Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 4.9e-207 724.2 348 100.0
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 5.1e-164 581.3 425 69.4
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 6.9e-161 570.9 426 67.8
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.6e-160 568.9 426 68.1
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.8e-159 565.1 430 67.2
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.1e-158 563.5 426 68.1
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 4.2e-158 561.6 424 67.7
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 3.0e-156 555.4 426 66.0
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.1e-153 547.0 426 65.7
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.1e-153 547.0 420 66.2
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 1.8e-153 546.2 426 65.5
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 6.9e-153 544.3 424 65.6
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 6.9e-153 544.3 412 66.0
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 2.6e-152 542.3 427 65.6
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 3.4e-152 542.0 427 65.8
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 4.5e-152 541.6 427 65.6
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 5.9e-152 541.2 426 65.7
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.0e-151 540.4 426 64.6
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 8.5e-151 537.3 425 63.8
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 8.5e-151 537.3 425 64.0
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.4e-150 536.6 422 65.2
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 3.2e-150 535.4 426 64.1
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 7.2e-150 534.3 425 64.0
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 9.4e-150 533.9 434 64.3
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.2e-149 533.5 425 62.8
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 1.2e-149 533.5 427 63.7
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 2.1e-149 532.7 425 63.5
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 2.3e-148 529.3 425 64.2
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 2.3e-148 529.3 427 63.2
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 3.9e-148 528.5 425 63.1
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 6.7e-148 527.7 425 63.1
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 2.0e-147 526.2 446 61.4
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 3.1e-145 518.8 425 61.9
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.0e-144 516.2 346 75.7
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 7.7e-144 514.2 424 60.8
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 1.3e-143 513.5 427 62.3
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 3.8e-143 511.9 428 61.4
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 6.5e-143 511.1 477 57.4
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.1e-142 510.4 426 61.3
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 5.5e-142 508.1 367 70.3
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.2e-141 506.9 425 60.9
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 3.6e-141 505.4 440 58.6
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.8e-140 503.1 423 59.3
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 3.0e-140 502.3 424 61.1
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.1e-139 500.4 448 58.7
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 1.1e-139 500.4 439 61.0
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 2.0e-139 499.6 426 59.6
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 3.3e-139 498.8 427 60.7
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 4.4e-139 498.4 421 60.6
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.7e-138 496.5 441 57.8
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.2e-138 496.1 441 57.8
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.2e-138 496.1 441 57.8
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 3.7e-138 495.4 394 64.7
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 3.1e-137 492.3 420 59.3
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 3.5e-136 488.8 428 59.1
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 7.7e-136 487.6 417 60.0
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 7.7e-136 487.6 392 63.5
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.9e-135 485.7 425 57.6
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 3.8e-135 485.3 425 57.6
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 4.2e-134 481.9 388 64.9
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 5.5e-134 481.5 425 57.2
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 3.6e-133 478.8 427 57.4
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 3.6e-133 478.8 427 57.4
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 3.6e-133 478.8 427 57.4
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 3.6e-133 478.8 424 56.1
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 6.1e-133 478.0 428 57.9
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 1.8e-132 476.5 428 59.3
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.3e-132 476.1 423 56.7
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 4.0e-132 475.3 426 57.7
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 5.2e-132 474.9 424 57.5
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 6.7e-132 474.6 428 57.5
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.5e-131 473.4 425 56.2
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 1.5e-131 473.4 395 60.5
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 3.7e-130 468.8 422 57.3
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 4.1e-129 465.3 390 60.8
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 9.1e-129 464.2 395 60.3
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 3.5e-128 462.2 426 57.5
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 5.0e-127 458.4 443 53.5
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 8.5e-127 457.6 430 54.4
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 4.2e-126 455.3 473 51.6
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 4.7e-125 451.8 431 55.9
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.4e-124 450.3 422 56.4
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 2.3e-124 449.5 426 55.4
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.2e-124 448.4 449 55.9
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 6.8e-124 448.0 426 54.9
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 5.7e-123 444.9 394 58.4
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.3e-122 443.7 431 55.0
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.4e-121 440.3 425 54.4
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 2.4e-121 439.5 398 57.0
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.2e-117 427.2 496 49.0
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 4.7e-117 425.2 394 54.8
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 4.0e-116 422.2 370 61.1
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 2.8e-114 416.0 341 62.8
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.9e-114 415.2 399 58.1
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 7.7e-112 407.9 425 48.7
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 2.3e-111 406.4 395 51.9
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 2.9e-111 406.0 381 55.9
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 4.9e-106 388.7 344 59.0
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.0e-103 380.9 359 56.8
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 8.0e-101 371.3 381 54.1
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 7.5e-99 364.8 403 50.1
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 7.5e-99 364.8 425 48.5
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 2.5e-94 349.7 401 49.6
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.6e-93 347.1 356 51.4
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 6.2e-93 345.1 407 48.4
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 2.8e-85 319.7 206 72.8
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 4.9e-82 308.9 299 55.9
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 4.9e-82 308.9 420 41.4
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 1.4e-81 307.4 205 70.7
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.4e-81 307.4 299 55.5
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 6.6e-79 298.5 638 33.4
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 4.3e-78 295.8 299 52.5
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 2.0e-75 287.0 607 33.8
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.0e-75 287.0 419 40.6
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 4.4e-75 285.8 433 39.3
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 2.6e-67 260.0 426 36.4
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 9.3e-57 224.9 268 45.9
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.3e-55 221.1 142 70.4
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 9.3e-49 198.4 162 64.8
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.5e-46 191.0 122 71.3
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 5.9e-43 179.1 107 74.8
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 5.9e-43 179.1 283 40.3
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 1.9e-41 174.1 119 66.4
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.8e-37 160.2 144 52.1
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 2.0e-35 154.1 177 50.3
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 1.4e-31 141.4 452 27.2
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.2e-29 134.0 286 35.3
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 1.8e-23 114.4 85 60.0
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 3.5e-19 100.1 68 75.0
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 2.1e-16 90.9 66 63.6
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 1.8e-15 87.8 51 78.4
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 5.2e-15 86.3 51 78.4
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 5.7e-14 82.8 61 60.7
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 8.2e-13 79.0 92 45.7
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 9.4e-09 65.5 44 65.9
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 5.2e-07 59.7 56 48.2
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 8.8e-07 58.9 216 27.8
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 7.5e-06 55.8 42 52.4


User provided reference genes

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