Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 5.4e-83 310.8 146 100.0
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.1e-32 143.7 149 51.0
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 3.3e-32 142.1 153 47.1
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 5.7e-32 141.4 169 45.6
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 3.7e-31 138.7 175 46.3
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 3.1e-30 135.6 176 44.3
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 3.1e-30 135.6 175 44.6
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.2e-29 133.7 172 45.3
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.4e-29 132.1 174 43.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.3e-28 130.2 153 45.8
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.7e-28 129.8 177 42.4
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.7e-28 129.8 163 42.9
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.9e-28 129.0 173 43.4
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 5.0e-28 128.3 176 45.5
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 6.5e-28 127.9 174 43.7
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.5e-28 127.9 172 43.0
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 6.5e-28 127.9 173 42.2
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 8.5e-28 127.5 134 50.7
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.9e-27 126.3 155 41.3
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 3.2e-27 125.6 154 41.6
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 4.2e-27 125.2 149 44.3
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 4.2e-27 125.2 174 42.5
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.2e-27 124.4 166 42.8
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.2e-26 123.6 152 43.4
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.6e-26 123.2 166 42.8
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.6e-26 123.2 152 43.4
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.6e-26 123.2 169 42.6
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.7e-26 122.5 177 41.8
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 2.7e-26 122.5 176 40.3
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 2.7e-26 122.5 147 42.9
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 3.6e-26 122.1 175 42.3
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 3.6e-26 122.1 175 42.3
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 6.1e-26 121.3 153 41.8
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 6.1e-26 121.3 174 40.8
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 6.1e-26 121.3 174 40.8
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 7.9e-26 120.9 174 40.2
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.4e-25 120.2 175 42.3
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.4e-25 120.2 175 42.3
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.4e-25 120.2 173 40.5
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.8e-25 119.8 164 42.1
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 1.8e-25 119.8 153 42.5
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 2.3e-25 119.4 177 39.5
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 3.0e-25 119.0 164 41.5
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 3.0e-25 119.0 155 43.9
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 3.9e-25 118.6 151 42.4
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 3.9e-25 118.6 164 41.5
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 3.9e-25 118.6 175 40.6
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 5.1e-25 118.2 154 42.2
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 6.7e-25 117.9 140 42.1
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 6.7e-25 117.9 175 41.7
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 6.7e-25 117.9 154 41.6
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 6.7e-25 117.9 151 42.4
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 6.7e-25 117.9 155 42.6
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 8.8e-25 117.5 159 40.9
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 8.8e-25 117.5 168 40.5
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 8.8e-25 117.5 150 42.7
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.1e-24 117.1 174 39.7
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.1e-24 117.1 172 41.9
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.5e-24 116.7 154 43.5
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.5e-24 116.7 174 40.2
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.0e-24 116.3 183 38.3
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 2.0e-24 116.3 177 39.0
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.0e-24 116.3 164 41.5
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 2.0e-24 116.3 164 40.9
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 2.6e-24 115.9 175 40.0
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 3.3e-24 115.5 187 38.0
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 5.7e-24 114.8 164 39.0
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 7.4e-24 114.4 154 42.9
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.4e-24 114.4 160 41.9
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 7.4e-24 114.4 153 42.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 9.7e-24 114.0 153 42.5
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 2.2e-23 112.8 147 43.5
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 2.8e-23 112.5 148 40.5
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 2.8e-23 112.5 155 40.6
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 4.8e-23 111.7 183 37.7
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 6.3e-23 111.3 147 40.1
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 8.2e-23 110.9 152 40.8
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.1e-22 110.5 174 39.7
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.1e-22 110.5 184 37.0
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.8e-22 109.8 153 40.5
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.4e-22 109.4 175 37.1
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 2.4e-22 109.4 155 40.0
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.4e-22 109.4 152 40.1
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.1e-22 109.0 179 36.3
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 3.1e-22 109.0 155 39.4
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 4.1e-22 108.6 177 36.2
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 7.0e-22 107.8 153 39.9
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 7.0e-22 107.8 157 40.8
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 7.0e-22 107.8 179 35.8
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 9.1e-22 107.5 179 35.8
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.2e-21 107.1 153 39.9
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 1.2e-21 107.1 150 38.0
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-21 107.1 179 35.2
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.5e-21 106.7 141 41.8
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.0e-21 106.3 173 35.8
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 2.0e-21 106.3 153 40.5
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 2.0e-21 106.3 170 38.2
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 2.6e-21 105.9 151 40.4
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-21 105.9 171 37.4
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 4.5e-21 105.1 136 41.2
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.9e-21 104.8 183 36.6
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.3e-20 103.6 196 34.2
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 1.7e-20 103.2 143 38.5
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 3.8e-20 102.1 186 34.4
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.1e-19 100.5 151 36.4
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.1e-19 100.5 151 36.4
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.1e-19 100.5 169 37.3
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 2.5e-19 99.4 151 38.4
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 4.2e-19 98.6 182 33.0
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 7.2e-19 97.8 197 32.5
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 9.4e-19 97.4 177 33.3
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 3.6e-18 95.5 173 38.2
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.0e-17 94.0 125 42.4
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 4.4e-16 88.6 134 41.8
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 7.4e-16 87.8 155 35.5
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.8e-15 85.9 124 41.9
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 4.8e-15 85.1 149 36.2
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 5.3e-14 81.6 162 35.2
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 7.0e-14 81.3 157 32.5
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.2e-13 80.5 152 30.9
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.0e-13 79.7 69 56.5
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 5.9e-13 78.2 185 27.6
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 5.9e-13 78.2 153 30.7
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 2.9e-12 75.9 45 80.0
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 1.9e-11 73.2 101 38.6
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.5e-11 72.8 79 41.8
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.6e-10 68.9 89 41.6
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.6e-10 68.9 65 49.2
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 7.5e-08 61.2 57 50.9
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 4.8e-07 58.5 64 42.2
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 6.3e-07 58.2 83 36.1
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 5.3e-06 55.1 84 33.3
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 9.1e-06 54.3 72 45.8


User provided reference genes

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