Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 0.0e+00 1719.9 919 100.0
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 0.0e+00 1482.6 920 87.8
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1201.4 938 71.4
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1130.9 931 68.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 0.0e+00 1125.2 931 68.4
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 7.9e-305 1050.4 896 65.6
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.5e-300 1034.6 922 67.4
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.1e-273 946.0 949 59.4
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.6e-265 918.7 956 59.8
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 7.9e-265 917.5 947 59.7
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 3.5e-260 902.1 934 56.4
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 4.5e-260 901.7 939 56.3
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.2e-259 899.4 940 57.6
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 8.5e-259 897.5 1011 54.6
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.2e-258 895.6 952 58.7
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.3e-256 889.4 954 57.2
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.0e-256 889.0 948 56.9
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.1e-253 880.6 939 57.6
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 3.1e-253 879.0 948 56.3
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.7e-251 873.2 945 55.7
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.3e-248 862.8 783 64.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.8e-248 860.9 952 55.9
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 2.0e-247 859.8 950 55.2
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.3e-246 857.1 951 57.0
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-246 857.1 952 55.7
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.3e-246 854.4 951 55.5
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.8e-245 853.2 1003 52.1
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.1e-241 839.7 950 55.6
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 4.7e-241 838.6 950 55.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 6.1e-241 838.2 945 53.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-239 833.9 929 56.4
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-237 827.0 948 55.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-237 827.0 939 55.3
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 4.5e-236 822.0 974 55.3
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.3e-235 820.5 940 55.3
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 3.8e-235 818.9 947 53.3
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 3.8e-235 818.9 949 53.7
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 3.3e-234 815.8 947 52.3
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 5.6e-234 815.1 961 51.7
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 3.6e-233 812.4 943 55.6
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.1e-233 811.6 957 53.2
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.2e-231 807.4 959 53.0
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 7.5e-231 804.7 912 54.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-230 802.7 902 53.5
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.9e-230 802.7 975 52.0
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 4.9e-230 802.0 641 70.2
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 6.4e-230 801.6 981 52.7
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 5.4e-229 798.5 945 52.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.9e-228 795.0 852 54.9
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 6.6e-227 791.6 953 52.6
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.1e-226 790.8 851 54.8
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-226 790.4 953 52.5
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 5.8e-223 778.5 922 53.8
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 5.8e-223 778.5 951 49.7
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 9.8e-223 777.7 945 50.2
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 6.0e-220 768.5 953 49.9
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 7.3e-218 761.5 925 50.5
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.8e-217 759.6 941 53.7
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 8.9e-216 754.6 942 50.7
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 3.4e-215 752.7 915 53.9
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.7e-214 749.2 889 52.3
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 5.4e-213 745.3 923 50.8
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 6.0e-212 741.9 896 50.8
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 3.6e-209 732.6 943 48.9
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.1e-208 731.1 946 51.5
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.5e-207 727.2 928 51.6
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 7.6e-207 724.9 881 52.8
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.3e-206 724.2 967 48.8
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 4.1e-205 719.2 877 51.2
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 5.4e-205 718.8 1013 46.9
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 9.2e-205 718.0 916 50.3
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.7e-204 716.5 954 48.1
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.0e-203 714.5 916 49.6
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.3e-203 714.1 910 51.4
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.3e-203 714.1 906 50.4
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 6.6e-203 711.8 946 48.1
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-202 711.1 912 50.1
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 7.3e-202 708.4 853 50.4
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 4.7e-201 705.7 891 49.9
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 8.1e-201 704.9 933 50.4
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.4e-200 704.1 932 49.4
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 4.0e-200 702.6 958 48.0
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.4e-199 699.5 853 50.3
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.6e-196 690.6 923 48.6
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.5e-194 683.3 873 49.5
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 4.8e-193 679.1 962 48.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 6.2e-193 678.7 921 49.1
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.6e-191 673.3 942 47.7
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.8e-190 669.5 941 47.9
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 7.1e-189 665.2 951 46.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 5.1e-187 659.1 931 47.3
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 3.3e-186 656.4 903 47.0
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 5.6e-186 655.6 944 47.9
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-183 647.9 917 47.1
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.3e-182 644.4 890 47.6
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 4.3e-178 629.4 609 59.8
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 9.6e-178 628.2 920 47.1
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.8e-177 626.7 891 47.0
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.7e-177 626.3 885 46.3
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.0e-176 622.9 665 54.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 6.9e-176 622.1 918 46.8
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.6e-175 620.2 693 55.7
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-175 620.2 922 47.8
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.2e-172 611.3 856 49.2
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.8e-169 600.1 942 43.9
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.4e-168 597.8 853 47.4
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 4.1e-168 596.3 854 47.2
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 5.3e-168 595.9 936 43.6
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 8.5e-166 588.6 934 42.7
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 9.3e-165 585.1 881 44.6
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.0e-163 581.6 937 42.4
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 4.3e-162 576.2 916 45.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.3e-162 576.2 932 44.1
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 4.8e-161 572.8 854 44.8
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 4.8e-161 572.8 877 44.4
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.8e-155 552.0 934 43.9
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 9.7e-154 548.5 897 45.3
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 8.2e-153 545.4 933 43.0
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-152 544.7 933 42.4
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.9e-152 542.3 668 50.3
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 9.1e-152 542.0 941 43.3
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.3e-150 538.1 942 43.3
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.7e-150 537.7 932 41.7
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.7e-150 537.7 932 41.7
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.9e-150 537.0 939 42.6
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 6.5e-150 535.8 936 42.9
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 4.2e-149 533.1 936 42.8
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-147 528.1 936 42.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.9e-147 526.6 940 41.5
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.0e-139 500.4 925 41.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.5e-138 498.0 685 49.3
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 2.0e-138 497.7 921 42.1
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 6.3e-137 492.7 917 41.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 5.5e-133 479.6 823 40.7
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.4e-128 464.9 857 41.0
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.7e-127 460.7 505 56.2
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.5e-125 454.1 883 37.9
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.7e-121 441.4 952 38.3
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 6.3e-121 439.5 858 42.4
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.4e-120 438.3 631 48.7
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.7e-118 431.4 474 54.4
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 3.0e-115 420.6 887 37.7
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.5e-111 407.1 855 39.3
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 6.0e-103 379.8 624 43.6
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-100 372.1 334 65.6
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.7e-95 354.4 438 52.5
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.7e-94 351.7 536 44.8
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 6.8e-91 339.7 1024 35.7
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 6.0e-87 326.6 940 33.0
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.0e-78 299.3 820 33.3
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 3.3e-77 294.3 441 49.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.1e-75 287.7 924 32.6
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.2e-73 281.6 371 48.5
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-73 281.2 916 33.4
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 6.9e-67 260.0 291 52.9
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.8e-66 256.9 939 29.1
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.1e-61 242.7 752 34.8
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.6e-60 238.8 354 45.8
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 4.0e-59 234.2 412 47.1
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 4.5e-50 204.1 271 45.8
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 3.3e-45 188.0 228 50.0
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.1e-43 181.4 282 40.4
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.6e-42 178.3 544 34.0
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.5e-40 171.8 343 33.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.2e-40 171.4 194 50.0
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 4.2e-40 171.0 348 41.4
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 6.7e-38 163.7 157 55.4
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-33 148.3 266 45.9
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 2.8e-28 131.7 176 46.6
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.8e-27 129.0 117 58.1
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 4.1e-27 127.9 103 62.1
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 9.1e-27 126.7 111 57.7
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-22 112.8 101 68.3
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.5e-18 97.8 118 46.6
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 2.9e-17 95.1 85 50.6
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 9.4e-16 90.1 165 40.6
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.4e-14 86.3 164 35.4
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.2e-14 84.3 88 50.0
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.0e-13 82.4 125 44.0
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.8e-12 78.6 48 70.8
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 5.5e-08 64.3 74 39.2


User provided reference genes

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