121 40.5
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.3e-13 79.3 98 43.9
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 5.2e-13 78.2 126 42.1
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.2e-12 77.0 107 41.1
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 2.0e-12 76.3 122 40.2
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 3.4e-12 75.5 119 38.7
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 3.4e-12 75.5 127 40.2
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 4.4e-12 75.1 126 41.3
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 9.8e-12 73.9 122 36.1
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 4.9e-11 71.6 101 40.6
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 8.3e-11 70.9 109 40.4
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.1e-10 70.5 98 41.8
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.4e-10 70.1 128 30.5
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 1.4e-10 70.1 103 38.8
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.4e-10 70.1 122 34.4
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.4e-10 70.1 92 41.3
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.9e-10 69.7 94 38.3
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 1.9e-10 69.7 120 32.5
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 1.9e-10 69.7 115 37.4
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.9e-10 69.7 99 39.4
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 2.4e-10 69.3 119 36.1
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 3.2e-10 68.9 134 33.6
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.2e-10 68.9 134 33.6
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.2e-10 68.9 125 35.2
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 3.2e-10 68.9 100 37.0
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 5.4e-10 68.2 109 38.5
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 5.4e-10 68.2 109 38.5
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 5.4e-10 68.2 82 43.9
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 1.2e-09 67.0 96 41.7
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.2e-09 67.0 94 38.3
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.6e-09 66.6 99 40.4
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 2.0e-09 66.2 104 35.6
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 2.0e-09 66.2 89 38.2
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 2.0e-09 66.2 94 39.4
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.7e-09 65.9 103 36.9
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 2.7e-09 65.9 117 35.9
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 3.5e-09 65.5 101 36.6
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 3.5e-09 65.5 94 36.2
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 6.0e-09 64.7 134 32.8
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 6.0e-09 64.7 127 32.3
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 7.8e-09 64.3 93 36.6
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 7.8e-09 64.3 134 34.3
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.0e-08 63.9 103 35.0
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.0e-08 63.9 127 37.8
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 1.7e-08 63.2 123 35.0
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.7e-08 63.2 94 37.2
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 2.3e-08 62.8 85 40.0
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 3.0e-08 62.4 116 33.6
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 5.0e-08 61.6 100 33.0
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.5e-07 60.1 122 36.9
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.5e-07 59.3 89 37.1
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 7.3e-07 57.8 103 35.0
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 9.5e-07 57.4 103 35.0
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 9.5e-07 57.4 103 35.0
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 9.5e-07 57.4 103 35.0
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 9.5e-07 57.4 82 36.6
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 9.5e-07 57.4 99 28.3
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 9.5e-07 57.4 102 39.2
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.6e-06 56.6 101 30.7
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 2.1e-06 56.2 103 34.0
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 2.1e-06 56.2 96 41.7
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 3.6e-06 55.5 89 31.5
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 8.1e-06 54.3 99 27.3


User provided reference genes

Program Settings