Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18531 Vaccinium macrocarpon HOM05D006714 ORTHO05D008103 0.0e+00 1695.2 838 100.0
Rhsim08G0018800 Rhododendron simsii HOM05D006714 ORTHO05D008103 6.2e-224 781.6 815 56.7
Dinv28198 Davidia involucrata HOM05D006714 ORTHO05D008103 1.0e-178 631.3 816 47.1
Hma1.2p1_0158F.1_g070140 Hydrangea macrophylla HOM05D006714 ORTHO05D008103 2.9e-144 516.9 811 41.6
TAR629G3521 Trochodendron aralioides HOM05D006714 ORTHO05D008103 5.0e-141 506.1 918 38.5
RcHm_v2.0_Chr2g0123431 Rosa chinensis HOM05D006714 ORTHO05D008103 1.1e-140 505.0 780 41.3
GSVIVG01030704001 Vitis vinifera HOM05D006714 ORTHO05D008103 1.2e-139 501.5 771 41.9
MD15G1138100 Malus domestica HOM05D006714 ORTHO05D008103 5.4e-135 486.1 785 41.5
Haze_14269 Corylus avellana HOM05D006714 ORTHO05D008103 2.7e-134 483.8 788 40.7
Cc07_g13380 Coffea canephora HOM05D006714 ORTHO05D008103 3.5e-134 483.4 441 59.0
Cfa007804 Carpinus fangiana HOM05D006714 ORTHO05D008103 4.6e-134 483.0 782 40.4
FvH4_1g25400 Fragaria vesca HOM05D006714 ORTHO05D008103 7.3e-132 475.7 789 40.7
Dinv19038 Davidia involucrata HOM05D006714 ORTHO05D008103 1.2e-131 474.9 654 46.0
QL10p014398 Quercus lobata HOM05D006714 ORTHO05D008103 1.6e-131 474.6 884 39.5
Ciclev10011142m.g Citrus clementina HOM05D006714 ORTHO05D008103 2.3e-130 470.7 756 40.7
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.1e-127 461.8 775 40.1
Nitab4.5_0000201g0160 Nicotiana tabacum HOM05D006714 ORTHO05D008103 1.1e-127 461.8 441 56.0
FAN26G1526 Fragaria x ananassa HOM05D006714 ORTHO05D008103 1.4e-127 461.5 465 54.2
QL02p058308 Quercus lobata HOM05D006714 ORTHO05D008103 1.4e-127 461.5 935 37.9
CiPaw.03G072500 Carya illinoinensis HOM05D006714 ORTHO05D008103 1.9e-127 461.1 475 52.6
FAN23G2031 Fragaria x ananassa HOM05D006714 ORTHO05D008103 3.2e-127 460.3 465 54.2
Duzib211G0559 Durio zibethinus HOM05D006714 ORTHO05D008103 7.1e-127 459.1 481 51.6
Nn4g24295 Nelumbo nucifera HOM05D006714 ORTHO05D008103 1.6e-123 448.0 797 38.8
SalBow5G2523 Salvia bowleyana HOM05D006714 ORTHO05D008103 1.4e-122 444.9 459 53.2
Migut.K00904 Erythranthe guttata HOM05D006714 ORTHO05D008103 1.8e-122 444.5 493 51.9
Potri.017G130400 Populus trichocarpa HOM05D006714 ORTHO05D008103 6.8e-122 442.6 457 51.0
Manes.02G077300 Manihot esculenta HOM05D006714 ORTHO05D008103 3.4e-121 440.3 456 52.2
TWI77G0889 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 3.4e-121 440.3 801 38.0
DCAR_014171 Daucus carota HOM05D006714 ORTHO05D008103 8.4e-120 435.6 542 48.9
Thecc.04G114100 Theobroma cacao HOM05D006714 ORTHO05D008103 1.9e-119 434.5 480 50.0
HanXRQChr15g0483231 Helianthus annuus HOM05D006714 ORTHO05D008103 3.2e-119 433.7 527 49.5
Oeu032319.1 Olea europaea HOM05D006714 ORTHO05D008103 4.1e-119 433.3 389 60.4
TWI74G0031 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 5.4e-119 433.0 502 48.6
ECA247G1081 Erigeron canadensis HOM05D006714 ORTHO05D008103 3.9e-117 426.8 439 54.2
Sabra17G0108600 Salix brachista HOM05D006714 ORTHO05D008103 6.6e-117 426.0 442 50.9
arahy.Tifrunner.gnm1.ann1.ZV72ZC Arachis hypogaea HOM05D006714 ORTHO05D008103 1.2e-115 421.8 437 52.4
Gohir.A07G178400 Gossypium hirsutum HOM05D006714 ORTHO05D008103 1.6e-115 421.4 493 49.1
Gohir.D07G184700 Gossypium hirsutum HOM05D006714 ORTHO05D008103 2.1e-115 421.0 732 39.3
EL10Ac2g03178 Beta vulgaris HOM05D006714 ORTHO05D008103 6.2e-115 419.5 454 51.1
PSO017G5883 Papaver somniferum HOM05D006714 ORTHO05D008103 6.2e-115 419.5 464 49.8
CANSAT78G1609 Cannabis sativa HOM05D006714 ORTHO05D008103 1.1e-114 418.7 439 52.8
Gorai.001G205100 Gossypium raimondii HOM05D006714 ORTHO05D008103 1.1e-114 418.7 732 39.1
Aqoxy1G00382 Aquilegia oxysepala HOM05D006714 ORTHO05D008103 2.4e-114 417.5 427 53.4
arahy.Tifrunner.gnm1.ann1.E1Z4YV Arachis hypogaea HOM05D006714 ORTHO05D008103 4.0e-114 416.8 743 38.8
Hund13103 Selenicereus undatus HOM05D006714 ORTHO05D008103 4.4e-113 413.3 518 46.3
CAN.G222.36 Capsicum annuum HOM05D006714 ORTHO05D008103 2.2e-112 411.0 442 52.3
Nitab4.5_0006893g0050 Nicotiana tabacum HOM05D006714 ORTHO05D008103 1.4e-111 408.3 456 50.2
VMungo0647G1195 Vigna mungo HOM05D006714 ORTHO05D008103 1.6e-110 404.8 431 51.3
LjContig00141g0000721 Lotus japonicus HOM05D006714 ORTHO05D008103 4.6e-110 403.3 453 49.7
SGA_v2.0_scaffold45G17176 Striga asiatica HOM05D006714 ORTHO05D008103 4.6e-110 403.3 444 52.3
CsaV3_5G024210 Cucumis sativus L. HOM05D006714 ORTHO05D008103 7.8e-110 402.5 479 48.0
Ca_05830_v3 Cicer arietinum L. HOM05D006714 ORTHO05D008103 1.7e-109 401.4 451 49.7
Medtr5g078170 Medicago truncatula HOM05D006714 ORTHO05D008103 1.7e-109 401.4 516 45.9
Solyc11g011060.3 Solanum lycopersicum HOM05D006714 ORTHO05D008103 2.3e-109 401.0 442 50.5
Sopen11g005830 Solanum pennellii HOM05D006714 ORTHO05D008103 5.1e-109 399.8 442 50.2
Lsat_1_v5_gn_3_63641 Lactuca sativa HOM05D006714 ORTHO05D008103 9.6e-108 395.6 441 51.5
Sed0011157 Sechium edule HOM05D006714 ORTHO05D008103 4.8e-107 393.3 437 50.1
PGR031G2162 Punica granatum HOM05D006714 ORTHO05D008103 1.1e-106 392.1 589 42.4
Cpa.g.sc116.59 Carica papaya HOM05D006714 ORTHO05D008103 5.8e-105 386.3 430 49.8
AUR62037796 Chenopodium quinoa HOM05D006714 ORTHO05D008103 1.1e-103 382.1 389 51.9
Prupe.4G281200 Prunus persica HOM05D006714 ORTHO05D008103 2.7e-102 377.5 630 42.1
ClCG01G008770 Citrullus lanatus HOM05D006714 ORTHO05D008103 4.6e-102 376.7 556 42.8
AUR62018218 Chenopodium quinoa HOM05D006714 ORTHO05D008103 1.3e-101 375.2 447 48.1
Lalb_Chr04g0251401 Lupinus albus HOM05D006714 ORTHO05D008103 8.7e-101 372.5 432 49.8
THA.LOC104820908 Tarenaya hassleriana HOM05D006714 ORTHO05D008103 1.1e-98 365.5 396 51.3
TPR.G8266 Trifolium pratense HOM05D006714 ORTHO05D008103 2.4e-98 364.4 827 33.3
Thhalv10012945m.g Eutrema salsugineum HOM05D006714 ORTHO05D008103 3.4e-97 360.5 458 47.8
Carub.0006s1481 Capsella rubella HOM05D006714 ORTHO05D008103 4.5e-97 360.1 453 47.2
Aa31LG11G13040 Aethionema arabicum HOM05D006714 ORTHO05D008103 3.2e-95 354.0 436 47.2
CARHR196610 Cardamine hirsuta HOM05D006714 ORTHO05D008103 1.8e-93 348.2 457 46.4
Sp6g27560 Schrenkiella parvula HOM05D006714 ORTHO05D008103 1.8e-93 348.2 389 50.4
AL6G27570 Arabidopsis lyrata HOM05D006714 ORTHO05D008103 3.7e-91 340.5 425 46.8
AT5G16610 Arabidopsis thaliana HOM05D006714 ORTHO05D008103 6.2e-91 339.7 442 45.9
SalBow5G2948 Salvia bowleyana HOM05D006714 ORTHO05D008103 3.1e-90 337.4 448 45.8
HPP92_011112 Vanilla planifolia HOM05D006714 ORTHO05D008103 4.0e-90 337.0 393 47.8
Actinidia35727 Actinidia chinensis HOM05D006714 ORTHO05D008103 2.2e-88 331.3 806 33.3
HPP92_011097 Vanilla planifolia HOM05D006714 ORTHO05D008103 2.9e-88 330.9 393 47.3
ATR0171G009 Amborella trichopoda HOM05D006714 ORTHO05D008103 3.8e-88 330.5 473 42.5
A10p22600 Brassica napus HOM05D006714 ORTHO05D008103 4.9e-88 330.1 356 52.0
BraA10t44322Z Brassica rapa HOM05D006714 ORTHO05D008103 1.4e-87 328.6 500 41.8
C09p60510 Brassica napus HOM05D006714 ORTHO05D008103 1.6e-86 325.1 332 53.3
BolC9t58884H Brassica oleracea HOM05D006714 ORTHO05D008103 1.6e-86 325.1 332 53.3
PSO478G0421 Papaver somniferum HOM05D006714 ORTHO05D008103 3.9e-85 320.5 307 55.4
Glyma.14G214400 Glycine max HOM05D006714 ORTHO05D008103 1.1e-84 318.9 311 55.9
Sc11g0004560 Simmondsia chinensis HOM05D006714 ORTHO05D008103 1.1e-84 318.9 407 48.4
BcaB08g36834 Brassica carinata HOM05D006714 ORTHO05D008103 3.7e-83 313.9 357 49.9
Actinidia28805 Actinidia chinensis HOM05D006714 ORTHO05D008103 1.1e-82 312.4 651 36.7
Os03g0221300 Oryza sativa ssp. japonica HOM05D006714 ORTHO05D008103 9.0e-82 309.3 355 49.0
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.4e-79 302.0 387 44.4
Peaxi162Scf00305g00412 Petunia axillaris HOM05D006714 ORTHO05D008103 2.1e-78 298.1 251 60.2
Atru.chr1.1942 Acer truncatum HOM05D006714 ORTHO05D008103 2.3e-77 294.7 274 54.4
unitig_748.g8636 Utricularia gibba HOM05D006714 ORTHO05D008103 4.8e-75 287.0 376 45.2
PSO063G0106 Papaver somniferum HOM05D006714 ORTHO05D008103 1.4e-74 285.4 299 51.5
CDE07G1834 Ceratophyllum demersum HOM05D006714 ORTHO05D008103 3.4e-73 280.8 410 39.8
CSS0036373 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 5.0e-72 276.9 306 52.0
CSS0024067 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 2.4e-66 258.1 296 50.7
Pp3c23_20330 Physcomitrium patens HOM05D006714 ORTHO05D008103 4.8e-59 233.8 491 34.6
Psat2g047840 Pisum sativum HOM05D006714 ORTHO05D008103 9.1e-58 229.6 246 50.0
Pp3c24_16350 Physcomitrium patens HOM05D006714 ORTHO05D008103 4.5e-57 227.3 408 37.0
SEGI_28129 Sequoiadendron giganteum HOM05D006714 ORTHO05D008103 1.5e-55 222.2 300 46.0
QL93p0100_0731 Quercus lobata HOM05D006714 ORTHO05D008103 6.3e-51 206.8 116 81.0
Eucgr.F02863 Eucalyptus grandis HOM05D006714 ORTHO05D008103 5.3e-50 203.8 120 79.2
Phvul.008G236600 Phaseolus vulgaris HOM05D006714 ORTHO05D008103 2.2e-48 198.4 226 50.4
CBR_g12792 Chara braunii HOM05D006714 ORTHO05D008103 8.5e-48 196.4 316 36.7
SMO340G0205 Selaginella moellendorffii HOM05D006714 ORTHO05D008103 3.0e-45 188.0 255 40.8
Peaxi162Scf00305g00413 Petunia axillaris HOM05D006714 ORTHO05D008103 6.1e-38 163.7 214 49.5
MELO3C022869.2 Cucumis melo HOM05D006714 ORTHO05D008103 1.4e-37 162.5 555 28.6
QL93p0100_0723 Quercus lobata HOM05D006714 ORTHO05D008103 2.8e-35 154.8 245 43.3
CSS0018819 Camellia sinensis var. sinensis HOM05D060064 ORTHO05D043302 2.9e-19 101.7 128 50.0
CSS0029132 Camellia sinensis var. sinensis HOM05D060064 ORTHO05D043302 2.9e-19 101.7 128 50.0
vmacro06797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000022 7.5e-12 77.0 99 44.4
QL93p0100_0715 Quercus lobata HOM05D006714 ORTHO05D008103 3.0e-08 65.1 130 40.0
vmacro01816 Vaccinium macrocarpon HOM05D000489 ORTHO05D000372 1.5e-07 62.8 67 52.2
Eucgr.F02862 Eucalyptus grandis HOM05D006714 ORTHO05D008103 5.6e-07 60.8 119 31.9
Atru.chr1.1941 Acer truncatum HOM05D006714 ORTHO05D008103 7.3e-07 60.5 141 32.6
vmacro16872 Vaccinium macrocarpon HOM05D000003 ORTHO05D000022 1.2e-06 59.7 56 51.8
Oeu032321.1 Olea europaea HOM05D006714 ORTHO05D008103 2.8e-06 58.5 122 35.2
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 3.6e-06 58.2 48 58.3


User provided reference genes

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