Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20023 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 4.8e-79 297.7 149 100.0
Rhsim05G0179600 Rhododendron simsii HOM05D001944 ORTHO05D002405 3.3e-43 178.7 118 78.0
Dinv37298 Davidia involucrata HOM05D001944 ORTHO05D002405 2.8e-42 175.6 132 67.4
Actinidia19662 Actinidia chinensis HOM05D001944 ORTHO05D002405 7.5e-40 167.5 133 62.4
GSVIVG01025216001 Vitis vinifera HOM05D001944 ORTHO05D002405 4.7e-34 148.3 134 55.2
DCAR_020831 Daucus carota HOM05D001944 ORTHO05D002405 4.9e-31 138.3 132 54.5
TAR636G3431 Trochodendron aralioides HOM05D001944 ORTHO05D002405 6.4e-31 137.9 132 54.5
TAR369G0775 Trochodendron aralioides HOM05D001944 ORTHO05D002405 8.4e-31 137.5 132 54.5
Peaxi162Scf00167g00092 Petunia axillaris HOM05D001944 ORTHO05D002405 1.1e-30 137.1 129 52.7
QL93p2013_0009 Quercus lobata HOM05D001944 ORTHO05D002405 1.1e-30 137.1 135 57.0
QL07p044103 Quercus lobata HOM05D001944 ORTHO05D002405 7.1e-30 134.4 135 56.3
Ca_08850_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 1.6e-29 133.3 135 52.6
arahy.Tifrunner.gnm1.ann1.Q55GHJ Arachis hypogaea HOM05D001944 ORTHO05D002405 2.1e-29 132.9 135 51.1
Nn2g13727 Nelumbo nucifera HOM05D001944 ORTHO05D002405 2.1e-29 132.9 132 53.8
Nitab4.5_0006619g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 6.0e-29 131.3 129 50.4
Duzib128G0909 Durio zibethinus HOM05D001944 ORTHO05D002405 7.8e-29 131.0 133 53.4
Glyma.03G181800 Glycine max HOM05D001944 ORTHO05D002405 1.0e-28 130.6 135 51.1
arahy.Tifrunner.gnm1.ann1.BHY38Y Arachis hypogaea HOM05D001944 ORTHO05D002405 1.7e-28 129.8 135 50.4
Cc01_g10870 Coffea canephora HOM05D001944 ORTHO05D002405 1.7e-28 129.8 131 50.4
TPR.G9371 Trifolium pratense HOM05D001944 ORTHO05D002405 1.7e-28 129.8 135 52.6
TAR623G0602 Trochodendron aralioides HOM05D001944 ORTHO05D002405 1.7e-28 129.8 132 50.8
Lalb_Chr25g0289071 Lupinus albus HOM05D001944 ORTHO05D002405 3.0e-28 129.0 138 51.4
Nitab4.5_0005320g0010 Nicotiana tabacum HOM05D001944 ORTHO05D002405 3.0e-28 129.0 132 53.0
Dinv32718 Davidia involucrata HOM05D001944 ORTHO05D002405 3.9e-28 128.6 130 50.8
Thecc.05G062600 Theobroma cacao HOM05D001944 ORTHO05D002405 3.9e-28 128.6 135 52.6
Nn2g11517 Nelumbo nucifera HOM05D001944 ORTHO05D002405 5.1e-28 128.3 132 47.0
Oeu056301.1 Olea europaea HOM05D001944 ORTHO05D002405 5.1e-28 128.3 131 47.3
CiPaw.14G085200 Carya illinoinensis HOM05D001944 ORTHO05D002405 6.6e-28 127.9 129 48.8
Solyc06g010240.3 Solanum lycopersicum HOM05D001944 ORTHO05D002405 1.5e-27 126.7 129 48.1
CAN.G171.6 Capsicum annuum HOM05D001944 ORTHO05D002405 2.5e-27 125.9 129 49.6
Lj1g0027821 Lotus japonicus HOM05D001944 ORTHO05D002405 3.3e-27 125.6 135 50.4
ATR0048G049 Amborella trichopoda HOM05D001944 ORTHO05D002405 4.3e-27 125.2 131 48.1
Nitab4.5_0000101g0280 Nicotiana tabacum HOM05D001944 ORTHO05D002405 5.6e-27 124.8 132 51.5
Sopen06g005090 Solanum pennellii HOM05D001944 ORTHO05D002405 5.6e-27 124.8 129 47.3
Solyc10g011940.1 Solanum lycopersicum HOM05D001944 ORTHO05D002405 7.3e-27 124.4 132 51.5
COL.COLO4_26992 Corchorus olitorius HOM05D001944 ORTHO05D002405 1.2e-26 123.6 135 51.1
PGSC0003DMG400019409 Solanum tuberosum HOM05D001944 ORTHO05D002405 1.2e-26 123.6 132 50.8
Sopen10g005720 Solanum pennellii HOM05D001944 ORTHO05D002405 1.6e-26 123.2 132 50.8
CSS0048984 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-26 122.9 84 72.6
TAR633G2605 Trochodendron aralioides HOM05D001944 ORTHO05D002405 2.8e-26 122.5 124 52.4
Cc06_g04010 Coffea canephora HOM05D001944 ORTHO05D002405 6.2e-26 121.3 132 54.5
Lj2C1021G5 Lonicera japonica HOM05D001944 ORTHO05D002405 8.1e-26 120.9 133 46.6
Medtr7g101465 Medicago truncatula HOM05D001944 ORTHO05D002405 8.1e-26 120.9 135 49.6
PSO063G0478 Papaver somniferum HOM05D001944 ORTHO05D002405 1.1e-25 120.6 130 45.4
QL01p026770 Quercus lobata HOM05D001944 ORTHO05D002405 1.4e-25 120.2 129 45.0
CDE02G2939 Ceratophyllum demersum HOM05D001944 ORTHO05D002405 3.1e-25 119.0 125 47.2
TWI79G1706 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 3.1e-25 119.0 132 46.2
ECA248G2804 Erigeron canadensis HOM05D001944 ORTHO05D002405 4.0e-25 118.6 105 53.3
Phvul.001G177901 Phaseolus vulgaris HOM05D001944 ORTHO05D002405 4.0e-25 118.6 135 47.4
Aqoxy1G01204 Aquilegia oxysepala HOM05D001944 ORTHO05D002405 5.2e-25 118.2 130 47.7
Ca_01379_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 5.2e-25 118.2 128 45.3
Ca_01395_v3 Cicer arietinum L. HOM05D001944 ORTHO05D002405 5.2e-25 118.2 128 45.3
PSO339G1466 Papaver somniferum HOM05D001944 ORTHO05D002405 5.2e-25 118.2 130 45.4
Cfa011296 Carpinus fangiana HOM05D001944 ORTHO05D002405 2.0e-24 116.3 139 43.9
Sc21g0003900 Simmondsia chinensis HOM05D001944 ORTHO05D002405 2.6e-24 115.9 131 45.8
Gohir.D08G216700 Gossypium hirsutum HOM05D001944 ORTHO05D002405 3.4e-24 115.5 124 46.8
Gohir.A08G199401 Gossypium hirsutum HOM05D001944 ORTHO05D002405 5.8e-24 114.8 124 46.8
TWI74G0797 Tripterygium wilfordii HOM05D001944 ORTHO05D002405 5.8e-24 114.8 135 51.1
Potri.013G006000 Populus trichocarpa HOM05D001944 ORTHO05D002405 9.9e-24 114.0 133 44.4
Psat3g043480 Pisum sativum HOM05D001944 ORTHO05D002405 1.3e-23 113.6 136 47.8
Potri.004G212700 Populus trichocarpa HOM05D001944 ORTHO05D002405 1.3e-23 113.6 123 47.2
Rhsim13G0096400 Rhododendron simsii HOM05D001944 ORTHO05D002405 2.9e-23 112.5 131 45.8
Migut.N02586 Erythranthe guttata HOM05D001944 ORTHO05D002405 3.8e-23 112.1 131 45.0
Os06g0102800 Oryza sativa ssp. japonica HOM05D001944 ORTHO05D002405 4.9e-23 111.7 132 43.9
Gorai.004G230500 Gossypium raimondii HOM05D001944 ORTHO05D002405 6.4e-23 111.3 124 45.2
vmacro03215 Vaccinium macrocarpon HOM05D001944 ORTHO05D002405 8.4e-23 110.9 131 45.8
Haze_23779 Corylus avellana HOM05D001944 ORTHO05D002405 1.1e-22 110.5 120 44.2
Prupe.6G104600 Prunus persica HOM05D001944 ORTHO05D002405 1.1e-22 110.5 132 44.7
MSTRG.17786 Avicennia marina HOM05D001944 ORTHO05D002405 1.4e-22 110.2 131 46.6
DCAR_006070 Daucus carota HOM05D001944 ORTHO05D002405 2.4e-22 109.4 124 45.2
SGA_v2.0_scaffold127G34027 Striga asiatica HOM05D001944 ORTHO05D002405 2.4e-22 109.4 131 44.3
PGR102G2473 Punica granatum HOM05D001944 ORTHO05D002405 3.2e-22 109.0 128 44.5
Thecc.09G343900 Theobroma cacao HOM05D001944 ORTHO05D002405 3.2e-22 109.0 133 42.1
ECA248G2037 Erigeron canadensis HOM05D001944 ORTHO05D002405 7.1e-22 107.8 113 47.8
Actinidia24118 Actinidia chinensis HOM05D001944 ORTHO05D002405 1.2e-21 107.1 120 49.2
EL10Ac9g22555 Beta vulgaris HOM05D001944 ORTHO05D002405 1.6e-21 106.7 114 49.1
Gohir.D05G104800 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.6e-21 106.7 125 44.8
Gorai.009G108800 Gossypium raimondii HOM05D001944 ORTHO05D002405 1.6e-21 106.7 125 44.8
Atru.chr8.1407 Acer truncatum HOM05D001944 ORTHO05D002405 2.1e-21 106.3 124 43.5
Zm00001eb379660 Zea mays HOM05D001944 ORTHO05D002405 2.1e-21 106.3 127 42.5
Duzib168G0647 Durio zibethinus HOM05D001944 ORTHO05D002405 2.7e-21 105.9 124 46.0
MD03G1121600 Malus domestica HOM05D001944 ORTHO05D002405 2.7e-21 105.9 130 46.2
MD11G1139900 Malus domestica HOM05D001944 ORTHO05D002405 2.7e-21 105.9 130 45.4
Sed0006438 Sechium edule HOM05D001944 ORTHO05D002405 7.8e-21 104.4 132 43.2
SGA_v2.0_scaffold180G39633 Striga asiatica HOM05D001944 ORTHO05D002405 1.0e-20 104.0 134 41.8
Gohir.A05G105000 Gossypium hirsutum HOM05D001944 ORTHO05D002405 1.3e-20 103.6 129 43.4
Hund01491 Selenicereus undatus HOM05D001944 ORTHO05D002405 6.6e-20 101.3 132 43.9
CsaV3_1G013920 Cucumis sativus L. HOM05D001944 ORTHO05D002405 1.5e-19 100.1 132 40.9
ClCG03G002980 Citrullus lanatus HOM05D001944 ORTHO05D002405 3.3e-19 99.0 116 45.7
MELO3C004905.2 Cucumis melo HOM05D001944 ORTHO05D002405 3.3e-19 99.0 132 42.4
COL.COLO4_18304 Corchorus olitorius HOM05D001944 ORTHO05D002405 4.3e-19 98.6 124 45.2
Hma1.2p1_0307F.1_g119930 Hydrangea macrophylla HOM05D001944 ORTHO05D002405 4.3e-19 98.6 94 53.2
Cpa.g.sc311.4 Carica papaya HOM05D001944 ORTHO05D002405 7.3e-19 97.8 125 41.6
Lalb_Chr24g0394751 Lupinus albus HOM05D001944 ORTHO05D002405 2.1e-18 96.3 135 38.5
Sed0024282 Sechium edule HOM05D001944 ORTHO05D002405 2.8e-18 95.9 113 44.2
Ah.01g003060 Amaranthus hybridus HOM05D001944 ORTHO05D002405 6.2e-18 94.7 114 50.0
Dinv01067 Davidia involucrata HOM05D001944 ORTHO05D002405 6.2e-18 94.7 127 44.9
AUR62029226 Chenopodium quinoa HOM05D001944 ORTHO05D002405 1.8e-17 93.2 119 45.4
Manes.03G122401 Manihot esculenta HOM05D001944 ORTHO05D002405 3.1e-17 92.4 125 37.6
DCAR_022760 Daucus carota HOM05D001944 ORTHO05D002405 9.0e-17 90.9 126 40.5
HanXRQChr01g0027901 Helianthus annuus HOM05D001944 ORTHO05D002405 9.0e-17 90.9 134 41.8
CANSAT54G1673 Cannabis sativa HOM05D001944 ORTHO05D002405 1.5e-16 90.1 127 44.1
CSS0012038 Camellia sinensis var. sinensis HOM05D001944 ORTHO05D002405 3.4e-16 89.0 68 64.7
SHI21814 Sapria himalayana HOM05D001944 ORTHO05D002405 1.3e-15 87.0 131 38.9
ECA238G1293 Erigeron canadensis HOM05D001944 ORTHO05D002405 6.4e-15 84.7 116 34.5
PSO170G5477 Papaver somniferum HOM05D000620 ORTHO05D000537 1.4e-14 83.6 88 47.7
SEGI_24058 Sequoiadendron giganteum HOM05D001944 ORTHO05D002405 1.4e-14 83.6 108 38.9
HanXRQChr01g0027871 Helianthus annuus HOM05D001944 ORTHO05D002405 1.9e-14 83.2 104 44.2
Lsat_1_v5_gn_1_53241 Lactuca sativa HOM05D001944 ORTHO05D002405 1.9e-14 83.2 87 47.1
Actinidia07154 Actinidia chinensis HOM05D001944 ORTHO05D002405 2.4e-14 82.8 104 49.0
HPP92_003458 Vanilla planifolia HOM05D001944 ORTHO05D002405 2.7e-13 79.3 106 38.7
HPP92_003461 Vanilla planifolia HOM05D001944 ORTHO05D002405 3.0e-12 75.9 97 40.2
Eucgr.B02518 Eucalyptus grandis HOM05D001944 ORTHO05D002405 2.5e-11 72.8 107 37.4
HanXRQChr13g0421861 Helianthus annuus HOM05D001944 ORTHO05D002405 1.6e-10 70.1 86 44.2
HanXRQChr14g0452741 Helianthus annuus HOM05D001944 ORTHO05D002405 3.7e-10 68.9 105 33.3
SEGI_11355 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 1.2e-08 63.9 126 31.0
ATR1136G106 Amborella trichopoda HOM05D000104 ORTHO05D003467 2.0e-08 63.2 119 30.3
CDE09G0540 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 2.2e-07 59.7 138 30.4
Os01g0881000 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D003467 3.8e-07 58.9 96 35.4
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 6.4e-07 58.2 110 33.6
VMungo0647G2573 Vigna mungo HOM05D000104 ORTHO05D003467 6.4e-07 58.2 142 31.7
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 8.4e-07 57.8 110 32.7
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 1.1e-06 57.4 101 32.7
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 1.1e-06 57.4 110 32.7
FAN20G0395 Fragaria x ananassa HOM05D000104 ORTHO05D003467 1.1e-06 57.4 110 32.7
Rhsim07G0163200 Rhododendron simsii HOM05D000104 ORTHO05D003467 1.1e-06 57.4 105 35.2
CDE06G2391 Ceratophyllum demersum HOM05D000104 ORTHO05D003467 1.4e-06 57.0 110 31.8
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 1.4e-06 57.0 105 35.2
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 1.4e-06 57.0 110 32.7
AagrBONN_evm.TU.Sc2ySwM_344.1528 Anthoceros agrestis HOM05D000104 ORTHO05D003467 1.9e-06 56.6 98 35.7
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 2.4e-06 56.2 102 34.3
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 2.4e-06 56.2 106 34.0
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 2.4e-06 56.2 106 34.0
ATR0721G152 Amborella trichopoda HOM05D000104 ORTHO05D004881 3.2e-06 55.8 138 28.3
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 3.2e-06 55.8 105 34.3
Thhalv10027006m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 3.2e-06 55.8 126 30.2
MD08G1058800 Malus domestica HOM05D000104 ORTHO05D003467 3.2e-06 55.8 102 34.3
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 3.2e-06 55.8 102 34.3
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 3.2e-06 55.8 105 33.3
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 4.2e-06 55.5 106 34.0
CDE08G1000 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 4.2e-06 55.5 138 29.0
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 4.2e-06 55.5 106 33.0
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 4.2e-06 55.5 106 33.0
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 4.2e-06 55.5 106 33.0
Phvul.001G046100 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 4.2e-06 55.5 139 30.2
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 5.5e-06 55.1 106 34.0
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 5.5e-06 55.1 136 30.9
Lalb_Chr22g0361401 Lupinus albus HOM05D000104 ORTHO05D003467 7.1e-06 54.7 139 28.8
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 7.1e-06 54.7 105 34.3
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 7.1e-06 54.7 105 33.3
Ca_13055_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 9.3e-06 54.3 105 32.4
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 9.3e-06 54.3 102 33.3
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 9.3e-06 54.3 110 31.8
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 9.3e-06 54.3 105 33.3
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 9.3e-06 54.3 105 33.3
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 9.3e-06 54.3 110 32.7
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 9.3e-06 54.3 105 34.3


User provided reference genes

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