Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 9.5e-151 537.3 389 100.0
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 2.7e-145 519.2 389 92.0
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.3e-128 463.8 411 71.8
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 3.3e-127 459.1 399 69.4
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 2.3e-125 453.0 392 74.0
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 4.0e-125 452.2 422 70.9
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 4.4e-124 448.7 234 88.5
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 5.8e-124 448.4 235 90.2
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 7.6e-124 448.0 386 73.3
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 7.6e-124 448.0 400 69.5
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 2.9e-123 446.0 382 60.7
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 3.7e-123 445.7 405 68.9
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 8.3e-123 444.5 389 62.5
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 7.1e-122 441.4 235 88.5
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 1.2e-121 440.7 426 71.6
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 2.1e-121 439.9 236 89.4
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 4.6e-121 438.7 420 76.9
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.0e-121 438.3 421 76.7
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.0e-120 437.6 236 88.1
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 1.3e-120 437.2 416 72.4
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.3e-120 437.2 235 87.2
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.3e-120 437.2 235 87.2
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 2.3e-120 436.4 441 68.7
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 3.0e-120 436.0 236 87.3
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 3.0e-120 436.0 234 86.8
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 3.0e-120 436.0 236 87.7
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 3.9e-120 435.6 236 87.3
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 5.1e-120 435.3 419 73.7
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 6.6e-120 434.9 438 66.0
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 6.6e-120 434.9 419 69.5
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 6.6e-120 434.9 235 86.8
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 8.6e-120 434.5 235 86.0
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 8.6e-120 434.5 235 86.4
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.9e-119 433.3 235 88.9
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 3.3e-119 432.6 433 67.2
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 3.3e-119 432.6 235 85.5
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 4.3e-119 432.2 235 86.4
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 7.3e-119 431.4 235 86.8
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 1.2e-118 430.6 231 88.3
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 2.1e-118 429.9 242 85.1
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 2.8e-118 429.5 390 62.6
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 3.6e-118 429.1 419 69.0
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.7e-118 428.7 231 87.4
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 4.7e-118 428.7 395 74.4
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.2e-118 428.3 231 87.4
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.4e-117 427.2 235 84.3
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.8e-117 426.8 231 87.0
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 2.4e-117 426.4 397 67.8
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 4.0e-117 425.6 234 86.8
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 5.2e-117 425.2 231 85.7
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.8e-117 424.9 231 86.6
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 6.8e-117 424.9 231 85.3
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 6.8e-117 424.9 235 85.5
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 8.9e-117 424.5 232 85.3
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 1.5e-116 423.7 229 86.5
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 2.0e-116 423.3 402 71.1
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.7e-115 420.2 390 77.2
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 2.2e-115 419.9 430 71.9
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 2.9e-115 419.5 234 83.3
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 3.8e-115 419.1 234 83.3
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 4.9e-115 418.7 234 83.3
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 4.9e-115 418.7 239 84.1
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 4.9e-115 418.7 234 83.3
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 6.4e-115 418.3 234 83.3
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 8.4e-115 417.9 233 83.3
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 1.4e-114 417.2 227 85.5
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 2.4e-114 416.4 256 79.3
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.4e-114 415.2 381 69.0
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 9.3e-114 414.5 234 82.5
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 2.1e-113 413.3 409 70.2
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 4.6e-113 412.1 256 77.7
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 6.0e-113 411.8 371 58.2
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 7.8e-113 411.4 403 68.7
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 1.0e-112 411.0 234 82.9
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.3e-112 410.6 371 65.5
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 5.1e-112 408.7 234 81.6
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 1.9e-111 406.8 388 61.6
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 5.6e-111 405.2 407 68.3
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 5.6e-111 405.2 458 58.7
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 9.6e-111 404.4 388 70.4
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 2.8e-110 402.9 397 72.0
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 4.8e-110 402.1 389 74.3
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 6.2e-110 401.7 389 66.8
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 1.4e-109 400.6 388 70.1
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.4e-109 400.6 389 66.1
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 1.4e-109 400.6 476 61.8
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 2.4e-109 399.8 216 87.0
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 2.4e-109 399.8 471 60.1
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 4.0e-109 399.1 233 81.1
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 6.9e-109 398.3 230 81.7
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 9.0e-109 397.9 393 57.8
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 1.2e-108 397.5 299 67.2
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 3.8e-107 392.5 234 77.8
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 4.9e-107 392.1 229 81.2
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 6.4e-107 391.7 319 63.6
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 5.4e-106 388.7 210 87.1
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.5e-103 380.6 226 79.6
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.3e-103 379.4 228 77.6
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.3e-103 379.4 228 77.6
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 3.3e-103 379.4 228 77.6
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 2.1e-102 376.7 389 63.8
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 4.8e-102 375.6 441 51.7
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 4.6e-97 359.0 231 73.6
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.8e-88 330.5 181 86.7
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 3.3e-87 326.2 185 83.8
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 3.3e-87 326.2 182 86.3
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.5e-84 315.8 155 91.0
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.6e-78 297.4 149 89.3
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.1e-77 294.7 175 79.4
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.0e-71 273.9 137 88.3
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 1.8e-69 267.3 311 64.0
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 2.7e-65 253.4 211 60.7
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.0e-64 251.5 144 81.2
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 2.8e-62 243.4 140 83.6
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.3e-59 234.6 175 66.9
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 2.9e-59 233.4 211 55.0
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 1.9e-58 230.7 218 51.4
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 5.5e-58 229.2 133 82.7
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 3.6e-57 226.5 139 76.3
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 6.3e-54 215.7 112 86.6
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.0e-53 212.2 277 58.8
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 1.6e-49 201.1 102 91.2
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.2e-47 194.9 120 79.2
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.7e-46 191.0 195 56.4
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 2.8e-46 190.3 109 86.2
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.8e-46 189.5 96 88.5
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-45 188.3 97 89.7
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 4.5e-44 183.0 112 80.4
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 4.2e-42 176.4 96 82.3
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.6e-41 174.5 129 65.1
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 2.3e-40 170.6 97 80.4
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.3e-38 164.9 264 61.0
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 1.3e-38 164.9 100 82.0
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 4.9e-38 162.9 84 88.1
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 7.0e-37 159.1 86 86.0
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 7.0e-37 159.1 83 86.7
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 2.9e-35 153.7 80 90.0
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.2e-33 148.3 80 87.5
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 1.4e-32 144.8 80 85.0
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 4.9e-30 136.3 88 75.0
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 5.4e-29 132.9 89 73.0
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.9e-26 124.4 84 72.6
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 3.6e-25 120.2 256 64.8
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.5e-23 114.8 77 74.0
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 9.2e-21 105.5 60 83.3
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 9.2e-21 105.5 74 64.9
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.0e-19 102.1 64 84.4
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 5.0e-19 99.8 68 64.7
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-15 88.6 237 56.1
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.2e-14 84.3 53 84.9
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 6.4e-14 82.8 61 57.4
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.4e-13 81.6 277 49.1
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 4.6e-12 76.6 43 83.7
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 3.3e-10 70.5 40 87.5
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 2.3e-08 64.3 149 28.9
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.3e-08 64.3 148 29.1
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.3e-08 64.3 148 29.1
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 4.0e-08 63.5 149 28.2
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 5.2e-08 63.2 161 26.7
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 5.2e-08 63.2 149 28.2
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.5e-07 61.6 46 63.0
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 2.0e-07 61.2 161 28.0
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.7e-06 57.0 148 27.0


User provided reference genes

Program Settings