Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 0.0e+00 1182.9 578 100.0
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 2.9e-265 918.3 525 87.4
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.4e-219 766.5 467 80.9
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 7.8e-218 760.8 524 72.9
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 1.9e-216 756.1 496 75.8
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 2.8e-215 752.3 470 78.7
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 6.2e-215 751.1 423 85.1
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 1.7e-212 743.0 439 80.0
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 1.7e-212 743.0 465 79.1
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 3.8e-212 741.9 489 76.3
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 3.8e-212 741.9 418 83.5
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 8.4e-212 740.7 471 77.3
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 8.4e-212 740.7 517 72.3
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 1.9e-211 739.6 490 75.7
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 5.4e-211 738.0 464 79.3
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 7.1e-211 737.6 488 75.8
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 9.3e-211 737.3 472 76.9
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 1.2e-210 736.9 506 74.7
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 3.5e-210 735.3 444 80.6
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 4.6e-210 734.9 442 80.1
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 6.0e-210 734.6 446 78.7
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.0e-209 733.8 518 71.6
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.0e-209 733.8 518 71.6
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 3.0e-209 732.3 483 74.1
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 3.0e-209 732.3 484 73.6
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 5.1e-209 731.5 463 78.4
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 8.7e-209 730.7 421 81.9
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 1.5e-208 729.9 449 79.3
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 2.5e-208 729.2 480 75.6
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 3.3e-208 728.8 448 78.3
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 5.6e-208 728.0 451 77.8
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 5.6e-208 728.0 504 73.2
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 7.3e-208 727.6 472 78.0
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 9.6e-208 727.2 429 80.4
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.6e-207 726.5 446 77.8
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 2.8e-207 725.7 414 81.2
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 1.4e-206 723.4 448 77.7
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 1.8e-206 723.0 518 71.0
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 6.9e-206 721.1 520 71.3
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 9.0e-206 720.7 483 72.9
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 9.0e-206 720.7 414 80.7
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 7.6e-205 717.6 485 74.6
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 9.9e-205 717.2 477 72.3
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 3.8e-204 715.3 444 78.2
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 4.9e-204 714.9 458 76.6
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 5.4e-203 711.4 509 70.3
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 7.1e-203 711.1 463 75.8
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 9.3e-203 710.7 480 73.8
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 1.3e-201 706.8 513 71.2
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 1.3e-201 706.8 513 71.2
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 1.8e-201 706.4 536 66.8
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 5.1e-201 704.9 461 74.4
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 5.1e-201 704.9 504 70.0
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 8.7e-201 704.1 498 73.1
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 1.1e-200 703.7 496 72.6
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 1.1e-200 703.7 491 73.1
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 3.3e-200 702.2 450 75.6
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 4.3e-200 701.8 405 82.5
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 4.3e-200 701.8 497 70.2
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 5.6e-200 701.4 494 70.6
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 9.6e-200 700.7 478 73.4
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 1.6e-199 699.9 498 70.7
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 1.1e-198 697.2 455 75.6
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 9.0e-198 694.1 457 74.4
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 1.2e-197 693.7 452 74.8
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 1.5e-197 693.3 477 72.3
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 2.6e-197 692.6 453 74.8
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 4.5e-197 691.8 440 76.4
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 9.9e-197 690.6 518 68.7
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 1.3e-196 690.3 498 69.1
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 1.7e-196 689.9 458 74.5
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 1.1e-195 687.2 426 76.5
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 7.1e-195 684.5 516 69.8
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 1.8e-193 679.9 408 79.2
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 6.7e-193 677.9 444 75.0
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.1e-192 677.2 375 84.3
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 1.9e-192 676.4 493 69.4
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 4.3e-192 675.2 462 71.2
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 1.3e-191 673.7 475 70.7
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.1e-191 672.9 454 73.6
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 6.2e-191 671.4 456 73.2
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 6.2e-191 671.4 456 73.2
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 1.1e-190 670.6 456 73.5
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 4.0e-190 668.7 456 73.7
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 9.0e-190 667.5 449 74.4
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 2.0e-189 666.4 487 69.8
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 2.3e-185 652.9 382 80.1
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 1.1e-184 650.6 399 75.9
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 9.6e-184 647.5 452 68.4
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 2.8e-183 646.0 481 68.4
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 4.5e-181 638.6 394 73.4
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 1.2e-178 630.6 490 65.9
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 6.9e-174 614.8 599 57.4
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 1.4e-171 607.1 455 66.2
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 3.6e-170 602.4 358 78.5
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 1.7e-167 593.6 405 72.3
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 9.1e-166 587.8 447 66.7
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 5.9e-165 585.1 487 62.4
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 7.0e-158 561.6 405 67.9
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 6.7e-153 545.0 477 59.5
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 3.7e-143 512.7 262 91.6
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 2.0e-141 506.9 272 87.9
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.9e-139 500.4 357 66.7
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 7.2e-139 498.4 455 56.7
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 1.0e-137 494.6 507 56.0
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 3.4e-136 489.6 431 57.8
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 1.7e-135 487.3 379 62.5
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 4.3e-131 472.6 453 54.1
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 1.6e-130 470.7 298 76.8
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 6.8e-129 465.3 281 80.8
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.7e-124 450.7 334 67.4
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 5.4e-118 429.1 291 71.5
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 4.6e-117 426.0 250 79.6
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.1e-113 414.8 235 85.1
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 3.1e-113 413.3 383 55.4
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 3.4e-112 409.8 436 49.8
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 4.4e-104 382.9 537 41.7
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 2.7e-101 373.6 415 48.7
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 4.4e-96 356.3 208 80.3
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 7.8e-93 345.5 427 47.3
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 1.3e-71 275.0 234 60.3
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 5.5e-70 269.6 238 61.3
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 1.3e-66 258.5 174 72.4
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 1.5e-56 224.9 232 56.5
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.0e-55 222.2 140 75.0
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 1.8e-52 211.5 288 43.8
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 1.1e-51 208.8 185 59.5
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 3.7e-50 203.8 308 38.3
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 3.8e-47 193.7 185 56.8
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 9.4e-46 189.1 115 75.7
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 4.7e-45 186.8 370 33.5
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 8.0e-45 186.0 270 37.0
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.8e-41 174.9 143 61.5
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 5.3e-41 173.3 299 37.5
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 9.1e-41 172.6 391 32.5
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 1.2e-37 162.2 403 30.3
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 1.4e-36 158.7 122 68.0
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.4e-33 148.7 74 82.4
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 5.2e-28 130.2 117 59.8
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 6.3e-26 123.2 113 59.3
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 3.1e-25 120.9 253 36.0
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 4.5e-24 117.1 95 64.2
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.4e-20 105.5 119 45.4
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 1.8e-17 95.1 78 69.2
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 4.1e-17 94.0 98 53.1
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 3.0e-12 77.8 98 48.0
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 2.9e-10 71.2 38 92.1
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 9.2e-09 66.2 146 30.1
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 6.0e-08 63.5 31 83.9
GSVIVG01001926001 Vitis vinifera HOM05D004447 ORTHO05D005973 3.9e-07 60.8 44 65.9
C01p11650 Brassica napus HOM05D026831 ORTHO05D011195 6.6e-07 60.1 101 37.6
vmacro12587 Vaccinium macrocarpon HOM05D004447 ORTHO05D005973 6.6e-07 60.1 29 89.7
C02p10780 Brassica napus HOM05D002268 ORTHO05D042165 8.6e-07 59.7 101 36.6
Dinv22185 Davidia involucrata HOM05D004447 ORTHO05D005973 8.6e-07 59.7 42 64.3
BolC2t12207H Brassica oleracea HOM05D002268 ORTHO05D042165 1.1e-06 59.3 119 35.3
Psat7g024280 Pisum sativum HOM05D004447 ORTHO05D005973 3.3e-06 57.8 28 85.7
Nn8g41218 Nelumbo nucifera HOM05D004447 ORTHO05D005973 5.6e-06 57.0 42 59.5
Rhsim01G0191400 Rhododendron simsii HOM05D004447 ORTHO05D005973 7.3e-06 56.6 27 92.6
Actinidia06336 Actinidia chinensis HOM05D004447 ORTHO05D005973 9.5e-06 56.2 27 88.9
Lj2C632T3 Lonicera japonica HOM05D004447 ORTHO05D005973 9.5e-06 56.2 29 82.8


User provided reference genes

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