Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001104', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '555', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p10280' => 'bna', 'A02p35680' => 'bna', 'A04p12530' => 'bna', 'A06p40770' => 'bna', 'A06p40780' => 'bna', 'A06p40790' => 'bna', 'A07p28190' => 'bna', 'Aa31LG2G4840' => 'aar', 'Aa31LG6G1070' => 'aar', 'Aa31LG9G16340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.423' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.221' => 'aag', 'Actinidia06020' => 'ach', 'Actinidia06087' => 'ach', 'Actinidia16934' => 'ach', 'Actinidia33715' => 'ach', 'Actinidia35743' => 'ach', 'Actinidia35744' => 'ach', 'Actinidia36089' => 'ach', 'Ah.06g187130' => 'amhyb', 'Ah.07g199000' => 'amhyb', 'Ah.14g086390' => 'amhyb', 'AL1G21640' => 'aly', 'AL5G17420' => 'aly', 'AL5G17430' => 'aly', 'AL7G36010' => 'aly', 'AL7G50410' => 'aly', 'Aqoxy3G00645' => 'aox', 'Aqoxy3G01030' => 'aox', 'Aqoxy3G01031' => 'aox', 'Aqoxy3G02957' => 'aox', 'Aqoxy4G00068' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E40C5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VZU0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M213TK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2U024' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA6DSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHR6Q8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLD0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5BZSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE11WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNKJ1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5509F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZA2NY6' => 'arhy', 'AT3G27925' => 'ath', 'AT3G27930' => 'ath', 'AT4G18370' => 'ath', 'AT5G39830' => 'ath', 'ATR0564G198' => 'atr', 'ATR0730G028' => 'atr', 'ATR0730G148' => 'atr', 'ATR1098G116' => 'atr', 'Atru.chr10.1174' => 'acertr', 'Atru.chr6.2305' => 'acertr', 'Atru.chr6.2306' => 'acertr', 'Atru.chr8.144' => 'acertr', 'AUR62002715' => 'cqu', 'AUR62029365' => 'cqu', 'AUR62030175' => 'cqu', 'AUR62034399' => 'cqu', 'AUR62034754' => 'cqu', 'AUR62039816' => 'cqu', 'AUR62043056' => 'cqu', 'AUR62043218' => 'cqu', 'BcaB06g27379' => 'bca', 'BcaB07g30139' => 'bca', 'BcaC01g03604' => 'bca', 'BcaC02g08313' => 'bca', 'BcaC03g17495' => 'bca', 'BcaC04g21585' => 'bca', 'BcaC06g30950' => 'bca', 'BcaC06g30951' => 'bca', 'BcaC06g33770' => 'bca', 'BcaC06g33771' => 'bca', 'BcaC07g41832' => 'bca', 'BcaC09g51528' => 'bca', 'BcaNung00010' => 'bca', 'BolC1t01199H' => 'bol', 'BolC2t11515H' => 'bol', 'BolC2t11520H' => 'bol', 'BolC4t26211H' => 'bol', 'BolC4t27122H' => 'bol', 'BolC7t44223H' => 'bol', 'BolC7t44224H' => 'bol', 'BraA01t00975Z' => 'bra', 'BraA02t08570Z' => 'bra', 'BraA02t08571Z' => 'bra', 'BraA04t16914Z' => 'bra', 'BraA06t26998Z' => 'bra', 'BraA06t26999Z' => 'bra', 'C01p12230' => 'bna', 'C02p45330' => 'bna', 'C02p54520' => 'bna', 'C02p54570' => 'bna', 'C04p46270' => 'bna', 'C07p37120' => 'bna', 'C07p37130' => 'bna', 'C08p49060' => 'bna', 'CAN.G1145.1' => 'can', 'CAN.G1275.4' => 'can', 'CAN.G206.27' => 'can', 'CAN.G685.22' => 'can', 'CAN.G973.9' => 'can', 'CANSAT35G0592' => 'cansat', 'CANSAT64G0855' => 'cansat', 'CANSAT64G1134' => 'cansat', 'CANSAT64G2394' => 'cansat', 'CANSAT64G2658' => 'cansat', 'CARHR149490' => 'chi', 'CARHR149500' => 'chi', 'CARHR225140' => 'chi', 'CARHR262400' => 'chi', 'Carub.0005s0649' => 'cru', 'Carub.0005s0650' => 'cru', 'Carub.0007s2292' => 'cru', 'Carub.0007s3590' => 'cru', 'Ca_00531_v3' => 'car', 'Ca_04192_v3' => 'car', 'Ca_04279_v3' => 'car', 'Ca_26507_v3' => 'car', 'Ca_29015_v3' => 'car', 'CBR_g12057' => 'cbr', 'CBR_g19701' => 'cbr', 'CBR_g37528' => 'cbr', 'CBR_g50353' => 'cbr', 'CBR_g8333' => 'cbr', 'Cc07_g02170' => 'ccan', 'Cc07_g02180' => 'ccan', 'Cc07_g03310' => 'ccan', 'Cc11_g03520' => 'ccan', 'CDE02G2406' => 'cde', 'CDE02G4088' => 'cde', 'CDE04G3157' => 'cde', 'CDE05G3320' => 'cde', 'CDE06G1047' => 'cde', 'CDE06G1079' => 'cde', 'CDE06G1183' => 'cde', 'CDE06G2339' => 'cde', 'CDE06G2743' => 'cde', 'Cfa007422' => 'cfa', 'Cfa007542' => 'cfa', 'Cfa008566' => 'cfa', 'Cfa008567' => 'cfa', 'Ciclev10012082m.g' => 'ccl', 'Ciclev10015214m.g' => 'ccl', 'Ciclev10015353m.g' => 'ccl', 'Ciclev10016002m.g' => 'ccl', 'Ciclev10020491m.g' => 'ccl', 'CiPaw.03G027600' => 'cil', 'CiPaw.03G038600' => 'cil', 'CiPaw.03G038700' => 'cil', 'CiPaw.04G025200' => 'cil', 'CiPaw.10G090500' => 'cil', 'ClCG03G006710' => 'cla', 'ClCG09G018300' => 'cla', 'ClCG09G018970' => 'cla', 'ClCG09G018980' => 'cla', 'COL.COLO4_26643' => 'col', 'COL.COLO4_28978' => 'col', 'COL.COLO4_28980' => 'col', 'Cpa.g.sc14.5' => 'cpa', 'Cpa.g.sc17.5' => 'cpa', 'Cpa.g.sc215.8' => 'cpa', 'Cpa.g.sc215.9' => 'cpa', 'Cre01.g028350' => 'cre', 'Cre02.g088400' => 'cre', 'Cre02.g110600' => 'cre', 'Cre08.g358552' => 'cre', 'Cre12.g498500' => 'cre', 'Cre14.g630550' => 'cre', 'CsaV3_1G004620' => 'csa', 'CsaV3_5G024410' => 'csa', 'CsaV3_5G027370' => 'csa', 'CsaV3_5G027380' => 'csa', 'CsaV3_5G037980' => 'csa', 'CSS0012459' => 'camsi', 'CSS0014255' => 'camsi', 'CSS0016338' => 'camsi', 'CSS0024274' => 'camsi', 'CSS0024841' => 'camsi', 'CSS0033406' => 'camsi', 'CSS0039746' => 'camsi', 'CSS0046912' => 'camsi', 'DCAR_003899' => 'dca', 'DCAR_011134' => 'dca', 'DCAR_011201' => 'dca', 'DCAR_015045' => 'dca', 'DCAR_021687' => 'dca', 'Dinv06541' => 'din', 'Dinv32236' => 'din', 'Dinv33487' => 'din', 'Dinv35069' => 'din', 'Dinv35070' => 'din', 'Duzib133G1354' => 'dzi', 'Duzib147G0036' => 'dzi', 'Duzib147G0686' => 'dzi', 'Duzib147G1230' => 'dzi', 'Duzib235G0771' => 'dzi', 'Duzib264G0237' => 'dzi', 'ECA232G2826' => 'eca', 'ECA232G3461' => 'eca', 'ECA232G3699' => 'eca', 'ECA236G1178' => 'eca', 'ECA238G2799' => 'eca', 'EL10Ac2g02975' => 'bvu', 'EL10Ac4g08579' => 'bvu', 'EL10Ac4g08591' => 'bvu', 'EL10Ac8g19654' => 'bvu', 'Eucgr.E02422' => 'egr', 'Eucgr.I01792' => 'egr', 'Eucgr.I01793' => 'egr', 'Eucgr.I01939' => 'egr', 'FAN01G0668' => 'fan', 'FAN02G0043' => 'fan', 'FAN02G3192' => 'fan', 'FAN05G2035' => 'fan', 'FAN05G4619' => 'fan', 'FAN09G1077' => 'fan', 'FAN09G3753' => 'fan', 'FAN11G2893' => 'fan', 'FAN14G0697' => 'fan', 'FAN14G1115' => 'fan', 'FAN14G4111' => 'fan', 'FAN16G1841' => 'fan', 'FAN21G1335' => 'fan', 'FAN25G1463' => 'fan', 'FvH4_3g05290' => 'fve', 'FvH4_3g19500' => 'fve', 'FvH4_6g48710' => 'fve', 'FvH4_6g50760' => 'fve', 'FvH4_6g50761' => 'fve', 'Glyma.05G007200' => 'gma', 'Glyma.05G007402' => 'gma', 'Glyma.13G063400' => 'gma', 'Glyma.13G219400' => 'gma', 'Glyma.15G092800' => 'gma', 'Glyma.19G007800' => 'gma', 'Glyma.19G007900' => 'gma', 'Gohir.A07G220700' => 'ghi', 'Gohir.A09G017000' => 'ghi', 'Gohir.A10G042200' => 'ghi', 'Gohir.A11G067200' => 'ghi', 'Gohir.D07G227400' => 'ghi', 'Gohir.D09G015600' => 'ghi', 'Gohir.D10G043100' => 'ghi', 'Gohir.D11G071100' => 'ghi', 'Gorai.001G262300' => 'gra', 'Gorai.006G017800' => 'gra', 'Gorai.007G076400' => 'gra', 'Gorai.011G045700' => 'gra', 'GSVIVG01004589001' => 'vvi', 'GSVIVG01004602001' => 'vvi', 'GSVIVG01011396001' => 'vvi', 'GSVIVG01021522001' => 'vvi', 'GSVIVG01032469001' => 'vvi', 'GSVIVG01034494001' => 'vvi', 'HanXRQChr04g0115731' => 'han', 'HanXRQChr06g0175561' => 'han', 'HanXRQChr07g0198751' => 'han', 'HanXRQChr09g0265301' => 'han', 'HanXRQChr09g0266161' => 'han', 'HanXRQChr09g0266171' => 'han', 'HanXRQChr14g0444441' => 'han', 'HanXRQChr14g0450311' => 'han', 'HanXRQChr16g0517041' => 'han', 'Haze_05623' => 'cav', 'Haze_05624' => 'cav', 'Haze_14544' => 'cav', 'Haze_14675' => 'cav', 'Haze_14678' => 'cav', 'Haze_23968' => 'cav', 'Haze_26751' => 'cav', 'Haze_27020' => 'cav', 'Haze_27041' => 'cav', 'Hma1.2p1_0449F.1_g155450' => 'hma', 'Hma1.2p1_0449F.1_g155460' => 'hma', 'Hma1.2p1_0858F.1_g229390' => 'hma', 'Hma1.2p1_0993F.1_g245470' => 'hma', 'Hma1.2p1_0993F.1_g245480' => 'hma', 'Hma1.2p1_3249F.1_g334430' => 'hma', 'Hma1.2p1_3249F.1_g334440' => 'hma', 'HPP92_013058' => 'vpl', 'HPP92_015669' => 'vpl', 'HPP92_024321' => 'vpl', 'Hund10304' => 'sun', 'Hund15609' => 'sun', 'Hund15610' => 'sun', 'Hund17819' => 'sun', 'Lalb_Chr06g0175381' => 'lal', 'Lalb_Chr06g0176011' => 'lal', 'Lalb_Chr18g0055331' => 'lal', 'Lalb_Chr21g0319471' => 'lal', 'Lj1g0025125' => 'lja', 'Lj2A320T43' => 'lonja', 'Lj2g0001312' => 'lja', 'Lj2g0005159' => 'lja', 'Lj2g0012499' => 'lja', 'Lj2g0020540' => 'lja', 'Lj4g0023374' => 'lja', 'Lj6g0000691' => 'lja', 'Lj6g0012679' => 'lja', 'Lj6g0025469' => 'lja', 'Lj7A592T40' => 'lonja', 'Lj7C592G4' => 'lonja', 'Lju41A18T45' => 'lonja', 'Lsat_1_v5_gn_2_92021' => 'lsa', 'Lsat_1_v5_gn_4_178361' => 'lsa', 'Lsat_1_v5_gn_4_182480' => 'lsa', 'Lsat_1_v5_gn_4_182500' => 'lsa', 'Lsat_1_v5_gn_7_27640' => 'lsa', 'Manes.01G090200' => 'mes', 'Manes.15G167800' => 'mes', 'Manes.17G072000' => 'mes', 'Manes.17G116900' => 'mes', 'Manes.17G117000' => 'mes', 'Mapoly0003s0078' => 'mpo', 'MBI02_g24293_MAGBIO' => 'mbi', 'MBI02_g33229_MAGBIO' => 'mbi', 'MBI02_g43974_MAGBIO' => 'mbi', 'MBI02_g46874_MAGBIO' => 'mbi', 'MBI05_g22327_MAGBIO' => 'mbi', 'MBI05_g37763_MAGBIO' => 'mbi', 'MBI16_g05636_MAGBIO' => 'mbi', 'MCO04G080' => 'mco', 'MCO08G001' => 'mco', 'MCO10G250' => 'mco', 'MCO12G116' => 'mco', 'MCO16G488' => 'mco', 'MD05G1281600' => 'mdo', 'MD09G1032500' => 'mdo', 'MD09G1032600' => 'mdo', 'MD09G1050500' => 'mdo', 'MD17G1034100' => 'mdo', 'MD17G1034200' => 'mdo', 'Medtr2g019140' => 'mtr', 'Medtr6g007020' => 'mtr', 'Medtr6g007030' => 'mtr', 'Medtr6g007040' => 'mtr', 'Medtr6g007060' => 'mtr', 'Medtr6g011810' => 'mtr', 'MELO3C002750.2' => 'cme', 'MELO3C021546.2' => 'cme', 'MELO3C021547.2' => 'cme', 'MELO3C021985.2' => 'cme', 'Migut.H00115' => 'egut', 'Migut.H00917' => 'egut', 'Migut.K01371' => 'egut', 'Migut.M00896' => 'egut', 'MSTRG.15512' => 'ama', 'MSTRG.15513' => 'ama', 'MSTRG.23943' => 'ama', 'MSTRG.24019' => 'ama', 'MSTRG.3298' => 'ama', 'Nitab4.5_0000274g0150' => 'nta', 'Nitab4.5_0000833g0070' => 'nta', 'Nitab4.5_0001125g0070' => 'nta', 'Nitab4.5_0001709g0040' => 'nta', 'Nitab4.5_0002298g0090' => 'nta', 'Nitab4.5_0003337g0020' => 'nta', 'Nitab4.5_0006665g0010' => 'nta', 'Nitab4.5_0009022g0010' => 'nta', 'Nn4g22776' => 'nnu', 'Nn4g23147' => 'nnu', 'Nn4g26599' => 'nnu', 'Oeu030938.1' => 'oeu', 'Oeu043054.1' => 'oeu', 'Oeu062114.1' => 'oeu', 'Oeu062922.1' => 'oeu', 'Os04g0459900' => 'osa', 'Os05g0568900' => 'osa', 'Os05g0577800' => 'osa', 'Os05g0577900' => 'osa', 'Os12g0616600' => 'osa', 'Peaxi162Scf00129g01121' => 'pax', 'Peaxi162Scf00317g00115' => 'pax', 'Peaxi162Scf00777g00053' => 'pax', 'Peaxi162Scf00933g00005' => 'pax', 'PGR031G0308' => 'pgr', 'PGR142G0881' => 'pgr', 'PGR142G3003' => 'pgr', 'PGR142G3635' => 'pgr', 'PGSC0003DMG400000494' => 'stu', 'PGSC0003DMG400006931' => 'stu', 'PGSC0003DMG400006955' => 'stu', 'PGSC0003DMG400029873' => 'stu', 'Phvul.004G013600' => 'pvu', 'Phvul.004G013700' => 'pvu', 'Phvul.004G028200' => 'pvu', 'Phvul.006G166100' => 'pvu', 'Potri.001G348700' => 'ptr', 'Potri.001G348800' => 'ptr', 'Potri.004G065600' => 'ptr', 'Potri.004G129200' => 'ptr', 'Potri.011G083300' => 'ptr', 'Pp3c11_23840' => 'ppa', 'Pp3c14_9200' => 'ppa', 'Pp3c1_16510' => 'ppa', 'Pp3c1_26730' => 'ppa', 'Pp3c20_2930' => 'ppa', 'Pp3c25_9610' => 'ppa', 'Pp3c3_32970' => 'ppa', 'Pp3c4_1870' => 'ppa', 'Pp3s30_1210' => 'ppa', 'PRCOL_00000041' => 'pco', 'PRCOL_00000212' => 'pco', 'PRCOL_00004402' => 'pco', 'Prupe.3G268300' => 'ppe', 'Prupe.3G285400' => 'ppe', 'Prupe.3G285500' => 'ppe', 'Prupe.4G083000' => 'ppe', 'Prupe.8G052500' => 'ppe', 'Psat0s3401g0080' => 'psa', 'Psat1g057120' => 'psa', 'Psat1g057160' => 'psa', 'Psat1g074480' => 'psa', 'Psat1g191040' => 'psa', 'Psat1g219520' => 'psa', 'PSO017G2653' => 'pso', 'PSO017G2683' => 'pso', 'PSO017G3520' => 'pso', 'PSO017G4909' => 'pso', 'PSO017G5739' => 'pso', 'PSO017G6424' => 'pso', 'PSO170G6906' => 'pso', 'PSO323G0001' => 'pso', 'PSO396G0001' => 'pso', 'PSO478G2102' => 'pso', 'PSO478G3469' => 'pso', 'PSO478G5059' => 'pso', 'PSO500G0136' => 'pso', 'PSO675G4930' => 'pso', 'PSO706G0006' => 'pso', 'PSO706G0012' => 'pso', 'PSO706G0014' => 'pso', 'PSO761G0233' => 'pso', 'QL02p076341' => 'qlo', 'QL02p076349' => 'qlo', 'QL02p081685' => 'qlo', 'QL05p056041' => 'qlo', 'QL05p057103' => 'qlo', 'QL05p057213' => 'qlo', 'QL05p057244' => 'qlo', 'QL05p057250' => 'qlo', 'QL09p015613' => 'qlo', 'RcHm_v2.0_Chr2g0168631' => 'rch', 'RcHm_v2.0_Chr2g0171701' => 'rch', 'RcHm_v2.0_Chr2g0171711' => 'rch', 'RcHm_v2.0_Chr5g0014431' => 'rch', 'Rhsim08G0054100' => 'rsi', 'Rhsim10G0021400' => 'rsi', 'Rhsim10G0021500' => 'rsi', 'Rhsim10G0040000' => 'rsi', 'Rhsim13G0115200' => 'rsi', 'Sabra04G0088900' => 'sbr', 'Sabra11G0066300' => 'sbr', 'Sabra16G0228300' => 'sbr', 'SalBow1G5303' => 'sbo', 'SalBow1G7722' => 'sbo', 'SalBow7G2409' => 'sbo', 'SalBow8G4304' => 'sbo', 'Sc03g0007930' => 'sci', 'Sc14g0005940' => 'sci', 'Sc16g0003610' => 'sci', 'Sc24g0001720' => 'sci', 'Sed0005946' => 'sed', 'Sed0007195' => 'sed', 'Sed0007586' => 'sed', 'Sed0026124' => 'sed', 'SEGI_03269' => 'sgi', 'SEGI_07909' => 'sgi', 'SEGI_12261' => 'sgi', 'SEGI_13753' => 'sgi', 'SEGI_15197' => 'sgi', 'SEGI_18628' => 'sgi', 'SEGI_26747' => 'sgi', 'SEGI_37884' => 'sgi', 'SGA_v2.0_scaffold135G34875' => 'sas', 'SGA_v2.0_scaffold1G00192' => 'sas', 'SGA_v2.0_scaffold30G12466' => 'sas', 'SGA_v2.0_scaffold59G20688' => 'sas', 'SMO134G0095' => 'smo', 'SMO145G0086' => 'smo', 'SMO171G0065' => 'smo', 'SMO351G0147' => 'smo', 'SMO361G0158' => 'smo', 'Solyc02g067360.3' => 'sly', 'Solyc02g067740.4' => 'sly', 'Solyc02g086830.3' => 'sly', 'Solyc08g048550.3' => 'sly', 'Sopen02g016500' => 'spe', 'Sopen02g016860' => 'spe', 'Sopen02g031600' => 'spe', 'Sopen07g006450' => 'spe', 'Sopen08g010960' => 'spe', 'Sp2g16970' => 'spa', 'Sp2g16980' => 'spa', 'Sp7g02240' => 'spa', 'Sp7g15700' => 'spa', 'TAR371G0404' => 'tar', 'TAR374G1405' => 'tar', 'TAR627G0692' => 'tar', 'TAR629G1635' => 'tar', 'TAR629G2625' => 'tar', 'THA.LOC104805392' => 'tha', 'THA.LOC104812860' => 'tha', 'THA.LOC104823191' => 'tha', 'THA.LOC104825337' => 'tha', 'Thecc.04G010000' => 'tca', 'Thecc.04G010100' => 'tca', 'Thecc.04G080500' => 'tca', 'Thecc.04G111800' => 'tca', 'Thecc.05G252100' => 'tca', 'Thecc.06G148200' => 'tca', 'Thhalv10004246m.g' => 'esa', 'Thhalv10004293m.g' => 'esa', 'Thhalv10025708m.g' => 'esa', 'Thhalv10027761m.g' => 'esa', 'TPR.G18830' => 'tpr', 'TPR.G20351' => 'tpr', 'TPR.G21391' => 'tpr', 'TPR.G2265' => 'tpr', 'TPR.G2270' => 'tpr', 'TPR.G26235' => 'tpr', 'TPR.G27993' => 'tpr', 'TWI12G0063' => 'twi', 'TWI32G0041' => 'twi', 'TWI53G0561' => 'twi', 'TWI56G1008' => 'twi', 'unitig_32.g10673' => 'ugi', 'unitig_748.g7673' => 'ugi', 'unitig_88.g27778' => 'ugi', 'unitig_899.g15516' => 'ugi', 'vmacro03335' => 'vma', 'vmacro05702' => 'vma', 'vmacro05831' => 'vma', 'vmacro05832' => 'vma', 'vmacro18250' => 'vma', 'vmacro18251' => 'vma', 'vmacro18252' => 'vma', 'vmacro23476' => 'vma', 'VMungo0464G0407' => 'vmu', 'VMungo0464G1062' => 'vmu', 'VMungo0464G2191' => 'vmu', 'VMungo0540G2226' => 'vmu', 'Zm00001eb023990' => 'zma', 'Zm00001eb031870' => 'zma', 'Zm00001eb080810' => 'zma', 'Zm00001eb296290' => 'zma', 'Zm00001eb313910' => 'zma', 'Zm00001eb339680' => 'zma', 'Zm00001eb344110' => 'zma', 'Zm00001eb344500' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001104', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001104' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001104', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '555', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001104' ) ), 'genes' => array( 'A01p10280' => 'bna', 'A02p35680' => 'bna', 'A04p12530' => 'bna', 'A06p40770' => 'bna', 'A06p40780' => 'bna', 'A06p40790' => 'bna', 'A07p28190' => 'bna', 'Aa31LG2G4840' => 'aar', 'Aa31LG6G1070' => 'aar', 'Aa31LG9G16340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.423' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.221' => 'aag', 'Actinidia06020' => 'ach', 'Actinidia06087' => 'ach', 'Actinidia16934' => 'ach', 'Actinidia33715' => 'ach', 'Actinidia35743' => 'ach', 'Actinidia35744' => 'ach', 'Actinidia36089' => 'ach', 'Ah.06g187130' => 'amhyb', 'Ah.07g199000' => 'amhyb', 'Ah.14g086390' => 'amhyb', 'AL1G21640' => 'aly', 'AL5G17420' => 'aly', 'AL5G17430' => 'aly', 'AL7G36010' => 'aly', 'AL7G50410' => 'aly', 'Aqoxy3G00645' => 'aox', 'Aqoxy3G01030' => 'aox', 'Aqoxy3G01031' => 'aox', 'Aqoxy3G02957' => 'aox', 'Aqoxy4G00068' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E40C5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VZU0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M213TK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2U024' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA6DSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHR6Q8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLD0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5BZSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE11WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNKJ1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5509F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZA2NY6' => 'arhy', 'AT3G27925' => 'ath', 'AT3G27930' => 'ath', 'AT4G18370' => 'ath', 'AT5G39830' => 'ath', 'ATR0564G198' => 'atr', 'ATR0730G028' => 'atr', 'ATR0730G148' => 'atr', 'ATR1098G116' => 'atr', 'Atru.chr10.1174' => 'acertr', 'Atru.chr6.2305' => 'acertr', 'Atru.chr6.2306' => 'acertr', 'Atru.chr8.144' => 'acertr', 'AUR62002715' => 'cqu', 'AUR62029365' => 'cqu', 'AUR62030175' => 'cqu', 'AUR62034399' => 'cqu', 'AUR62034754' => 'cqu', 'AUR62039816' => 'cqu', 'AUR62043056' => 'cqu', 'AUR62043218' => 'cqu', 'BcaB06g27379' => 'bca', 'BcaB07g30139' => 'bca', 'BcaC01g03604' => 'bca', 'BcaC02g08313' => 'bca', 'BcaC03g17495' => 'bca', 'BcaC04g21585' => 'bca', 'BcaC06g30950' => 'bca', 'BcaC06g30951' => 'bca', 'BcaC06g33770' => 'bca', 'BcaC06g33771' => 'bca', 'BcaC07g41832' => 'bca', 'BcaC09g51528' => 'bca', 'BcaNung00010' => 'bca', 'BolC1t01199H' => 'bol', 'BolC2t11515H' => 'bol', 'BolC2t11520H' => 'bol', 'BolC4t26211H' => 'bol', 'BolC4t27122H' => 'bol', 'BolC7t44223H' => 'bol', 'BolC7t44224H' => 'bol', 'BraA01t00975Z' => 'bra', 'BraA02t08570Z' => 'bra', 'BraA02t08571Z' => 'bra', 'BraA04t16914Z' => 'bra', 'BraA06t26998Z' => 'bra', 'BraA06t26999Z' => 'bra', 'C01p12230' => 'bna', 'C02p45330' => 'bna', 'C02p54520' => 'bna', 'C02p54570' => 'bna', 'C04p46270' => 'bna', 'C07p37120' => 'bna', 'C07p37130' => 'bna', 'C08p49060' => 'bna', 'CAN.G1145.1' => 'can', 'CAN.G1275.4' => 'can', 'CAN.G206.27' => 'can', 'CAN.G685.22' => 'can', 'CAN.G973.9' => 'can', 'CANSAT35G0592' => 'cansat', 'CANSAT64G0855' => 'cansat', 'CANSAT64G1134' => 'cansat', 'CANSAT64G2394' => 'cansat', 'CANSAT64G2658' => 'cansat', 'CARHR149490' => 'chi', 'CARHR149500' => 'chi', 'CARHR225140' => 'chi', 'CARHR262400' => 'chi', 'Carub.0005s0649' => 'cru', 'Carub.0005s0650' => 'cru', 'Carub.0007s2292' => 'cru', 'Carub.0007s3590' => 'cru', 'Ca_00531_v3' => 'car', 'Ca_04192_v3' => 'car', 'Ca_04279_v3' => 'car', 'Ca_26507_v3' => 'car', 'Ca_29015_v3' => 'car', 'CBR_g12057' => 'cbr', 'CBR_g19701' => 'cbr', 'CBR_g37528' => 'cbr', 'CBR_g50353' => 'cbr', 'CBR_g8333' => 'cbr', 'Cc07_g02170' => 'ccan', 'Cc07_g02180' => 'ccan', 'Cc07_g03310' => 'ccan', 'Cc11_g03520' => 'ccan', 'CDE02G2406' => 'cde', 'CDE02G4088' => 'cde', 'CDE04G3157' => 'cde', 'CDE05G3320' => 'cde', 'CDE06G1047' => 'cde', 'CDE06G1079' => 'cde', 'CDE06G1183' => 'cde', 'CDE06G2339' => 'cde', 'CDE06G2743' => 'cde', 'Cfa007422' => 'cfa', 'Cfa007542' => 'cfa', 'Cfa008566' => 'cfa', 'Cfa008567' => 'cfa', 'Ciclev10012082m.g' => 'ccl', 'Ciclev10015214m.g' => 'ccl', 'Ciclev10015353m.g' => 'ccl', 'Ciclev10016002m.g' => 'ccl', 'Ciclev10020491m.g' => 'ccl', 'CiPaw.03G027600' => 'cil', 'CiPaw.03G038600' => 'cil', 'CiPaw.03G038700' => 'cil', 'CiPaw.04G025200' => 'cil', 'CiPaw.10G090500' => 'cil', 'ClCG03G006710' => 'cla', 'ClCG09G018300' => 'cla', 'ClCG09G018970' => 'cla', 'ClCG09G018980' => 'cla', 'COL.COLO4_26643' => 'col', 'COL.COLO4_28978' => 'col', 'COL.COLO4_28980' => 'col', 'Cpa.g.sc14.5' => 'cpa', 'Cpa.g.sc17.5' => 'cpa', 'Cpa.g.sc215.8' => 'cpa', 'Cpa.g.sc215.9' => 'cpa', 'Cre01.g028350' => 'cre', 'Cre02.g088400' => 'cre', 'Cre02.g110600' => 'cre', 'Cre08.g358552' => 'cre', 'Cre12.g498500' => 'cre', 'Cre14.g630550' => 'cre', 'CsaV3_1G004620' => 'csa', 'CsaV3_5G024410' => 'csa', 'CsaV3_5G027370' => 'csa', 'CsaV3_5G027380' => 'csa', 'CsaV3_5G037980' => 'csa', 'CSS0012459' => 'camsi', 'CSS0014255' => 'camsi', 'CSS0016338' => 'camsi', 'CSS0024274' => 'camsi', 'CSS0024841' => 'camsi', 'CSS0033406' => 'camsi', 'CSS0039746' => 'camsi', 'CSS0046912' => 'camsi', 'DCAR_003899' => 'dca', 'DCAR_011134' => 'dca', 'DCAR_011201' => 'dca', 'DCAR_015045' => 'dca', 'DCAR_021687' => 'dca', 'Dinv06541' => 'din', 'Dinv32236' => 'din', 'Dinv33487' => 'din', 'Dinv35069' => 'din', 'Dinv35070' => 'din', 'Duzib133G1354' => 'dzi', 'Duzib147G0036' => 'dzi', 'Duzib147G0686' => 'dzi', 'Duzib147G1230' => 'dzi', 'Duzib235G0771' => 'dzi', 'Duzib264G0237' => 'dzi', 'ECA232G2826' => 'eca', 'ECA232G3461' => 'eca', 'ECA232G3699' => 'eca', 'ECA236G1178' => 'eca', 'ECA238G2799' => 'eca', 'EL10Ac2g02975' => 'bvu', 'EL10Ac4g08579' => 'bvu', 'EL10Ac4g08591' => 'bvu', 'EL10Ac8g19654' => 'bvu', 'Eucgr.E02422' => 'egr', 'Eucgr.I01792' => 'egr', 'Eucgr.I01793' => 'egr', 'Eucgr.I01939' => 'egr', 'FAN01G0668' => 'fan', 'FAN02G0043' => 'fan', 'FAN02G3192' => 'fan', 'FAN05G2035' => 'fan', 'FAN05G4619' => 'fan', 'FAN09G1077' => 'fan', 'FAN09G3753' => 'fan', 'FAN11G2893' => 'fan', 'FAN14G0697' => 'fan', 'FAN14G1115' => 'fan', 'FAN14G4111' => 'fan', 'FAN16G1841' => 'fan', 'FAN21G1335' => 'fan', 'FAN25G1463' => 'fan', 'FvH4_3g05290' => 'fve', 'FvH4_3g19500' => 'fve', 'FvH4_6g48710' => 'fve', 'FvH4_6g50760' => 'fve', 'FvH4_6g50761' => 'fve', 'Glyma.05G007200' => 'gma', 'Glyma.05G007402' => 'gma', 'Glyma.13G063400' => 'gma', 'Glyma.13G219400' => 'gma', 'Glyma.15G092800' => 'gma', 'Glyma.19G007800' => 'gma', 'Glyma.19G007900' => 'gma', 'Gohir.A07G220700' => 'ghi', 'Gohir.A09G017000' => 'ghi', 'Gohir.A10G042200' => 'ghi', 'Gohir.A11G067200' => 'ghi', 'Gohir.D07G227400' => 'ghi', 'Gohir.D09G015600' => 'ghi', 'Gohir.D10G043100' => 'ghi', 'Gohir.D11G071100' => 'ghi', 'Gorai.001G262300' => 'gra', 'Gorai.006G017800' => 'gra', 'Gorai.007G076400' => 'gra', 'Gorai.011G045700' => 'gra', 'GSVIVG01004589001' => 'vvi', 'GSVIVG01004602001' => 'vvi', 'GSVIVG01011396001' => 'vvi', 'GSVIVG01021522001' => 'vvi', 'GSVIVG01032469001' => 'vvi', 'GSVIVG01034494001' => 'vvi', 'HanXRQChr04g0115731' => 'han', 'HanXRQChr06g0175561' => 'han', 'HanXRQChr07g0198751' => 'han', 'HanXRQChr09g0265301' => 'han', 'HanXRQChr09g0266161' => 'han', 'HanXRQChr09g0266171' => 'han', 'HanXRQChr14g0444441' => 'han', 'HanXRQChr14g0450311' => 'han', 'HanXRQChr16g0517041' => 'han', 'Haze_05623' => 'cav', 'Haze_05624' => 'cav', 'Haze_14544' => 'cav', 'Haze_14675' => 'cav', 'Haze_14678' => 'cav', 'Haze_23968' => 'cav', 'Haze_26751' => 'cav', 'Haze_27020' => 'cav', 'Haze_27041' => 'cav', 'Hma1.2p1_0449F.1_g155450' => 'hma', 'Hma1.2p1_0449F.1_g155460' => 'hma', 'Hma1.2p1_0858F.1_g229390' => 'hma', 'Hma1.2p1_0993F.1_g245470' => 'hma', 'Hma1.2p1_0993F.1_g245480' => 'hma', 'Hma1.2p1_3249F.1_g334430' => 'hma', 'Hma1.2p1_3249F.1_g334440' => 'hma', 'HPP92_013058' => 'vpl', 'HPP92_015669' => 'vpl', 'HPP92_024321' => 'vpl', 'Hund10304' => 'sun', 'Hund15609' => 'sun', 'Hund15610' => 'sun', 'Hund17819' => 'sun', 'Lalb_Chr06g0175381' => 'lal', 'Lalb_Chr06g0176011' => 'lal', 'Lalb_Chr18g0055331' => 'lal', 'Lalb_Chr21g0319471' => 'lal', 'Lj1g0025125' => 'lja', 'Lj2A320T43' => 'lonja', 'Lj2g0001312' => 'lja', 'Lj2g0005159' => 'lja', 'Lj2g0012499' => 'lja', 'Lj2g0020540' => 'lja', 'Lj4g0023374' => 'lja', 'Lj6g0000691' => 'lja', 'Lj6g0012679' => 'lja', 'Lj6g0025469' => 'lja', 'Lj7A592T40' => 'lonja', 'Lj7C592G4' => 'lonja', 'Lju41A18T45' => 'lonja', 'Lsat_1_v5_gn_2_92021' => 'lsa', 'Lsat_1_v5_gn_4_178361' => 'lsa', 'Lsat_1_v5_gn_4_182480' => 'lsa', 'Lsat_1_v5_gn_4_182500' => 'lsa', 'Lsat_1_v5_gn_7_27640' => 'lsa', 'Manes.01G090200' => 'mes', 'Manes.15G167800' => 'mes', 'Manes.17G072000' => 'mes', 'Manes.17G116900' => 'mes', 'Manes.17G117000' => 'mes', 'Mapoly0003s0078' => 'mpo', 'MBI02_g24293_MAGBIO' => 'mbi', 'MBI02_g33229_MAGBIO' => 'mbi', 'MBI02_g43974_MAGBIO' => 'mbi', 'MBI02_g46874_MAGBIO' => 'mbi', 'MBI05_g22327_MAGBIO' => 'mbi', 'MBI05_g37763_MAGBIO' => 'mbi', 'MBI16_g05636_MAGBIO' => 'mbi', 'MCO04G080' => 'mco', 'MCO08G001' => 'mco', 'MCO10G250' => 'mco', 'MCO12G116' => 'mco', 'MCO16G488' => 'mco', 'MD05G1281600' => 'mdo', 'MD09G1032500' => 'mdo', 'MD09G1032600' => 'mdo', 'MD09G1050500' => 'mdo', 'MD17G1034100' => 'mdo', 'MD17G1034200' => 'mdo', 'Medtr2g019140' => 'mtr', 'Medtr6g007020' => 'mtr', 'Medtr6g007030' => 'mtr', 'Medtr6g007040' => 'mtr', 'Medtr6g007060' => 'mtr', 'Medtr6g011810' => 'mtr', 'MELO3C002750.2' => 'cme', 'MELO3C021546.2' => 'cme', 'MELO3C021547.2' => 'cme', 'MELO3C021985.2' => 'cme', 'Migut.H00115' => 'egut', 'Migut.H00917' => 'egut', 'Migut.K01371' => 'egut', 'Migut.M00896' => 'egut', 'MSTRG.15512' => 'ama', 'MSTRG.15513' => 'ama', 'MSTRG.23943' => 'ama', 'MSTRG.24019' => 'ama', 'MSTRG.3298' => 'ama', 'Nitab4.5_0000274g0150' => 'nta', 'Nitab4.5_0000833g0070' => 'nta', 'Nitab4.5_0001125g0070' => 'nta', 'Nitab4.5_0001709g0040' => 'nta', 'Nitab4.5_0002298g0090' => 'nta', 'Nitab4.5_0003337g0020' => 'nta', 'Nitab4.5_0006665g0010' => 'nta', 'Nitab4.5_0009022g0010' => 'nta', 'Nn4g22776' => 'nnu', 'Nn4g23147' => 'nnu', 'Nn4g26599' => 'nnu', 'Oeu030938.1' => 'oeu', 'Oeu043054.1' => 'oeu', 'Oeu062114.1' => 'oeu', 'Oeu062922.1' => 'oeu', 'Os04g0459900' => 'osa', 'Os05g0568900' => 'osa', 'Os05g0577800' => 'osa', 'Os05g0577900' => 'osa', 'Os12g0616600' => 'osa', 'Peaxi162Scf00129g01121' => 'pax', 'Peaxi162Scf00317g00115' => 'pax', 'Peaxi162Scf00777g00053' => 'pax', 'Peaxi162Scf00933g00005' => 'pax', 'PGR031G0308' => 'pgr', 'PGR142G0881' => 'pgr', 'PGR142G3003' => 'pgr', 'PGR142G3635' => 'pgr', 'PGSC0003DMG400000494' => 'stu', 'PGSC0003DMG400006931' => 'stu', 'PGSC0003DMG400006955' => 'stu', 'PGSC0003DMG400029873' => 'stu', 'Phvul.004G013600' => 'pvu', 'Phvul.004G013700' => 'pvu', 'Phvul.004G028200' => 'pvu', 'Phvul.006G166100' => 'pvu', 'Potri.001G348700' => 'ptr', 'Potri.001G348800' => 'ptr', 'Potri.004G065600' => 'ptr', 'Potri.004G129200' => 'ptr', 'Potri.011G083300' => 'ptr', 'Pp3c11_23840' => 'ppa', 'Pp3c14_9200' => 'ppa', 'Pp3c1_16510' => 'ppa', 'Pp3c1_26730' => 'ppa', 'Pp3c20_2930' => 'ppa', 'Pp3c25_9610' => 'ppa', 'Pp3c3_32970' => 'ppa', 'Pp3c4_1870' => 'ppa', 'Pp3s30_1210' => 'ppa', 'PRCOL_00000041' => 'pco', 'PRCOL_00000212' => 'pco', 'PRCOL_00004402' => 'pco', 'Prupe.3G268300' => 'ppe', 'Prupe.3G285400' => 'ppe', 'Prupe.3G285500' => 'ppe', 'Prupe.4G083000' => 'ppe', 'Prupe.8G052500' => 'ppe', 'Psat0s3401g0080' => 'psa', 'Psat1g057120' => 'psa', 'Psat1g057160' => 'psa', 'Psat1g074480' => 'psa', 'Psat1g191040' => 'psa', 'Psat1g219520' => 'psa', 'PSO017G2653' => 'pso', 'PSO017G2683' => 'pso', 'PSO017G3520' => 'pso', 'PSO017G4909' => 'pso', 'PSO017G5739' => 'pso', 'PSO017G6424' => 'pso', 'PSO170G6906' => 'pso', 'PSO323G0001' => 'pso', 'PSO396G0001' => 'pso', 'PSO478G2102' => 'pso', 'PSO478G3469' => 'pso', 'PSO478G5059' => 'pso', 'PSO500G0136' => 'pso', 'PSO675G4930' => 'pso', 'PSO706G0006' => 'pso', 'PSO706G0012' => 'pso', 'PSO706G0014' => 'pso', 'PSO761G0233' => 'pso', 'QL02p076341' => 'qlo', 'QL02p076349' => 'qlo', 'QL02p081685' => 'qlo', 'QL05p056041' => 'qlo', 'QL05p057103' => 'qlo', 'QL05p057213' => 'qlo', 'QL05p057244' => 'qlo', 'QL05p057250' => 'qlo', 'QL09p015613' => 'qlo', 'RcHm_v2.0_Chr2g0168631' => 'rch', 'RcHm_v2.0_Chr2g0171701' => 'rch', 'RcHm_v2.0_Chr2g0171711' => 'rch', 'RcHm_v2.0_Chr5g0014431' => 'rch', 'Rhsim08G0054100' => 'rsi', 'Rhsim10G0021400' => 'rsi', 'Rhsim10G0021500' => 'rsi', 'Rhsim10G0040000' => 'rsi', 'Rhsim13G0115200' => 'rsi', 'Sabra04G0088900' => 'sbr', 'Sabra11G0066300' => 'sbr', 'Sabra16G0228300' => 'sbr', 'SalBow1G5303' => 'sbo', 'SalBow1G7722' => 'sbo', 'SalBow7G2409' => 'sbo', 'SalBow8G4304' => 'sbo', 'Sc03g0007930' => 'sci', 'Sc14g0005940' => 'sci', 'Sc16g0003610' => 'sci', 'Sc24g0001720' => 'sci', 'Sed0005946' => 'sed', 'Sed0007195' => 'sed', 'Sed0007586' => 'sed', 'Sed0026124' => 'sed', 'SEGI_03269' => 'sgi', 'SEGI_07909' => 'sgi', 'SEGI_12261' => 'sgi', 'SEGI_13753' => 'sgi', 'SEGI_15197' => 'sgi', 'SEGI_18628' => 'sgi', 'SEGI_26747' => 'sgi', 'SEGI_37884' => 'sgi', 'SGA_v2.0_scaffold135G34875' => 'sas', 'SGA_v2.0_scaffold1G00192' => 'sas', 'SGA_v2.0_scaffold30G12466' => 'sas', 'SGA_v2.0_scaffold59G20688' => 'sas', 'SMO134G0095' => 'smo', 'SMO145G0086' => 'smo', 'SMO171G0065' => 'smo', 'SMO351G0147' => 'smo', 'SMO361G0158' => 'smo', 'Solyc02g067360.3' => 'sly', 'Solyc02g067740.4' => 'sly', 'Solyc02g086830.3' => 'sly', 'Solyc08g048550.3' => 'sly', 'Sopen02g016500' => 'spe', 'Sopen02g016860' => 'spe', 'Sopen02g031600' => 'spe', 'Sopen07g006450' => 'spe', 'Sopen08g010960' => 'spe', 'Sp2g16970' => 'spa', 'Sp2g16980' => 'spa', 'Sp7g02240' => 'spa', 'Sp7g15700' => 'spa', 'TAR371G0404' => 'tar', 'TAR374G1405' => 'tar', 'TAR627G0692' => 'tar', 'TAR629G1635' => 'tar', 'TAR629G2625' => 'tar', 'THA.LOC104805392' => 'tha', 'THA.LOC104812860' => 'tha', 'THA.LOC104823191' => 'tha', 'THA.LOC104825337' => 'tha', 'Thecc.04G010000' => 'tca', 'Thecc.04G010100' => 'tca', 'Thecc.04G080500' => 'tca', 'Thecc.04G111800' => 'tca', 'Thecc.05G252100' => 'tca', 'Thecc.06G148200' => 'tca', 'Thhalv10004246m.g' => 'esa', 'Thhalv10004293m.g' => 'esa', 'Thhalv10025708m.g' => 'esa', 'Thhalv10027761m.g' => 'esa', 'TPR.G18830' => 'tpr', 'TPR.G20351' => 'tpr', 'TPR.G21391' => 'tpr', 'TPR.G2265' => 'tpr', 'TPR.G2270' => 'tpr', 'TPR.G26235' => 'tpr', 'TPR.G27993' => 'tpr', 'TWI12G0063' => 'twi', 'TWI32G0041' => 'twi', 'TWI53G0561' => 'twi', 'TWI56G1008' => 'twi', 'unitig_32.g10673' => 'ugi', 'unitig_748.g7673' => 'ugi', 'unitig_88.g27778' => 'ugi', 'unitig_899.g15516' => 'ugi', 'vmacro03335' => 'vma', 'vmacro05702' => 'vma', 'vmacro05831' => 'vma', 'vmacro05832' => 'vma', 'vmacro18250' => 'vma', 'vmacro18251' => 'vma', 'vmacro18252' => 'vma', 'vmacro23476' => 'vma', 'VMungo0464G0407' => 'vmu', 'VMungo0464G1062' => 'vmu', 'VMungo0464G2191' => 'vmu', 'VMungo0540G2226' => 'vmu', 'Zm00001eb023990' => 'zma', 'Zm00001eb031870' => 'zma', 'Zm00001eb080810' => 'zma', 'Zm00001eb296290' => 'zma', 'Zm00001eb313910' => 'zma', 'Zm00001eb339680' => 'zma', 'Zm00001eb344110' => 'zma', 'Zm00001eb344500' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001104' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001104' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001104' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001104' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001104', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '555', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p10280' => 'bna', 'A02p35680' => 'bna', 'A04p12530' => 'bna', 'A06p40770' => 'bna', 'A06p40780' => 'bna', 'A06p40790' => 'bna', 'A07p28190' => 'bna', 'Aa31LG2G4840' => 'aar', 'Aa31LG6G1070' => 'aar', 'Aa31LG9G16340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.423' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.221' => 'aag', 'Actinidia06020' => 'ach', 'Actinidia06087' => 'ach', 'Actinidia16934' => 'ach', 'Actinidia33715' => 'ach', 'Actinidia35743' => 'ach', 'Actinidia35744' => 'ach', 'Actinidia36089' => 'ach', 'Ah.06g187130' => 'amhyb', 'Ah.07g199000' => 'amhyb', 'Ah.14g086390' => 'amhyb', 'AL1G21640' => 'aly', 'AL5G17420' => 'aly', 'AL5G17430' => 'aly', 'AL7G36010' => 'aly', 'AL7G50410' => 'aly', 'Aqoxy3G00645' => 'aox', 'Aqoxy3G01030' => 'aox', 'Aqoxy3G01031' => 'aox', 'Aqoxy3G02957' => 'aox', 'Aqoxy4G00068' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E40C5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VZU0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M213TK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2U024' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA6DSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHR6Q8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLD0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5BZSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE11WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNKJ1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5509F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZA2NY6' => 'arhy', 'AT3G27925' => 'ath', 'AT3G27930' => 'ath', 'AT4G18370' => 'ath', 'AT5G39830' => 'ath', 'ATR0564G198' => 'atr', 'ATR0730G028' => 'atr', 'ATR0730G148' => 'atr', 'ATR1098G116' => 'atr', 'Atru.chr10.1174' => 'acertr', 'Atru.chr6.2305' => 'acertr', 'Atru.chr6.2306' => 'acertr', 'Atru.chr8.144' => 'acertr', 'AUR62002715' => 'cqu', 'AUR62029365' => 'cqu', 'AUR62030175' => 'cqu', 'AUR62034399' => 'cqu', 'AUR62034754' => 'cqu', 'AUR62039816' => 'cqu', 'AUR62043056' => 'cqu', 'AUR62043218' => 'cqu', 'BcaB06g27379' => 'bca', 'BcaB07g30139' => 'bca', 'BcaC01g03604' => 'bca', 'BcaC02g08313' => 'bca', 'BcaC03g17495' => 'bca', 'BcaC04g21585' => 'bca', 'BcaC06g30950' => 'bca', 'BcaC06g30951' => 'bca', 'BcaC06g33770' => 'bca', 'BcaC06g33771' => 'bca', 'BcaC07g41832' => 'bca', 'BcaC09g51528' => 'bca', 'BcaNung00010' => 'bca', 'BolC1t01199H' => 'bol', 'BolC2t11515H' => 'bol', 'BolC2t11520H' => 'bol', 'BolC4t26211H' => 'bol', 'BolC4t27122H' => 'bol', 'BolC7t44223H' => 'bol', 'BolC7t44224H' => 'bol', 'BraA01t00975Z' => 'bra', 'BraA02t08570Z' => 'bra', 'BraA02t08571Z' => 'bra', 'BraA04t16914Z' => 'bra', 'BraA06t26998Z' => 'bra', 'BraA06t26999Z' => 'bra', 'C01p12230' => 'bna', 'C02p45330' => 'bna', 'C02p54520' => 'bna', 'C02p54570' => 'bna', 'C04p46270' => 'bna', 'C07p37120' => 'bna', 'C07p37130' => 'bna', 'C08p49060' => 'bna', 'CAN.G1145.1' => 'can', 'CAN.G1275.4' => 'can', 'CAN.G206.27' => 'can', 'CAN.G685.22' => 'can', 'CAN.G973.9' => 'can', 'CANSAT35G0592' => 'cansat', 'CANSAT64G0855' => 'cansat', 'CANSAT64G1134' => 'cansat', 'CANSAT64G2394' => 'cansat', 'CANSAT64G2658' => 'cansat', 'CARHR149490' => 'chi', 'CARHR149500' => 'chi', 'CARHR225140' => 'chi', 'CARHR262400' => 'chi', 'Carub.0005s0649' => 'cru', 'Carub.0005s0650' => 'cru', 'Carub.0007s2292' => 'cru', 'Carub.0007s3590' => 'cru', 'Ca_00531_v3' => 'car', 'Ca_04192_v3' => 'car', 'Ca_04279_v3' => 'car', 'Ca_26507_v3' => 'car', 'Ca_29015_v3' => 'car', 'CBR_g12057' => 'cbr', 'CBR_g19701' => 'cbr', 'CBR_g37528' => 'cbr', 'CBR_g50353' => 'cbr', 'CBR_g8333' => 'cbr', 'Cc07_g02170' => 'ccan', 'Cc07_g02180' => 'ccan', 'Cc07_g03310' => 'ccan', 'Cc11_g03520' => 'ccan', 'CDE02G2406' => 'cde', 'CDE02G4088' => 'cde', 'CDE04G3157' => 'cde', 'CDE05G3320' => 'cde', 'CDE06G1047' => 'cde', 'CDE06G1079' => 'cde', 'CDE06G1183' => 'cde', 'CDE06G2339' => 'cde', 'CDE06G2743' => 'cde', 'Cfa007422' => 'cfa', 'Cfa007542' => 'cfa', 'Cfa008566' => 'cfa', 'Cfa008567' => 'cfa', 'Ciclev10012082m.g' => 'ccl', 'Ciclev10015214m.g' => 'ccl', 'Ciclev10015353m.g' => 'ccl', 'Ciclev10016002m.g' => 'ccl', 'Ciclev10020491m.g' => 'ccl', 'CiPaw.03G027600' => 'cil', 'CiPaw.03G038600' => 'cil', 'CiPaw.03G038700' => 'cil', 'CiPaw.04G025200' => 'cil', 'CiPaw.10G090500' => 'cil', 'ClCG03G006710' => 'cla', 'ClCG09G018300' => 'cla', 'ClCG09G018970' => 'cla', 'ClCG09G018980' => 'cla', 'COL.COLO4_26643' => 'col', 'COL.COLO4_28978' => 'col', 'COL.COLO4_28980' => 'col', 'Cpa.g.sc14.5' => 'cpa', 'Cpa.g.sc17.5' => 'cpa', 'Cpa.g.sc215.8' => 'cpa', 'Cpa.g.sc215.9' => 'cpa', 'Cre01.g028350' => 'cre', 'Cre02.g088400' => 'cre', 'Cre02.g110600' => 'cre', 'Cre08.g358552' => 'cre', 'Cre12.g498500' => 'cre', 'Cre14.g630550' => 'cre', 'CsaV3_1G004620' => 'csa', 'CsaV3_5G024410' => 'csa', 'CsaV3_5G027370' => 'csa', 'CsaV3_5G027380' => 'csa', 'CsaV3_5G037980' => 'csa', 'CSS0012459' => 'camsi', 'CSS0014255' => 'camsi', 'CSS0016338' => 'camsi', 'CSS0024274' => 'camsi', 'CSS0024841' => 'camsi', 'CSS0033406' => 'camsi', 'CSS0039746' => 'camsi', 'CSS0046912' => 'camsi', 'DCAR_003899' => 'dca', 'DCAR_011134' => 'dca', 'DCAR_011201' => 'dca', 'DCAR_015045' => 'dca', 'DCAR_021687' => 'dca', 'Dinv06541' => 'din', 'Dinv32236' => 'din', 'Dinv33487' => 'din', 'Dinv35069' => 'din', 'Dinv35070' => 'din', 'Duzib133G1354' => 'dzi', 'Duzib147G0036' => 'dzi', 'Duzib147G0686' => 'dzi', 'Duzib147G1230' => 'dzi', 'Duzib235G0771' => 'dzi', 'Duzib264G0237' => 'dzi', 'ECA232G2826' => 'eca', 'ECA232G3461' => 'eca', 'ECA232G3699' => 'eca', 'ECA236G1178' => 'eca', 'ECA238G2799' => 'eca', 'EL10Ac2g02975' => 'bvu', 'EL10Ac4g08579' => 'bvu', 'EL10Ac4g08591' => 'bvu', 'EL10Ac8g19654' => 'bvu', 'Eucgr.E02422' => 'egr', 'Eucgr.I01792' => 'egr', 'Eucgr.I01793' => 'egr', 'Eucgr.I01939' => 'egr', 'FAN01G0668' => 'fan', 'FAN02G0043' => 'fan', 'FAN02G3192' => 'fan', 'FAN05G2035' => 'fan', 'FAN05G4619' => 'fan', 'FAN09G1077' => 'fan', 'FAN09G3753' => 'fan', 'FAN11G2893' => 'fan', 'FAN14G0697' => 'fan', 'FAN14G1115' => 'fan', 'FAN14G4111' => 'fan', 'FAN16G1841' => 'fan', 'FAN21G1335' => 'fan', 'FAN25G1463' => 'fan', 'FvH4_3g05290' => 'fve', 'FvH4_3g19500' => 'fve', 'FvH4_6g48710' => 'fve', 'FvH4_6g50760' => 'fve', 'FvH4_6g50761' => 'fve', 'Glyma.05G007200' => 'gma', 'Glyma.05G007402' => 'gma', 'Glyma.13G063400' => 'gma', 'Glyma.13G219400' => 'gma', 'Glyma.15G092800' => 'gma', 'Glyma.19G007800' => 'gma', 'Glyma.19G007900' => 'gma', 'Gohir.A07G220700' => 'ghi', 'Gohir.A09G017000' => 'ghi', 'Gohir.A10G042200' => 'ghi', 'Gohir.A11G067200' => 'ghi', 'Gohir.D07G227400' => 'ghi', 'Gohir.D09G015600' => 'ghi', 'Gohir.D10G043100' => 'ghi', 'Gohir.D11G071100' => 'ghi', 'Gorai.001G262300' => 'gra', 'Gorai.006G017800' => 'gra', 'Gorai.007G076400' => 'gra', 'Gorai.011G045700' => 'gra', 'GSVIVG01004589001' => 'vvi', 'GSVIVG01004602001' => 'vvi', 'GSVIVG01011396001' => 'vvi', 'GSVIVG01021522001' => 'vvi', 'GSVIVG01032469001' => 'vvi', 'GSVIVG01034494001' => 'vvi', 'HanXRQChr04g0115731' => 'han', 'HanXRQChr06g0175561' => 'han', 'HanXRQChr07g0198751' => 'han', 'HanXRQChr09g0265301' => 'han', 'HanXRQChr09g0266161' => 'han', 'HanXRQChr09g0266171' => 'han', 'HanXRQChr14g0444441' => 'han', 'HanXRQChr14g0450311' => 'han', 'HanXRQChr16g0517041' => 'han', 'Haze_05623' => 'cav', 'Haze_05624' => 'cav', 'Haze_14544' => 'cav', 'Haze_14675' => 'cav', 'Haze_14678' => 'cav', 'Haze_23968' => 'cav', 'Haze_26751' => 'cav', 'Haze_27020' => 'cav', 'Haze_27041' => 'cav', 'Hma1.2p1_0449F.1_g155450' => 'hma', 'Hma1.2p1_0449F.1_g155460' => 'hma', 'Hma1.2p1_0858F.1_g229390' => 'hma', 'Hma1.2p1_0993F.1_g245470' => 'hma', 'Hma1.2p1_0993F.1_g245480' => 'hma', 'Hma1.2p1_3249F.1_g334430' => 'hma', 'Hma1.2p1_3249F.1_g334440' => 'hma', 'HPP92_013058' => 'vpl', 'HPP92_015669' => 'vpl', 'HPP92_024321' => 'vpl', 'Hund10304' => 'sun', 'Hund15609' => 'sun', 'Hund15610' => 'sun', 'Hund17819' => 'sun', 'Lalb_Chr06g0175381' => 'lal', 'Lalb_Chr06g0176011' => 'lal', 'Lalb_Chr18g0055331' => 'lal', 'Lalb_Chr21g0319471' => 'lal', 'Lj1g0025125' => 'lja', 'Lj2A320T43' => 'lonja', 'Lj2g0001312' => 'lja', 'Lj2g0005159' => 'lja', 'Lj2g0012499' => 'lja', 'Lj2g0020540' => 'lja', 'Lj4g0023374' => 'lja', 'Lj6g0000691' => 'lja', 'Lj6g0012679' => 'lja', 'Lj6g0025469' => 'lja', 'Lj7A592T40' => 'lonja', 'Lj7C592G4' => 'lonja', 'Lju41A18T45' => 'lonja', 'Lsat_1_v5_gn_2_92021' => 'lsa', 'Lsat_1_v5_gn_4_178361' => 'lsa', 'Lsat_1_v5_gn_4_182480' => 'lsa', 'Lsat_1_v5_gn_4_182500' => 'lsa', 'Lsat_1_v5_gn_7_27640' => 'lsa', 'Manes.01G090200' => 'mes', 'Manes.15G167800' => 'mes', 'Manes.17G072000' => 'mes', 'Manes.17G116900' => 'mes', 'Manes.17G117000' => 'mes', 'Mapoly0003s0078' => 'mpo', 'MBI02_g24293_MAGBIO' => 'mbi', 'MBI02_g33229_MAGBIO' => 'mbi', 'MBI02_g43974_MAGBIO' => 'mbi', 'MBI02_g46874_MAGBIO' => 'mbi', 'MBI05_g22327_MAGBIO' => 'mbi', 'MBI05_g37763_MAGBIO' => 'mbi', 'MBI16_g05636_MAGBIO' => 'mbi', 'MCO04G080' => 'mco', 'MCO08G001' => 'mco', 'MCO10G250' => 'mco', 'MCO12G116' => 'mco', 'MCO16G488' => 'mco', 'MD05G1281600' => 'mdo', 'MD09G1032500' => 'mdo', 'MD09G1032600' => 'mdo', 'MD09G1050500' => 'mdo', 'MD17G1034100' => 'mdo', 'MD17G1034200' => 'mdo', 'Medtr2g019140' => 'mtr', 'Medtr6g007020' => 'mtr', 'Medtr6g007030' => 'mtr', 'Medtr6g007040' => 'mtr', 'Medtr6g007060' => 'mtr', 'Medtr6g011810' => 'mtr', 'MELO3C002750.2' => 'cme', 'MELO3C021546.2' => 'cme', 'MELO3C021547.2' => 'cme', 'MELO3C021985.2' => 'cme', 'Migut.H00115' => 'egut', 'Migut.H00917' => 'egut', 'Migut.K01371' => 'egut', 'Migut.M00896' => 'egut', 'MSTRG.15512' => 'ama', 'MSTRG.15513' => 'ama', 'MSTRG.23943' => 'ama', 'MSTRG.24019' => 'ama', 'MSTRG.3298' => 'ama', 'Nitab4.5_0000274g0150' => 'nta', 'Nitab4.5_0000833g0070' => 'nta', 'Nitab4.5_0001125g0070' => 'nta', 'Nitab4.5_0001709g0040' => 'nta', 'Nitab4.5_0002298g0090' => 'nta', 'Nitab4.5_0003337g0020' => 'nta', 'Nitab4.5_0006665g0010' => 'nta', 'Nitab4.5_0009022g0010' => 'nta', 'Nn4g22776' => 'nnu', 'Nn4g23147' => 'nnu', 'Nn4g26599' => 'nnu', 'Oeu030938.1' => 'oeu', 'Oeu043054.1' => 'oeu', 'Oeu062114.1' => 'oeu', 'Oeu062922.1' => 'oeu', 'Os04g0459900' => 'osa', 'Os05g0568900' => 'osa', 'Os05g0577800' => 'osa', 'Os05g0577900' => 'osa', 'Os12g0616600' => 'osa', 'Peaxi162Scf00129g01121' => 'pax', 'Peaxi162Scf00317g00115' => 'pax', 'Peaxi162Scf00777g00053' => 'pax', 'Peaxi162Scf00933g00005' => 'pax', 'PGR031G0308' => 'pgr', 'PGR142G0881' => 'pgr', 'PGR142G3003' => 'pgr', 'PGR142G3635' => 'pgr', 'PGSC0003DMG400000494' => 'stu', 'PGSC0003DMG400006931' => 'stu', 'PGSC0003DMG400006955' => 'stu', 'PGSC0003DMG400029873' => 'stu', 'Phvul.004G013600' => 'pvu', 'Phvul.004G013700' => 'pvu', 'Phvul.004G028200' => 'pvu', 'Phvul.006G166100' => 'pvu', 'Potri.001G348700' => 'ptr', 'Potri.001G348800' => 'ptr', 'Potri.004G065600' => 'ptr', 'Potri.004G129200' => 'ptr', 'Potri.011G083300' => 'ptr', 'Pp3c11_23840' => 'ppa', 'Pp3c14_9200' => 'ppa', 'Pp3c1_16510' => 'ppa', 'Pp3c1_26730' => 'ppa', 'Pp3c20_2930' => 'ppa', 'Pp3c25_9610' => 'ppa', 'Pp3c3_32970' => 'ppa', 'Pp3c4_1870' => 'ppa', 'Pp3s30_1210' => 'ppa', 'PRCOL_00000041' => 'pco', 'PRCOL_00000212' => 'pco', 'PRCOL_00004402' => 'pco', 'Prupe.3G268300' => 'ppe', 'Prupe.3G285400' => 'ppe', 'Prupe.3G285500' => 'ppe', 'Prupe.4G083000' => 'ppe', 'Prupe.8G052500' => 'ppe', 'Psat0s3401g0080' => 'psa', 'Psat1g057120' => 'psa', 'Psat1g057160' => 'psa', 'Psat1g074480' => 'psa', 'Psat1g191040' => 'psa', 'Psat1g219520' => 'psa', 'PSO017G2653' => 'pso', 'PSO017G2683' => 'pso', 'PSO017G3520' => 'pso', 'PSO017G4909' => 'pso', 'PSO017G5739' => 'pso', 'PSO017G6424' => 'pso', 'PSO170G6906' => 'pso', 'PSO323G0001' => 'pso', 'PSO396G0001' => 'pso', 'PSO478G2102' => 'pso', 'PSO478G3469' => 'pso', 'PSO478G5059' => 'pso', 'PSO500G0136' => 'pso', 'PSO675G4930' => 'pso', 'PSO706G0006' => 'pso', 'PSO706G0012' => 'pso', 'PSO706G0014' => 'pso', 'PSO761G0233' => 'pso', 'QL02p076341' => 'qlo', 'QL02p076349' => 'qlo', 'QL02p081685' => 'qlo', 'QL05p056041' => 'qlo', 'QL05p057103' => 'qlo', 'QL05p057213' => 'qlo', 'QL05p057244' => 'qlo', 'QL05p057250' => 'qlo', 'QL09p015613' => 'qlo', 'RcHm_v2.0_Chr2g0168631' => 'rch', 'RcHm_v2.0_Chr2g0171701' => 'rch', 'RcHm_v2.0_Chr2g0171711' => 'rch', 'RcHm_v2.0_Chr5g0014431' => 'rch', 'Rhsim08G0054100' => 'rsi', 'Rhsim10G0021400' => 'rsi', 'Rhsim10G0021500' => 'rsi', 'Rhsim10G0040000' => 'rsi', 'Rhsim13G0115200' => 'rsi', 'Sabra04G0088900' => 'sbr', 'Sabra11G0066300' => 'sbr', 'Sabra16G0228300' => 'sbr', 'SalBow1G5303' => 'sbo', 'SalBow1G7722' => 'sbo', 'SalBow7G2409' => 'sbo', 'SalBow8G4304' => 'sbo', 'Sc03g0007930' => 'sci', 'Sc14g0005940' => 'sci', 'Sc16g0003610' => 'sci', 'Sc24g0001720' => 'sci', 'Sed0005946' => 'sed', 'Sed0007195' => 'sed', 'Sed0007586' => 'sed', 'Sed0026124' => 'sed', 'SEGI_03269' => 'sgi', 'SEGI_07909' => 'sgi', 'SEGI_12261' => 'sgi', 'SEGI_13753' => 'sgi', 'SEGI_15197' => 'sgi', 'SEGI_18628' => 'sgi', 'SEGI_26747' => 'sgi', 'SEGI_37884' => 'sgi', 'SGA_v2.0_scaffold135G34875' => 'sas', 'SGA_v2.0_scaffold1G00192' => 'sas', 'SGA_v2.0_scaffold30G12466' => 'sas', 'SGA_v2.0_scaffold59G20688' => 'sas', 'SMO134G0095' => 'smo', 'SMO145G0086' => 'smo', 'SMO171G0065' => 'smo', 'SMO351G0147' => 'smo', 'SMO361G0158' => 'smo', 'Solyc02g067360.3' => 'sly', 'Solyc02g067740.4' => 'sly', 'Solyc02g086830.3' => 'sly', 'Solyc08g048550.3' => 'sly', 'Sopen02g016500' => 'spe', 'Sopen02g016860' => 'spe', 'Sopen02g031600' => 'spe', 'Sopen07g006450' => 'spe', 'Sopen08g010960' => 'spe', 'Sp2g16970' => 'spa', 'Sp2g16980' => 'spa', 'Sp7g02240' => 'spa', 'Sp7g15700' => 'spa', 'TAR371G0404' => 'tar', 'TAR374G1405' => 'tar', 'TAR627G0692' => 'tar', 'TAR629G1635' => 'tar', 'TAR629G2625' => 'tar', 'THA.LOC104805392' => 'tha', 'THA.LOC104812860' => 'tha', 'THA.LOC104823191' => 'tha', 'THA.LOC104825337' => 'tha', 'Thecc.04G010000' => 'tca', 'Thecc.04G010100' => 'tca', 'Thecc.04G080500' => 'tca', 'Thecc.04G111800' => 'tca', 'Thecc.05G252100' => 'tca', 'Thecc.06G148200' => 'tca', 'Thhalv10004246m.g' => 'esa', 'Thhalv10004293m.g' => 'esa', 'Thhalv10025708m.g' => 'esa', 'Thhalv10027761m.g' => 'esa', 'TPR.G18830' => 'tpr', 'TPR.G20351' => 'tpr', 'TPR.G21391' => 'tpr', 'TPR.G2265' => 'tpr', 'TPR.G2270' => 'tpr', 'TPR.G26235' => 'tpr', 'TPR.G27993' => 'tpr', 'TWI12G0063' => 'twi', 'TWI32G0041' => 'twi', 'TWI53G0561' => 'twi', 'TWI56G1008' => 'twi', 'unitig_32.g10673' => 'ugi', 'unitig_748.g7673' => 'ugi', 'unitig_88.g27778' => 'ugi', 'unitig_899.g15516' => 'ugi', 'vmacro03335' => 'vma', 'vmacro05702' => 'vma', 'vmacro05831' => 'vma', 'vmacro05832' => 'vma', 'vmacro18250' => 'vma', 'vmacro18251' => 'vma', 'vmacro18252' => 'vma', 'vmacro23476' => 'vma', 'VMungo0464G0407' => 'vmu', 'VMungo0464G1062' => 'vmu', 'VMungo0464G2191' => 'vmu', 'VMungo0540G2226' => 'vmu', 'Zm00001eb023990' => 'zma', 'Zm00001eb031870' => 'zma', 'Zm00001eb080810' => 'zma', 'Zm00001eb296290' => 'zma', 'Zm00001eb313910' => 'zma', 'Zm00001eb339680' => 'zma', 'Zm00001eb344110' => 'zma', 'Zm00001eb344500' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001104', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001104' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001104', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '555', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001104' ) ), 'genes' => array( 'A01p10280' => 'bna', 'A02p35680' => 'bna', 'A04p12530' => 'bna', 'A06p40770' => 'bna', 'A06p40780' => 'bna', 'A06p40790' => 'bna', 'A07p28190' => 'bna', 'Aa31LG2G4840' => 'aar', 'Aa31LG6G1070' => 'aar', 'Aa31LG9G16340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.423' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.221' => 'aag', 'Actinidia06020' => 'ach', 'Actinidia06087' => 'ach', 'Actinidia16934' => 'ach', 'Actinidia33715' => 'ach', 'Actinidia35743' => 'ach', 'Actinidia35744' => 'ach', 'Actinidia36089' => 'ach', 'Ah.06g187130' => 'amhyb', 'Ah.07g199000' => 'amhyb', 'Ah.14g086390' => 'amhyb', 'AL1G21640' => 'aly', 'AL5G17420' => 'aly', 'AL5G17430' => 'aly', 'AL7G36010' => 'aly', 'AL7G50410' => 'aly', 'Aqoxy3G00645' => 'aox', 'Aqoxy3G01030' => 'aox', 'Aqoxy3G01031' => 'aox', 'Aqoxy3G02957' => 'aox', 'Aqoxy4G00068' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E40C5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VZU0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M213TK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2U024' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA6DSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHR6Q8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLD0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5BZSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE11WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNKJ1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5509F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZA2NY6' => 'arhy', 'AT3G27925' => 'ath', 'AT3G27930' => 'ath', 'AT4G18370' => 'ath', 'AT5G39830' => 'ath', 'ATR0564G198' => 'atr', 'ATR0730G028' => 'atr', 'ATR0730G148' => 'atr', 'ATR1098G116' => 'atr', 'Atru.chr10.1174' => 'acertr', 'Atru.chr6.2305' => 'acertr', 'Atru.chr6.2306' => 'acertr', 'Atru.chr8.144' => 'acertr', 'AUR62002715' => 'cqu', 'AUR62029365' => 'cqu', 'AUR62030175' => 'cqu', 'AUR62034399' => 'cqu', 'AUR62034754' => 'cqu', 'AUR62039816' => 'cqu', 'AUR62043056' => 'cqu', 'AUR62043218' => 'cqu', 'BcaB06g27379' => 'bca', 'BcaB07g30139' => 'bca', 'BcaC01g03604' => 'bca', 'BcaC02g08313' => 'bca', 'BcaC03g17495' => 'bca', 'BcaC04g21585' => 'bca', 'BcaC06g30950' => 'bca', 'BcaC06g30951' => 'bca', 'BcaC06g33770' => 'bca', 'BcaC06g33771' => 'bca', 'BcaC07g41832' => 'bca', 'BcaC09g51528' => 'bca', 'BcaNung00010' => 'bca', 'BolC1t01199H' => 'bol', 'BolC2t11515H' => 'bol', 'BolC2t11520H' => 'bol', 'BolC4t26211H' => 'bol', 'BolC4t27122H' => 'bol', 'BolC7t44223H' => 'bol', 'BolC7t44224H' => 'bol', 'BraA01t00975Z' => 'bra', 'BraA02t08570Z' => 'bra', 'BraA02t08571Z' => 'bra', 'BraA04t16914Z' => 'bra', 'BraA06t26998Z' => 'bra', 'BraA06t26999Z' => 'bra', 'C01p12230' => 'bna', 'C02p45330' => 'bna', 'C02p54520' => 'bna', 'C02p54570' => 'bna', 'C04p46270' => 'bna', 'C07p37120' => 'bna', 'C07p37130' => 'bna', 'C08p49060' => 'bna', 'CAN.G1145.1' => 'can', 'CAN.G1275.4' => 'can', 'CAN.G206.27' => 'can', 'CAN.G685.22' => 'can', 'CAN.G973.9' => 'can', 'CANSAT35G0592' => 'cansat', 'CANSAT64G0855' => 'cansat', 'CANSAT64G1134' => 'cansat', 'CANSAT64G2394' => 'cansat', 'CANSAT64G2658' => 'cansat', 'CARHR149490' => 'chi', 'CARHR149500' => 'chi', 'CARHR225140' => 'chi', 'CARHR262400' => 'chi', 'Carub.0005s0649' => 'cru', 'Carub.0005s0650' => 'cru', 'Carub.0007s2292' => 'cru', 'Carub.0007s3590' => 'cru', 'Ca_00531_v3' => 'car', 'Ca_04192_v3' => 'car', 'Ca_04279_v3' => 'car', 'Ca_26507_v3' => 'car', 'Ca_29015_v3' => 'car', 'CBR_g12057' => 'cbr', 'CBR_g19701' => 'cbr', 'CBR_g37528' => 'cbr', 'CBR_g50353' => 'cbr', 'CBR_g8333' => 'cbr', 'Cc07_g02170' => 'ccan', 'Cc07_g02180' => 'ccan', 'Cc07_g03310' => 'ccan', 'Cc11_g03520' => 'ccan', 'CDE02G2406' => 'cde', 'CDE02G4088' => 'cde', 'CDE04G3157' => 'cde', 'CDE05G3320' => 'cde', 'CDE06G1047' => 'cde', 'CDE06G1079' => 'cde', 'CDE06G1183' => 'cde', 'CDE06G2339' => 'cde', 'CDE06G2743' => 'cde', 'Cfa007422' => 'cfa', 'Cfa007542' => 'cfa', 'Cfa008566' => 'cfa', 'Cfa008567' => 'cfa', 'Ciclev10012082m.g' => 'ccl', 'Ciclev10015214m.g' => 'ccl', 'Ciclev10015353m.g' => 'ccl', 'Ciclev10016002m.g' => 'ccl', 'Ciclev10020491m.g' => 'ccl', 'CiPaw.03G027600' => 'cil', 'CiPaw.03G038600' => 'cil', 'CiPaw.03G038700' => 'cil', 'CiPaw.04G025200' => 'cil', 'CiPaw.10G090500' => 'cil', 'ClCG03G006710' => 'cla', 'ClCG09G018300' => 'cla', 'ClCG09G018970' => 'cla', 'ClCG09G018980' => 'cla', 'COL.COLO4_26643' => 'col', 'COL.COLO4_28978' => 'col', 'COL.COLO4_28980' => 'col', 'Cpa.g.sc14.5' => 'cpa', 'Cpa.g.sc17.5' => 'cpa', 'Cpa.g.sc215.8' => 'cpa', 'Cpa.g.sc215.9' => 'cpa', 'Cre01.g028350' => 'cre', 'Cre02.g088400' => 'cre', 'Cre02.g110600' => 'cre', 'Cre08.g358552' => 'cre', 'Cre12.g498500' => 'cre', 'Cre14.g630550' => 'cre', 'CsaV3_1G004620' => 'csa', 'CsaV3_5G024410' => 'csa', 'CsaV3_5G027370' => 'csa', 'CsaV3_5G027380' => 'csa', 'CsaV3_5G037980' => 'csa', 'CSS0012459' => 'camsi', 'CSS0014255' => 'camsi', 'CSS0016338' => 'camsi', 'CSS0024274' => 'camsi', 'CSS0024841' => 'camsi', 'CSS0033406' => 'camsi', 'CSS0039746' => 'camsi', 'CSS0046912' => 'camsi', 'DCAR_003899' => 'dca', 'DCAR_011134' => 'dca', 'DCAR_011201' => 'dca', 'DCAR_015045' => 'dca', 'DCAR_021687' => 'dca', 'Dinv06541' => 'din', 'Dinv32236' => 'din', 'Dinv33487' => 'din', 'Dinv35069' => 'din', 'Dinv35070' => 'din', 'Duzib133G1354' => 'dzi', 'Duzib147G0036' => 'dzi', 'Duzib147G0686' => 'dzi', 'Duzib147G1230' => 'dzi', 'Duzib235G0771' => 'dzi', 'Duzib264G0237' => 'dzi', 'ECA232G2826' => 'eca', 'ECA232G3461' => 'eca', 'ECA232G3699' => 'eca', 'ECA236G1178' => 'eca', 'ECA238G2799' => 'eca', 'EL10Ac2g02975' => 'bvu', 'EL10Ac4g08579' => 'bvu', 'EL10Ac4g08591' => 'bvu', 'EL10Ac8g19654' => 'bvu', 'Eucgr.E02422' => 'egr', 'Eucgr.I01792' => 'egr', 'Eucgr.I01793' => 'egr', 'Eucgr.I01939' => 'egr', 'FAN01G0668' => 'fan', 'FAN02G0043' => 'fan', 'FAN02G3192' => 'fan', 'FAN05G2035' => 'fan', 'FAN05G4619' => 'fan', 'FAN09G1077' => 'fan', 'FAN09G3753' => 'fan', 'FAN11G2893' => 'fan', 'FAN14G0697' => 'fan', 'FAN14G1115' => 'fan', 'FAN14G4111' => 'fan', 'FAN16G1841' => 'fan', 'FAN21G1335' => 'fan', 'FAN25G1463' => 'fan', 'FvH4_3g05290' => 'fve', 'FvH4_3g19500' => 'fve', 'FvH4_6g48710' => 'fve', 'FvH4_6g50760' => 'fve', 'FvH4_6g50761' => 'fve', 'Glyma.05G007200' => 'gma', 'Glyma.05G007402' => 'gma', 'Glyma.13G063400' => 'gma', 'Glyma.13G219400' => 'gma', 'Glyma.15G092800' => 'gma', 'Glyma.19G007800' => 'gma', 'Glyma.19G007900' => 'gma', 'Gohir.A07G220700' => 'ghi', 'Gohir.A09G017000' => 'ghi', 'Gohir.A10G042200' => 'ghi', 'Gohir.A11G067200' => 'ghi', 'Gohir.D07G227400' => 'ghi', 'Gohir.D09G015600' => 'ghi', 'Gohir.D10G043100' => 'ghi', 'Gohir.D11G071100' => 'ghi', 'Gorai.001G262300' => 'gra', 'Gorai.006G017800' => 'gra', 'Gorai.007G076400' => 'gra', 'Gorai.011G045700' => 'gra', 'GSVIVG01004589001' => 'vvi', 'GSVIVG01004602001' => 'vvi', 'GSVIVG01011396001' => 'vvi', 'GSVIVG01021522001' => 'vvi', 'GSVIVG01032469001' => 'vvi', 'GSVIVG01034494001' => 'vvi', 'HanXRQChr04g0115731' => 'han', 'HanXRQChr06g0175561' => 'han', 'HanXRQChr07g0198751' => 'han', 'HanXRQChr09g0265301' => 'han', 'HanXRQChr09g0266161' => 'han', 'HanXRQChr09g0266171' => 'han', 'HanXRQChr14g0444441' => 'han', 'HanXRQChr14g0450311' => 'han', 'HanXRQChr16g0517041' => 'han', 'Haze_05623' => 'cav', 'Haze_05624' => 'cav', 'Haze_14544' => 'cav', 'Haze_14675' => 'cav', 'Haze_14678' => 'cav', 'Haze_23968' => 'cav', 'Haze_26751' => 'cav', 'Haze_27020' => 'cav', 'Haze_27041' => 'cav', 'Hma1.2p1_0449F.1_g155450' => 'hma', 'Hma1.2p1_0449F.1_g155460' => 'hma', 'Hma1.2p1_0858F.1_g229390' => 'hma', 'Hma1.2p1_0993F.1_g245470' => 'hma', 'Hma1.2p1_0993F.1_g245480' => 'hma', 'Hma1.2p1_3249F.1_g334430' => 'hma', 'Hma1.2p1_3249F.1_g334440' => 'hma', 'HPP92_013058' => 'vpl', 'HPP92_015669' => 'vpl', 'HPP92_024321' => 'vpl', 'Hund10304' => 'sun', 'Hund15609' => 'sun', 'Hund15610' => 'sun', 'Hund17819' => 'sun', 'Lalb_Chr06g0175381' => 'lal', 'Lalb_Chr06g0176011' => 'lal', 'Lalb_Chr18g0055331' => 'lal', 'Lalb_Chr21g0319471' => 'lal', 'Lj1g0025125' => 'lja', 'Lj2A320T43' => 'lonja', 'Lj2g0001312' => 'lja', 'Lj2g0005159' => 'lja', 'Lj2g0012499' => 'lja', 'Lj2g0020540' => 'lja', 'Lj4g0023374' => 'lja', 'Lj6g0000691' => 'lja', 'Lj6g0012679' => 'lja', 'Lj6g0025469' => 'lja', 'Lj7A592T40' => 'lonja', 'Lj7C592G4' => 'lonja', 'Lju41A18T45' => 'lonja', 'Lsat_1_v5_gn_2_92021' => 'lsa', 'Lsat_1_v5_gn_4_178361' => 'lsa', 'Lsat_1_v5_gn_4_182480' => 'lsa', 'Lsat_1_v5_gn_4_182500' => 'lsa', 'Lsat_1_v5_gn_7_27640' => 'lsa', 'Manes.01G090200' => 'mes', 'Manes.15G167800' => 'mes', 'Manes.17G072000' => 'mes', 'Manes.17G116900' => 'mes', 'Manes.17G117000' => 'mes', 'Mapoly0003s0078' => 'mpo', 'MBI02_g24293_MAGBIO' => 'mbi', 'MBI02_g33229_MAGBIO' => 'mbi', 'MBI02_g43974_MAGBIO' => 'mbi', 'MBI02_g46874_MAGBIO' => 'mbi', 'MBI05_g22327_MAGBIO' => 'mbi', 'MBI05_g37763_MAGBIO' => 'mbi', 'MBI16_g05636_MAGBIO' => 'mbi', 'MCO04G080' => 'mco', 'MCO08G001' => 'mco', 'MCO10G250' => 'mco', 'MCO12G116' => 'mco', 'MCO16G488' => 'mco', 'MD05G1281600' => 'mdo', 'MD09G1032500' => 'mdo', 'MD09G1032600' => 'mdo', 'MD09G1050500' => 'mdo', 'MD17G1034100' => 'mdo', 'MD17G1034200' => 'mdo', 'Medtr2g019140' => 'mtr', 'Medtr6g007020' => 'mtr', 'Medtr6g007030' => 'mtr', 'Medtr6g007040' => 'mtr', 'Medtr6g007060' => 'mtr', 'Medtr6g011810' => 'mtr', 'MELO3C002750.2' => 'cme', 'MELO3C021546.2' => 'cme', 'MELO3C021547.2' => 'cme', 'MELO3C021985.2' => 'cme', 'Migut.H00115' => 'egut', 'Migut.H00917' => 'egut', 'Migut.K01371' => 'egut', 'Migut.M00896' => 'egut', 'MSTRG.15512' => 'ama', 'MSTRG.15513' => 'ama', 'MSTRG.23943' => 'ama', 'MSTRG.24019' => 'ama', 'MSTRG.3298' => 'ama', 'Nitab4.5_0000274g0150' => 'nta', 'Nitab4.5_0000833g0070' => 'nta', 'Nitab4.5_0001125g0070' => 'nta', 'Nitab4.5_0001709g0040' => 'nta', 'Nitab4.5_0002298g0090' => 'nta', 'Nitab4.5_0003337g0020' => 'nta', 'Nitab4.5_0006665g0010' => 'nta', 'Nitab4.5_0009022g0010' => 'nta', 'Nn4g22776' => 'nnu', 'Nn4g23147' => 'nnu', 'Nn4g26599' => 'nnu', 'Oeu030938.1' => 'oeu', 'Oeu043054.1' => 'oeu', 'Oeu062114.1' => 'oeu', 'Oeu062922.1' => 'oeu', 'Os04g0459900' => 'osa', 'Os05g0568900' => 'osa', 'Os05g0577800' => 'osa', 'Os05g0577900' => 'osa', 'Os12g0616600' => 'osa', 'Peaxi162Scf00129g01121' => 'pax', 'Peaxi162Scf00317g00115' => 'pax', 'Peaxi162Scf00777g00053' => 'pax', 'Peaxi162Scf00933g00005' => 'pax', 'PGR031G0308' => 'pgr', 'PGR142G0881' => 'pgr', 'PGR142G3003' => 'pgr', 'PGR142G3635' => 'pgr', 'PGSC0003DMG400000494' => 'stu', 'PGSC0003DMG400006931' => 'stu', 'PGSC0003DMG400006955' => 'stu', 'PGSC0003DMG400029873' => 'stu', 'Phvul.004G013600' => 'pvu', 'Phvul.004G013700' => 'pvu', 'Phvul.004G028200' => 'pvu', 'Phvul.006G166100' => 'pvu', 'Potri.001G348700' => 'ptr', 'Potri.001G348800' => 'ptr', 'Potri.004G065600' => 'ptr', 'Potri.004G129200' => 'ptr', 'Potri.011G083300' => 'ptr', 'Pp3c11_23840' => 'ppa', 'Pp3c14_9200' => 'ppa', 'Pp3c1_16510' => 'ppa', 'Pp3c1_26730' => 'ppa', 'Pp3c20_2930' => 'ppa', 'Pp3c25_9610' => 'ppa', 'Pp3c3_32970' => 'ppa', 'Pp3c4_1870' => 'ppa', 'Pp3s30_1210' => 'ppa', 'PRCOL_00000041' => 'pco', 'PRCOL_00000212' => 'pco', 'PRCOL_00004402' => 'pco', 'Prupe.3G268300' => 'ppe', 'Prupe.3G285400' => 'ppe', 'Prupe.3G285500' => 'ppe', 'Prupe.4G083000' => 'ppe', 'Prupe.8G052500' => 'ppe', 'Psat0s3401g0080' => 'psa', 'Psat1g057120' => 'psa', 'Psat1g057160' => 'psa', 'Psat1g074480' => 'psa', 'Psat1g191040' => 'psa', 'Psat1g219520' => 'psa', 'PSO017G2653' => 'pso', 'PSO017G2683' => 'pso', 'PSO017G3520' => 'pso', 'PSO017G4909' => 'pso', 'PSO017G5739' => 'pso', 'PSO017G6424' => 'pso', 'PSO170G6906' => 'pso', 'PSO323G0001' => 'pso', 'PSO396G0001' => 'pso', 'PSO478G2102' => 'pso', 'PSO478G3469' => 'pso', 'PSO478G5059' => 'pso', 'PSO500G0136' => 'pso', 'PSO675G4930' => 'pso', 'PSO706G0006' => 'pso', 'PSO706G0012' => 'pso', 'PSO706G0014' => 'pso', 'PSO761G0233' => 'pso', 'QL02p076341' => 'qlo', 'QL02p076349' => 'qlo', 'QL02p081685' => 'qlo', 'QL05p056041' => 'qlo', 'QL05p057103' => 'qlo', 'QL05p057213' => 'qlo', 'QL05p057244' => 'qlo', 'QL05p057250' => 'qlo', 'QL09p015613' => 'qlo', 'RcHm_v2.0_Chr2g0168631' => 'rch', 'RcHm_v2.0_Chr2g0171701' => 'rch', 'RcHm_v2.0_Chr2g0171711' => 'rch', 'RcHm_v2.0_Chr5g0014431' => 'rch', 'Rhsim08G0054100' => 'rsi', 'Rhsim10G0021400' => 'rsi', 'Rhsim10G0021500' => 'rsi', 'Rhsim10G0040000' => 'rsi', 'Rhsim13G0115200' => 'rsi', 'Sabra04G0088900' => 'sbr', 'Sabra11G0066300' => 'sbr', 'Sabra16G0228300' => 'sbr', 'SalBow1G5303' => 'sbo', 'SalBow1G7722' => 'sbo', 'SalBow7G2409' => 'sbo', 'SalBow8G4304' => 'sbo', 'Sc03g0007930' => 'sci', 'Sc14g0005940' => 'sci', 'Sc16g0003610' => 'sci', 'Sc24g0001720' => 'sci', 'Sed0005946' => 'sed', 'Sed0007195' => 'sed', 'Sed0007586' => 'sed', 'Sed0026124' => 'sed', 'SEGI_03269' => 'sgi', 'SEGI_07909' => 'sgi', 'SEGI_12261' => 'sgi', 'SEGI_13753' => 'sgi', 'SEGI_15197' => 'sgi', 'SEGI_18628' => 'sgi', 'SEGI_26747' => 'sgi', 'SEGI_37884' => 'sgi', 'SGA_v2.0_scaffold135G34875' => 'sas', 'SGA_v2.0_scaffold1G00192' => 'sas', 'SGA_v2.0_scaffold30G12466' => 'sas', 'SGA_v2.0_scaffold59G20688' => 'sas', 'SMO134G0095' => 'smo', 'SMO145G0086' => 'smo', 'SMO171G0065' => 'smo', 'SMO351G0147' => 'smo', 'SMO361G0158' => 'smo', 'Solyc02g067360.3' => 'sly', 'Solyc02g067740.4' => 'sly', 'Solyc02g086830.3' => 'sly', 'Solyc08g048550.3' => 'sly', 'Sopen02g016500' => 'spe', 'Sopen02g016860' => 'spe', 'Sopen02g031600' => 'spe', 'Sopen07g006450' => 'spe', 'Sopen08g010960' => 'spe', 'Sp2g16970' => 'spa', 'Sp2g16980' => 'spa', 'Sp7g02240' => 'spa', 'Sp7g15700' => 'spa', 'TAR371G0404' => 'tar', 'TAR374G1405' => 'tar', 'TAR627G0692' => 'tar', 'TAR629G1635' => 'tar', 'TAR629G2625' => 'tar', 'THA.LOC104805392' => 'tha', 'THA.LOC104812860' => 'tha', 'THA.LOC104823191' => 'tha', 'THA.LOC104825337' => 'tha', 'Thecc.04G010000' => 'tca', 'Thecc.04G010100' => 'tca', 'Thecc.04G080500' => 'tca', 'Thecc.04G111800' => 'tca', 'Thecc.05G252100' => 'tca', 'Thecc.06G148200' => 'tca', 'Thhalv10004246m.g' => 'esa', 'Thhalv10004293m.g' => 'esa', 'Thhalv10025708m.g' => 'esa', 'Thhalv10027761m.g' => 'esa', 'TPR.G18830' => 'tpr', 'TPR.G20351' => 'tpr', 'TPR.G21391' => 'tpr', 'TPR.G2265' => 'tpr', 'TPR.G2270' => 'tpr', 'TPR.G26235' => 'tpr', 'TPR.G27993' => 'tpr', 'TWI12G0063' => 'twi', 'TWI32G0041' => 'twi', 'TWI53G0561' => 'twi', 'TWI56G1008' => 'twi', 'unitig_32.g10673' => 'ugi', 'unitig_748.g7673' => 'ugi', 'unitig_88.g27778' => 'ugi', 'unitig_899.g15516' => 'ugi', 'vmacro03335' => 'vma', 'vmacro05702' => 'vma', 'vmacro05831' => 'vma', 'vmacro05832' => 'vma', 'vmacro18250' => 'vma', 'vmacro18251' => 'vma', 'vmacro18252' => 'vma', 'vmacro23476' => 'vma', 'VMungo0464G0407' => 'vmu', 'VMungo0464G1062' => 'vmu', 'VMungo0464G2191' => 'vmu', 'VMungo0540G2226' => 'vmu', 'Zm00001eb023990' => 'zma', 'Zm00001eb031870' => 'zma', 'Zm00001eb080810' => 'zma', 'Zm00001eb296290' => 'zma', 'Zm00001eb313910' => 'zma', 'Zm00001eb339680' => 'zma', 'Zm00001eb344110' => 'zma', 'Zm00001eb344500' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001104' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001104' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001104' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001104' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001104', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '555', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p10280' => 'bna', 'A02p35680' => 'bna', 'A04p12530' => 'bna', 'A06p40770' => 'bna', 'A06p40780' => 'bna', 'A06p40790' => 'bna', 'A07p28190' => 'bna', 'Aa31LG2G4840' => 'aar', 'Aa31LG6G1070' => 'aar', 'Aa31LG9G16340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.423' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.221' => 'aag', 'Actinidia06020' => 'ach', 'Actinidia06087' => 'ach', 'Actinidia16934' => 'ach', 'Actinidia33715' => 'ach', 'Actinidia35743' => 'ach', 'Actinidia35744' => 'ach', 'Actinidia36089' => 'ach', 'Ah.06g187130' => 'amhyb', 'Ah.07g199000' => 'amhyb', 'Ah.14g086390' => 'amhyb', 'AL1G21640' => 'aly', 'AL5G17420' => 'aly', 'AL5G17430' => 'aly', 'AL7G36010' => 'aly', 'AL7G50410' => 'aly', 'Aqoxy3G00645' => 'aox', 'Aqoxy3G01030' => 'aox', 'Aqoxy3G01031' => 'aox', 'Aqoxy3G02957' => 'aox', 'Aqoxy4G00068' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E40C5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VZU0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M213TK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2U024' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA6DSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHR6Q8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLD0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5BZSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE11WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNKJ1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5509F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZA2NY6' => 'arhy', 'AT3G27925' => 'ath', 'AT3G27930' => 'ath', 'AT4G18370' => 'ath', 'AT5G39830' => 'ath', 'ATR0564G198' => 'atr', 'ATR0730G028' => 'atr', 'ATR0730G148' => 'atr', 'ATR1098G116' => 'atr', 'Atru.chr10.1174' => 'acertr', 'Atru.chr6.2305' => 'acertr', 'Atru.chr6.2306' => 'acertr', 'Atru.chr8.144' => 'acertr', 'AUR62002715' => 'cqu', 'AUR62029365' => 'cqu', 'AUR62030175' => 'cqu', 'AUR62034399' => 'cqu', 'AUR62034754' => 'cqu', 'AUR62039816' => 'cqu', 'AUR62043056' => 'cqu', 'AUR62043218' => 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'CANSAT64G0855' => 'cansat', 'CANSAT64G1134' => 'cansat', 'CANSAT64G2394' => 'cansat', 'CANSAT64G2658' => 'cansat', 'CARHR149490' => 'chi', 'CARHR149500' => 'chi', 'CARHR225140' => 'chi', 'CARHR262400' => 'chi', 'Carub.0005s0649' => 'cru', 'Carub.0005s0650' => 'cru', 'Carub.0007s2292' => 'cru', 'Carub.0007s3590' => 'cru', 'Ca_00531_v3' => 'car', 'Ca_04192_v3' => 'car', 'Ca_04279_v3' => 'car', 'Ca_26507_v3' => 'car', 'Ca_29015_v3' => 'car', 'CBR_g12057' => 'cbr', 'CBR_g19701' => 'cbr', 'CBR_g37528' => 'cbr', 'CBR_g50353' => 'cbr', 'CBR_g8333' => 'cbr', 'Cc07_g02170' => 'ccan', 'Cc07_g02180' => 'ccan', 'Cc07_g03310' => 'ccan', 'Cc11_g03520' => 'ccan', 'CDE02G2406' => 'cde', 'CDE02G4088' => 'cde', 'CDE04G3157' => 'cde', 'CDE05G3320' => 'cde', 'CDE06G1047' => 'cde', 'CDE06G1079' => 'cde', 'CDE06G1183' => 'cde', 'CDE06G2339' => 'cde', 'CDE06G2743' => 'cde', 'Cfa007422' => 'cfa', 'Cfa007542' => 'cfa', 'Cfa008566' => 'cfa', 'Cfa008567' => 'cfa', 'Ciclev10012082m.g' => 'ccl', 'Ciclev10015214m.g' => 'ccl', 'Ciclev10015353m.g' => 'ccl', 'Ciclev10016002m.g' => 'ccl', 'Ciclev10020491m.g' => 'ccl', 'CiPaw.03G027600' => 'cil', 'CiPaw.03G038600' => 'cil', 'CiPaw.03G038700' => 'cil', 'CiPaw.04G025200' => 'cil', 'CiPaw.10G090500' => 'cil', 'ClCG03G006710' => 'cla', 'ClCG09G018300' => 'cla', 'ClCG09G018970' => 'cla', 'ClCG09G018980' => 'cla', 'COL.COLO4_26643' => 'col', 'COL.COLO4_28978' => 'col', 'COL.COLO4_28980' => 'col', 'Cpa.g.sc14.5' => 'cpa', 'Cpa.g.sc17.5' => 'cpa', 'Cpa.g.sc215.8' => 'cpa', 'Cpa.g.sc215.9' => 'cpa', 'Cre01.g028350' => 'cre', 'Cre02.g088400' => 'cre', 'Cre02.g110600' => 'cre', 'Cre08.g358552' => 'cre', 'Cre12.g498500' => 'cre', 'Cre14.g630550' => 'cre', 'CsaV3_1G004620' => 'csa', 'CsaV3_5G024410' => 'csa', 'CsaV3_5G027370' => 'csa', 'CsaV3_5G027380' => 'csa', 'CsaV3_5G037980' => 'csa', 'CSS0012459' => 'camsi', 'CSS0014255' => 'camsi', 'CSS0016338' => 'camsi', 'CSS0024274' => 'camsi', 'CSS0024841' => 'camsi', 'CSS0033406' => 'camsi', 'CSS0039746' => 'camsi', 'CSS0046912' => 'camsi', 'DCAR_003899' => 'dca', 'DCAR_011134' => 'dca', 'DCAR_011201' => 'dca', 'DCAR_015045' => 'dca', 'DCAR_021687' => 'dca', 'Dinv06541' => 'din', 'Dinv32236' => 'din', 'Dinv33487' => 'din', 'Dinv35069' => 'din', 'Dinv35070' => 'din', 'Duzib133G1354' => 'dzi', 'Duzib147G0036' => 'dzi', 'Duzib147G0686' => 'dzi', 'Duzib147G1230' => 'dzi', 'Duzib235G0771' => 'dzi', 'Duzib264G0237' => 'dzi', 'ECA232G2826' => 'eca', 'ECA232G3461' => 'eca', 'ECA232G3699' => 'eca', 'ECA236G1178' => 'eca', 'ECA238G2799' => 'eca', 'EL10Ac2g02975' => 'bvu', 'EL10Ac4g08579' => 'bvu', 'EL10Ac4g08591' => 'bvu', 'EL10Ac8g19654' => 'bvu', 'Eucgr.E02422' => 'egr', 'Eucgr.I01792' => 'egr', 'Eucgr.I01793' => 'egr', 'Eucgr.I01939' => 'egr', 'FAN01G0668' => 'fan', 'FAN02G0043' => 'fan', 'FAN02G3192' => 'fan', 'FAN05G2035' => 'fan', 'FAN05G4619' => 'fan', 'FAN09G1077' => 'fan', 'FAN09G3753' => 'fan', 'FAN11G2893' => 'fan', 'FAN14G0697' => 'fan', 'FAN14G1115' => 'fan', 'FAN14G4111' => 'fan', 'FAN16G1841' => 'fan', 'FAN21G1335' => 'fan', 'FAN25G1463' => 'fan', 'FvH4_3g05290' => 'fve', 'FvH4_3g19500' => 'fve', 'FvH4_6g48710' => 'fve', 'FvH4_6g50760' => 'fve', 'FvH4_6g50761' => 'fve', 'Glyma.05G007200' => 'gma', 'Glyma.05G007402' => 'gma', 'Glyma.13G063400' => 'gma', 'Glyma.13G219400' => 'gma', 'Glyma.15G092800' => 'gma', 'Glyma.19G007800' => 'gma', 'Glyma.19G007900' => 'gma', 'Gohir.A07G220700' => 'ghi', 'Gohir.A09G017000' => 'ghi', 'Gohir.A10G042200' => 'ghi', 'Gohir.A11G067200' => 'ghi', 'Gohir.D07G227400' => 'ghi', 'Gohir.D09G015600' => 'ghi', 'Gohir.D10G043100' => 'ghi', 'Gohir.D11G071100' => 'ghi', 'Gorai.001G262300' => 'gra', 'Gorai.006G017800' => 'gra', 'Gorai.007G076400' => 'gra', 'Gorai.011G045700' => 'gra', 'GSVIVG01004589001' => 'vvi', 'GSVIVG01004602001' => 'vvi', 'GSVIVG01011396001' => 'vvi', 'GSVIVG01021522001' => 'vvi', 'GSVIVG01032469001' => 'vvi', 'GSVIVG01034494001' => 'vvi', 'HanXRQChr04g0115731' => 'han', 'HanXRQChr06g0175561' => 'han', 'HanXRQChr07g0198751' => 'han', 'HanXRQChr09g0265301' => 'han', 'HanXRQChr09g0266161' => 'han', 'HanXRQChr09g0266171' => 'han', 'HanXRQChr14g0444441' => 'han', 'HanXRQChr14g0450311' => 'han', 'HanXRQChr16g0517041' => 'han', 'Haze_05623' => 'cav', 'Haze_05624' => 'cav', 'Haze_14544' => 'cav', 'Haze_14675' => 'cav', 'Haze_14678' => 'cav', 'Haze_23968' => 'cav', 'Haze_26751' => 'cav', 'Haze_27020' => 'cav', 'Haze_27041' => 'cav', 'Hma1.2p1_0449F.1_g155450' => 'hma', 'Hma1.2p1_0449F.1_g155460' => 'hma', 'Hma1.2p1_0858F.1_g229390' => 'hma', 'Hma1.2p1_0993F.1_g245470' => 'hma', 'Hma1.2p1_0993F.1_g245480' => 'hma', 'Hma1.2p1_3249F.1_g334430' => 'hma', 'Hma1.2p1_3249F.1_g334440' => 'hma', 'HPP92_013058' => 'vpl', 'HPP92_015669' => 'vpl', 'HPP92_024321' => 'vpl', 'Hund10304' => 'sun', 'Hund15609' => 'sun', 'Hund15610' => 'sun', 'Hund17819' => 'sun', 'Lalb_Chr06g0175381' => 'lal', 'Lalb_Chr06g0176011' => 'lal', 'Lalb_Chr18g0055331' => 'lal', 'Lalb_Chr21g0319471' => 'lal', 'Lj1g0025125' => 'lja', 'Lj2A320T43' => 'lonja', 'Lj2g0001312' => 'lja', 'Lj2g0005159' => 'lja', 'Lj2g0012499' => 'lja', 'Lj2g0020540' => 'lja', 'Lj4g0023374' => 'lja', 'Lj6g0000691' => 'lja', 'Lj6g0012679' => 'lja', 'Lj6g0025469' => 'lja', 'Lj7A592T40' => 'lonja', 'Lj7C592G4' => 'lonja', 'Lju41A18T45' => 'lonja', 'Lsat_1_v5_gn_2_92021' => 'lsa', 'Lsat_1_v5_gn_4_178361' => 'lsa', 'Lsat_1_v5_gn_4_182480' => 'lsa', 'Lsat_1_v5_gn_4_182500' => 'lsa', 'Lsat_1_v5_gn_7_27640' => 'lsa', 'Manes.01G090200' => 'mes', 'Manes.15G167800' => 'mes', 'Manes.17G072000' => 'mes', 'Manes.17G116900' => 'mes', 'Manes.17G117000' => 'mes', 'Mapoly0003s0078' => 'mpo', 'MBI02_g24293_MAGBIO' => 'mbi', 'MBI02_g33229_MAGBIO' => 'mbi', 'MBI02_g43974_MAGBIO' => 'mbi', 'MBI02_g46874_MAGBIO' => 'mbi', 'MBI05_g22327_MAGBIO' => 'mbi', 'MBI05_g37763_MAGBIO' => 'mbi', 'MBI16_g05636_MAGBIO' => 'mbi', 'MCO04G080' => 'mco', 'MCO08G001' => 'mco', 'MCO10G250' => 'mco', 'MCO12G116' => 'mco', 'MCO16G488' => 'mco', 'MD05G1281600' => 'mdo', 'MD09G1032500' => 'mdo', 'MD09G1032600' => 'mdo', 'MD09G1050500' => 'mdo', 'MD17G1034100' => 'mdo', 'MD17G1034200' => 'mdo', 'Medtr2g019140' => 'mtr', 'Medtr6g007020' => 'mtr', 'Medtr6g007030' => 'mtr', 'Medtr6g007040' => 'mtr', 'Medtr6g007060' => 'mtr', 'Medtr6g011810' => 'mtr', 'MELO3C002750.2' => 'cme', 'MELO3C021546.2' => 'cme', 'MELO3C021547.2' => 'cme', 'MELO3C021985.2' => 'cme', 'Migut.H00115' => 'egut', 'Migut.H00917' => 'egut', 'Migut.K01371' => 'egut', 'Migut.M00896' => 'egut', 'MSTRG.15512' => 'ama', 'MSTRG.15513' => 'ama', 'MSTRG.23943' => 'ama', 'MSTRG.24019' => 'ama', 'MSTRG.3298' => 'ama', 'Nitab4.5_0000274g0150' => 'nta', 'Nitab4.5_0000833g0070' => 'nta', 'Nitab4.5_0001125g0070' => 'nta', 'Nitab4.5_0001709g0040' => 'nta', 'Nitab4.5_0002298g0090' => 'nta', 'Nitab4.5_0003337g0020' => 'nta', 'Nitab4.5_0006665g0010' => 'nta', 'Nitab4.5_0009022g0010' => 'nta', 'Nn4g22776' => 'nnu', 'Nn4g23147' => 'nnu', 'Nn4g26599' => 'nnu', 'Oeu030938.1' => 'oeu', 'Oeu043054.1' => 'oeu', 'Oeu062114.1' => 'oeu', 'Oeu062922.1' => 'oeu', 'Os04g0459900' => 'osa', 'Os05g0568900' => 'osa', 'Os05g0577800' => 'osa', 'Os05g0577900' => 'osa', 'Os12g0616600' => 'osa', 'Peaxi162Scf00129g01121' => 'pax', 'Peaxi162Scf00317g00115' => 'pax', 'Peaxi162Scf00777g00053' => 'pax', 'Peaxi162Scf00933g00005' => 'pax', 'PGR031G0308' => 'pgr', 'PGR142G0881' => 'pgr', 'PGR142G3003' => 'pgr', 'PGR142G3635' => 'pgr', 'PGSC0003DMG400000494' => 'stu', 'PGSC0003DMG400006931' => 'stu', 'PGSC0003DMG400006955' => 'stu', 'PGSC0003DMG400029873' => 'stu', 'Phvul.004G013600' => 'pvu', 'Phvul.004G013700' => 'pvu', 'Phvul.004G028200' => 'pvu', 'Phvul.006G166100' => 'pvu', 'Potri.001G348700' => 'ptr', 'Potri.001G348800' => 'ptr', 'Potri.004G065600' => 'ptr', 'Potri.004G129200' => 'ptr', 'Potri.011G083300' => 'ptr', 'Pp3c11_23840' => 'ppa', 'Pp3c14_9200' => 'ppa', 'Pp3c1_16510' => 'ppa', 'Pp3c1_26730' => 'ppa', 'Pp3c20_2930' => 'ppa', 'Pp3c25_9610' => 'ppa', 'Pp3c3_32970' => 'ppa', 'Pp3c4_1870' => 'ppa', 'Pp3s30_1210' => 'ppa', 'PRCOL_00000041' => 'pco', 'PRCOL_00000212' => 'pco', 'PRCOL_00004402' => 'pco', 'Prupe.3G268300' => 'ppe', 'Prupe.3G285400' => 'ppe', 'Prupe.3G285500' => 'ppe', 'Prupe.4G083000' => 'ppe', 'Prupe.8G052500' => 'ppe', 'Psat0s3401g0080' => 'psa', 'Psat1g057120' => 'psa', 'Psat1g057160' => 'psa', 'Psat1g074480' => 'psa', 'Psat1g191040' => 'psa', 'Psat1g219520' => 'psa', 'PSO017G2653' => 'pso', 'PSO017G2683' => 'pso', 'PSO017G3520' => 'pso', 'PSO017G4909' => 'pso', 'PSO017G5739' => 'pso', 'PSO017G6424' => 'pso', 'PSO170G6906' => 'pso', 'PSO323G0001' => 'pso', 'PSO396G0001' => 'pso', 'PSO478G2102' => 'pso', 'PSO478G3469' => 'pso', 'PSO478G5059' => 'pso', 'PSO500G0136' => 'pso', 'PSO675G4930' => 'pso', 'PSO706G0006' => 'pso', 'PSO706G0012' => 'pso', 'PSO706G0014' => 'pso', 'PSO761G0233' => 'pso', 'QL02p076341' => 'qlo', 'QL02p076349' => 'qlo', 'QL02p081685' => 'qlo', 'QL05p056041' => 'qlo', 'QL05p057103' => 'qlo', 'QL05p057213' => 'qlo', 'QL05p057244' => 'qlo', 'QL05p057250' => 'qlo', 'QL09p015613' => 'qlo', 'RcHm_v2.0_Chr2g0168631' => 'rch', 'RcHm_v2.0_Chr2g0171701' => 'rch', 'RcHm_v2.0_Chr2g0171711' => 'rch', 'RcHm_v2.0_Chr5g0014431' => 'rch', 'Rhsim08G0054100' => 'rsi', 'Rhsim10G0021400' => 'rsi', 'Rhsim10G0021500' => 'rsi', 'Rhsim10G0040000' => 'rsi', 'Rhsim13G0115200' => 'rsi', 'Sabra04G0088900' => 'sbr', 'Sabra11G0066300' => 'sbr', 'Sabra16G0228300' => 'sbr', 'SalBow1G5303' => 'sbo', 'SalBow1G7722' => 'sbo', 'SalBow7G2409' => 'sbo', 'SalBow8G4304' => 'sbo', 'Sc03g0007930' => 'sci', 'Sc14g0005940' => 'sci', 'Sc16g0003610' => 'sci', 'Sc24g0001720' => 'sci', 'Sed0005946' => 'sed', 'Sed0007195' => 'sed', 'Sed0007586' => 'sed', 'Sed0026124' => 'sed', 'SEGI_03269' => 'sgi', 'SEGI_07909' => 'sgi', 'SEGI_12261' => 'sgi', 'SEGI_13753' => 'sgi', 'SEGI_15197' => 'sgi', 'SEGI_18628' => 'sgi', 'SEGI_26747' => 'sgi', 'SEGI_37884' => 'sgi', 'SGA_v2.0_scaffold135G34875' => 'sas', 'SGA_v2.0_scaffold1G00192' => 'sas', 'SGA_v2.0_scaffold30G12466' => 'sas', 'SGA_v2.0_scaffold59G20688' => 'sas', 'SMO134G0095' => 'smo', 'SMO145G0086' => 'smo', 'SMO171G0065' => 'smo', 'SMO351G0147' => 'smo', 'SMO361G0158' => 'smo', 'Solyc02g067360.3' => 'sly', 'Solyc02g067740.4' => 'sly', 'Solyc02g086830.3' => 'sly', 'Solyc08g048550.3' => 'sly', 'Sopen02g016500' => 'spe', 'Sopen02g016860' => 'spe', 'Sopen02g031600' => 'spe', 'Sopen07g006450' => 'spe', 'Sopen08g010960' => 'spe', 'Sp2g16970' => 'spa', 'Sp2g16980' => 'spa', 'Sp7g02240' => 'spa', 'Sp7g15700' => 'spa', 'TAR371G0404' => 'tar', 'TAR374G1405' => 'tar', 'TAR627G0692' => 'tar', 'TAR629G1635' => 'tar', 'TAR629G2625' => 'tar', 'THA.LOC104805392' => 'tha', 'THA.LOC104812860' => 'tha', 'THA.LOC104823191' => 'tha', 'THA.LOC104825337' => 'tha', 'Thecc.04G010000' => 'tca', 'Thecc.04G010100' => 'tca', 'Thecc.04G080500' => 'tca', 'Thecc.04G111800' => 'tca', 'Thecc.05G252100' => 'tca', 'Thecc.06G148200' => 'tca', 'Thhalv10004246m.g' => 'esa', 'Thhalv10004293m.g' => 'esa', 'Thhalv10025708m.g' => 'esa', 'Thhalv10027761m.g' => 'esa', 'TPR.G18830' => 'tpr', 'TPR.G20351' => 'tpr', 'TPR.G21391' => 'tpr', 'TPR.G2265' => 'tpr', 'TPR.G2270' => 'tpr', 'TPR.G26235' => 'tpr', 'TPR.G27993' => 'tpr', 'TWI12G0063' => 'twi', 'TWI32G0041' => 'twi', 'TWI53G0561' => 'twi', 'TWI56G1008' => 'twi', 'unitig_32.g10673' => 'ugi', 'unitig_748.g7673' => 'ugi', 'unitig_88.g27778' => 'ugi', 'unitig_899.g15516' => 'ugi', 'vmacro03335' => 'vma', 'vmacro05702' => 'vma', 'vmacro05831' => 'vma', 'vmacro05832' => 'vma', 'vmacro18250' => 'vma', 'vmacro18251' => 'vma', 'vmacro18252' => 'vma', 'vmacro23476' => 'vma', 'VMungo0464G0407' => 'vmu', 'VMungo0464G1062' => 'vmu', 'VMungo0464G2191' => 'vmu', 'VMungo0540G2226' => 'vmu', 'Zm00001eb023990' => 'zma', 'Zm00001eb031870' => 'zma', 'Zm00001eb080810' => 'zma', 'Zm00001eb296290' => 'zma', 'Zm00001eb313910' => 'zma', 'Zm00001eb339680' => 'zma', 'Zm00001eb344110' => 'zma', 'Zm00001eb344500' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001104', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001104' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001104', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '555', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001104' ) ), 'genes' => array( 'A01p10280' => 'bna', 'A02p35680' => 'bna', 'A04p12530' => 'bna', 'A06p40770' => 'bna', 'A06p40780' => 'bna', 'A06p40790' => 'bna', 'A07p28190' => 'bna', 'Aa31LG2G4840' => 'aar', 'Aa31LG6G1070' => 'aar', 'Aa31LG9G16340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.423' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.221' => 'aag', 'Actinidia06020' => 'ach', 'Actinidia06087' => 'ach', 'Actinidia16934' => 'ach', 'Actinidia33715' => 'ach', 'Actinidia35743' => 'ach', 'Actinidia35744' => 'ach', 'Actinidia36089' => 'ach', 'Ah.06g187130' => 'amhyb', 'Ah.07g199000' => 'amhyb', 'Ah.14g086390' => 'amhyb', 'AL1G21640' => 'aly', 'AL5G17420' => 'aly', 'AL5G17430' => 'aly', 'AL7G36010' => 'aly', 'AL7G50410' => 'aly', 'Aqoxy3G00645' => 'aox', 'Aqoxy3G01030' => 'aox', 'Aqoxy3G01031' => 'aox', 'Aqoxy3G02957' => 'aox', 'Aqoxy4G00068' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E40C5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VZU0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M213TK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2U024' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA6DSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHR6Q8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLD0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5BZSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE11WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNKJ1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5509F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZA2NY6' => 'arhy', 'AT3G27925' => 'ath', 'AT3G27930' => 'ath', 'AT4G18370' => 'ath', 'AT5G39830' => 'ath', 'ATR0564G198' => 'atr', 'ATR0730G028' => 'atr', 'ATR0730G148' => 'atr', 'ATR1098G116' => 'atr', 'Atru.chr10.1174' => 'acertr', 'Atru.chr6.2305' => 'acertr', 'Atru.chr6.2306' => 'acertr', 'Atru.chr8.144' => 'acertr', 'AUR62002715' => 'cqu', 'AUR62029365' => 'cqu', 'AUR62030175' => 'cqu', 'AUR62034399' => 'cqu', 'AUR62034754' => 'cqu', 'AUR62039816' => 'cqu', 'AUR62043056' => 'cqu', 'AUR62043218' => 'cqu', 'BcaB06g27379' => 'bca', 'BcaB07g30139' => 'bca', 'BcaC01g03604' => 'bca', 'BcaC02g08313' => 'bca', 'BcaC03g17495' => 'bca', 'BcaC04g21585' => 'bca', 'BcaC06g30950' => 'bca', 'BcaC06g30951' => 'bca', 'BcaC06g33770' => 'bca', 'BcaC06g33771' => 'bca', 'BcaC07g41832' => 'bca', 'BcaC09g51528' => 'bca', 'BcaNung00010' => 'bca', 'BolC1t01199H' => 'bol', 'BolC2t11515H' => 'bol', 'BolC2t11520H' => 'bol', 'BolC4t26211H' => 'bol', 'BolC4t27122H' => 'bol', 'BolC7t44223H' => 'bol', 'BolC7t44224H' => 'bol', 'BraA01t00975Z' => 'bra', 'BraA02t08570Z' => 'bra', 'BraA02t08571Z' => 'bra', 'BraA04t16914Z' => 'bra', 'BraA06t26998Z' => 'bra', 'BraA06t26999Z' => 'bra', 'C01p12230' => 'bna', 'C02p45330' => 'bna', 'C02p54520' => 'bna', 'C02p54570' => 'bna', 'C04p46270' => 'bna', 'C07p37120' => 'bna', 'C07p37130' => 'bna', 'C08p49060' => 'bna', 'CAN.G1145.1' => 'can', 'CAN.G1275.4' => 'can', 'CAN.G206.27' => 'can', 'CAN.G685.22' => 'can', 'CAN.G973.9' => 'can', 'CANSAT35G0592' => 'cansat', 'CANSAT64G0855' => 'cansat', 'CANSAT64G1134' => 'cansat', 'CANSAT64G2394' => 'cansat', 'CANSAT64G2658' => 'cansat', 'CARHR149490' => 'chi', 'CARHR149500' => 'chi', 'CARHR225140' => 'chi', 'CARHR262400' => 'chi', 'Carub.0005s0649' => 'cru', 'Carub.0005s0650' => 'cru', 'Carub.0007s2292' => 'cru', 'Carub.0007s3590' => 'cru', 'Ca_00531_v3' => 'car', 'Ca_04192_v3' => 'car', 'Ca_04279_v3' => 'car', 'Ca_26507_v3' => 'car', 'Ca_29015_v3' => 'car', 'CBR_g12057' => 'cbr', 'CBR_g19701' => 'cbr', 'CBR_g37528' => 'cbr', 'CBR_g50353' => 'cbr', 'CBR_g8333' => 'cbr', 'Cc07_g02170' => 'ccan', 'Cc07_g02180' => 'ccan', 'Cc07_g03310' => 'ccan', 'Cc11_g03520' => 'ccan', 'CDE02G2406' => 'cde', 'CDE02G4088' => 'cde', 'CDE04G3157' => 'cde', 'CDE05G3320' => 'cde', 'CDE06G1047' => 'cde', 'CDE06G1079' => 'cde', 'CDE06G1183' => 'cde', 'CDE06G2339' => 'cde', 'CDE06G2743' => 'cde', 'Cfa007422' => 'cfa', 'Cfa007542' => 'cfa', 'Cfa008566' => 'cfa', 'Cfa008567' => 'cfa', 'Ciclev10012082m.g' => 'ccl', 'Ciclev10015214m.g' => 'ccl', 'Ciclev10015353m.g' => 'ccl', 'Ciclev10016002m.g' => 'ccl', 'Ciclev10020491m.g' => 'ccl', 'CiPaw.03G027600' => 'cil', 'CiPaw.03G038600' => 'cil', 'CiPaw.03G038700' => 'cil', 'CiPaw.04G025200' => 'cil', 'CiPaw.10G090500' => 'cil', 'ClCG03G006710' => 'cla', 'ClCG09G018300' => 'cla', 'ClCG09G018970' => 'cla', 'ClCG09G018980' => 'cla', 'COL.COLO4_26643' => 'col', 'COL.COLO4_28978' => 'col', 'COL.COLO4_28980' => 'col', 'Cpa.g.sc14.5' => 'cpa', 'Cpa.g.sc17.5' => 'cpa', 'Cpa.g.sc215.8' => 'cpa', 'Cpa.g.sc215.9' => 'cpa', 'Cre01.g028350' => 'cre', 'Cre02.g088400' => 'cre', 'Cre02.g110600' => 'cre', 'Cre08.g358552' => 'cre', 'Cre12.g498500' => 'cre', 'Cre14.g630550' => 'cre', 'CsaV3_1G004620' => 'csa', 'CsaV3_5G024410' => 'csa', 'CsaV3_5G027370' => 'csa', 'CsaV3_5G027380' => 'csa', 'CsaV3_5G037980' => 'csa', 'CSS0012459' => 'camsi', 'CSS0014255' => 'camsi', 'CSS0016338' => 'camsi', 'CSS0024274' => 'camsi', 'CSS0024841' => 'camsi', 'CSS0033406' => 'camsi', 'CSS0039746' => 'camsi', 'CSS0046912' => 'camsi', 'DCAR_003899' => 'dca', 'DCAR_011134' => 'dca', 'DCAR_011201' => 'dca', 'DCAR_015045' => 'dca', 'DCAR_021687' => 'dca', 'Dinv06541' => 'din', 'Dinv32236' => 'din', 'Dinv33487' => 'din', 'Dinv35069' => 'din', 'Dinv35070' => 'din', 'Duzib133G1354' => 'dzi', 'Duzib147G0036' => 'dzi', 'Duzib147G0686' => 'dzi', 'Duzib147G1230' => 'dzi', 'Duzib235G0771' => 'dzi', 'Duzib264G0237' => 'dzi', 'ECA232G2826' => 'eca', 'ECA232G3461' => 'eca', 'ECA232G3699' => 'eca', 'ECA236G1178' => 'eca', 'ECA238G2799' => 'eca', 'EL10Ac2g02975' => 'bvu', 'EL10Ac4g08579' => 'bvu', 'EL10Ac4g08591' => 'bvu', 'EL10Ac8g19654' => 'bvu', 'Eucgr.E02422' => 'egr', 'Eucgr.I01792' => 'egr', 'Eucgr.I01793' => 'egr', 'Eucgr.I01939' => 'egr', 'FAN01G0668' => 'fan', 'FAN02G0043' => 'fan', 'FAN02G3192' => 'fan', 'FAN05G2035' => 'fan', 'FAN05G4619' => 'fan', 'FAN09G1077' => 'fan', 'FAN09G3753' => 'fan', 'FAN11G2893' => 'fan', 'FAN14G0697' => 'fan', 'FAN14G1115' => 'fan', 'FAN14G4111' => 'fan', 'FAN16G1841' => 'fan', 'FAN21G1335' => 'fan', 'FAN25G1463' => 'fan', 'FvH4_3g05290' => 'fve', 'FvH4_3g19500' => 'fve', 'FvH4_6g48710' => 'fve', 'FvH4_6g50760' => 'fve', 'FvH4_6g50761' => 'fve', 'Glyma.05G007200' => 'gma', 'Glyma.05G007402' => 'gma', 'Glyma.13G063400' => 'gma', 'Glyma.13G219400' => 'gma', 'Glyma.15G092800' => 'gma', 'Glyma.19G007800' => 'gma', 'Glyma.19G007900' => 'gma', 'Gohir.A07G220700' => 'ghi', 'Gohir.A09G017000' => 'ghi', 'Gohir.A10G042200' => 'ghi', 'Gohir.A11G067200' => 'ghi', 'Gohir.D07G227400' => 'ghi', 'Gohir.D09G015600' => 'ghi', 'Gohir.D10G043100' => 'ghi', 'Gohir.D11G071100' => 'ghi', 'Gorai.001G262300' => 'gra', 'Gorai.006G017800' => 'gra', 'Gorai.007G076400' => 'gra', 'Gorai.011G045700' => 'gra', 'GSVIVG01004589001' => 'vvi', 'GSVIVG01004602001' => 'vvi', 'GSVIVG01011396001' => 'vvi', 'GSVIVG01021522001' => 'vvi', 'GSVIVG01032469001' => 'vvi', 'GSVIVG01034494001' => 'vvi', 'HanXRQChr04g0115731' => 'han', 'HanXRQChr06g0175561' => 'han', 'HanXRQChr07g0198751' => 'han', 'HanXRQChr09g0265301' => 'han', 'HanXRQChr09g0266161' => 'han', 'HanXRQChr09g0266171' => 'han', 'HanXRQChr14g0444441' => 'han', 'HanXRQChr14g0450311' => 'han', 'HanXRQChr16g0517041' => 'han', 'Haze_05623' => 'cav', 'Haze_05624' => 'cav', 'Haze_14544' => 'cav', 'Haze_14675' => 'cav', 'Haze_14678' => 'cav', 'Haze_23968' => 'cav', 'Haze_26751' => 'cav', 'Haze_27020' => 'cav', 'Haze_27041' => 'cav', 'Hma1.2p1_0449F.1_g155450' => 'hma', 'Hma1.2p1_0449F.1_g155460' => 'hma', 'Hma1.2p1_0858F.1_g229390' => 'hma', 'Hma1.2p1_0993F.1_g245470' => 'hma', 'Hma1.2p1_0993F.1_g245480' => 'hma', 'Hma1.2p1_3249F.1_g334430' => 'hma', 'Hma1.2p1_3249F.1_g334440' => 'hma', 'HPP92_013058' => 'vpl', 'HPP92_015669' => 'vpl', 'HPP92_024321' => 'vpl', 'Hund10304' => 'sun', 'Hund15609' => 'sun', 'Hund15610' => 'sun', 'Hund17819' => 'sun', 'Lalb_Chr06g0175381' => 'lal', 'Lalb_Chr06g0176011' => 'lal', 'Lalb_Chr18g0055331' => 'lal', 'Lalb_Chr21g0319471' => 'lal', 'Lj1g0025125' => 'lja', 'Lj2A320T43' => 'lonja', 'Lj2g0001312' => 'lja', 'Lj2g0005159' => 'lja', 'Lj2g0012499' => 'lja', 'Lj2g0020540' => 'lja', 'Lj4g0023374' => 'lja', 'Lj6g0000691' => 'lja', 'Lj6g0012679' => 'lja', 'Lj6g0025469' => 'lja', 'Lj7A592T40' => 'lonja', 'Lj7C592G4' => 'lonja', 'Lju41A18T45' => 'lonja', 'Lsat_1_v5_gn_2_92021' => 'lsa', 'Lsat_1_v5_gn_4_178361' => 'lsa', 'Lsat_1_v5_gn_4_182480' => 'lsa', 'Lsat_1_v5_gn_4_182500' => 'lsa', 'Lsat_1_v5_gn_7_27640' => 'lsa', 'Manes.01G090200' => 'mes', 'Manes.15G167800' => 'mes', 'Manes.17G072000' => 'mes', 'Manes.17G116900' => 'mes', 'Manes.17G117000' => 'mes', 'Mapoly0003s0078' => 'mpo', 'MBI02_g24293_MAGBIO' => 'mbi', 'MBI02_g33229_MAGBIO' => 'mbi', 'MBI02_g43974_MAGBIO' => 'mbi', 'MBI02_g46874_MAGBIO' => 'mbi', 'MBI05_g22327_MAGBIO' => 'mbi', 'MBI05_g37763_MAGBIO' => 'mbi', 'MBI16_g05636_MAGBIO' => 'mbi', 'MCO04G080' => 'mco', 'MCO08G001' => 'mco', 'MCO10G250' => 'mco', 'MCO12G116' => 'mco', 'MCO16G488' => 'mco', 'MD05G1281600' => 'mdo', 'MD09G1032500' => 'mdo', 'MD09G1032600' => 'mdo', 'MD09G1050500' => 'mdo', 'MD17G1034100' => 'mdo', 'MD17G1034200' => 'mdo', 'Medtr2g019140' => 'mtr', 'Medtr6g007020' => 'mtr', 'Medtr6g007030' => 'mtr', 'Medtr6g007040' => 'mtr', 'Medtr6g007060' => 'mtr', 'Medtr6g011810' => 'mtr', 'MELO3C002750.2' => 'cme', 'MELO3C021546.2' => 'cme', 'MELO3C021547.2' => 'cme', 'MELO3C021985.2' => 'cme', 'Migut.H00115' => 'egut', 'Migut.H00917' => 'egut', 'Migut.K01371' => 'egut', 'Migut.M00896' => 'egut', 'MSTRG.15512' => 'ama', 'MSTRG.15513' => 'ama', 'MSTRG.23943' => 'ama', 'MSTRG.24019' => 'ama', 'MSTRG.3298' => 'ama', 'Nitab4.5_0000274g0150' => 'nta', 'Nitab4.5_0000833g0070' => 'nta', 'Nitab4.5_0001125g0070' => 'nta', 'Nitab4.5_0001709g0040' => 'nta', 'Nitab4.5_0002298g0090' => 'nta', 'Nitab4.5_0003337g0020' => 'nta', 'Nitab4.5_0006665g0010' => 'nta', 'Nitab4.5_0009022g0010' => 'nta', 'Nn4g22776' => 'nnu', 'Nn4g23147' => 'nnu', 'Nn4g26599' => 'nnu', 'Oeu030938.1' => 'oeu', 'Oeu043054.1' => 'oeu', 'Oeu062114.1' => 'oeu', 'Oeu062922.1' => 'oeu', 'Os04g0459900' => 'osa', 'Os05g0568900' => 'osa', 'Os05g0577800' => 'osa', 'Os05g0577900' => 'osa', 'Os12g0616600' => 'osa', 'Peaxi162Scf00129g01121' => 'pax', 'Peaxi162Scf00317g00115' => 'pax', 'Peaxi162Scf00777g00053' => 'pax', 'Peaxi162Scf00933g00005' => 'pax', 'PGR031G0308' => 'pgr', 'PGR142G0881' => 'pgr', 'PGR142G3003' => 'pgr', 'PGR142G3635' => 'pgr', 'PGSC0003DMG400000494' => 'stu', 'PGSC0003DMG400006931' => 'stu', 'PGSC0003DMG400006955' => 'stu', 'PGSC0003DMG400029873' => 'stu', 'Phvul.004G013600' => 'pvu', 'Phvul.004G013700' => 'pvu', 'Phvul.004G028200' => 'pvu', 'Phvul.006G166100' => 'pvu', 'Potri.001G348700' => 'ptr', 'Potri.001G348800' => 'ptr', 'Potri.004G065600' => 'ptr', 'Potri.004G129200' => 'ptr', 'Potri.011G083300' => 'ptr', 'Pp3c11_23840' => 'ppa', 'Pp3c14_9200' => 'ppa', 'Pp3c1_16510' => 'ppa', 'Pp3c1_26730' => 'ppa', 'Pp3c20_2930' => 'ppa', 'Pp3c25_9610' => 'ppa', 'Pp3c3_32970' => 'ppa', 'Pp3c4_1870' => 'ppa', 'Pp3s30_1210' => 'ppa', 'PRCOL_00000041' => 'pco', 'PRCOL_00000212' => 'pco', 'PRCOL_00004402' => 'pco', 'Prupe.3G268300' => 'ppe', 'Prupe.3G285400' => 'ppe', 'Prupe.3G285500' => 'ppe', 'Prupe.4G083000' => 'ppe', 'Prupe.8G052500' => 'ppe', 'Psat0s3401g0080' => 'psa', 'Psat1g057120' => 'psa', 'Psat1g057160' => 'psa', 'Psat1g074480' => 'psa', 'Psat1g191040' => 'psa', 'Psat1g219520' => 'psa', 'PSO017G2653' => 'pso', 'PSO017G2683' => 'pso', 'PSO017G3520' => 'pso', 'PSO017G4909' => 'pso', 'PSO017G5739' => 'pso', 'PSO017G6424' => 'pso', 'PSO170G6906' => 'pso', 'PSO323G0001' => 'pso', 'PSO396G0001' => 'pso', 'PSO478G2102' => 'pso', 'PSO478G3469' => 'pso', 'PSO478G5059' => 'pso', 'PSO500G0136' => 'pso', 'PSO675G4930' => 'pso', 'PSO706G0006' => 'pso', 'PSO706G0012' => 'pso', 'PSO706G0014' => 'pso', 'PSO761G0233' => 'pso', 'QL02p076341' => 'qlo', 'QL02p076349' => 'qlo', 'QL02p081685' => 'qlo', 'QL05p056041' => 'qlo', 'QL05p057103' => 'qlo', 'QL05p057213' => 'qlo', 'QL05p057244' => 'qlo', 'QL05p057250' => 'qlo', 'QL09p015613' => 'qlo', 'RcHm_v2.0_Chr2g0168631' => 'rch', 'RcHm_v2.0_Chr2g0171701' => 'rch', 'RcHm_v2.0_Chr2g0171711' => 'rch', 'RcHm_v2.0_Chr5g0014431' => 'rch', 'Rhsim08G0054100' => 'rsi', 'Rhsim10G0021400' => 'rsi', 'Rhsim10G0021500' => 'rsi', 'Rhsim10G0040000' => 'rsi', 'Rhsim13G0115200' => 'rsi', 'Sabra04G0088900' => 'sbr', 'Sabra11G0066300' => 'sbr', 'Sabra16G0228300' => 'sbr', 'SalBow1G5303' => 'sbo', 'SalBow1G7722' => 'sbo', 'SalBow7G2409' => 'sbo', 'SalBow8G4304' => 'sbo', 'Sc03g0007930' => 'sci', 'Sc14g0005940' => 'sci', 'Sc16g0003610' => 'sci', 'Sc24g0001720' => 'sci', 'Sed0005946' => 'sed', 'Sed0007195' => 'sed', 'Sed0007586' => 'sed', 'Sed0026124' => 'sed', 'SEGI_03269' => 'sgi', 'SEGI_07909' => 'sgi', 'SEGI_12261' => 'sgi', 'SEGI_13753' => 'sgi', 'SEGI_15197' => 'sgi', 'SEGI_18628' => 'sgi', 'SEGI_26747' => 'sgi', 'SEGI_37884' => 'sgi', 'SGA_v2.0_scaffold135G34875' => 'sas', 'SGA_v2.0_scaffold1G00192' => 'sas', 'SGA_v2.0_scaffold30G12466' => 'sas', 'SGA_v2.0_scaffold59G20688' => 'sas', 'SMO134G0095' => 'smo', 'SMO145G0086' => 'smo', 'SMO171G0065' => 'smo', 'SMO351G0147' => 'smo', 'SMO361G0158' => 'smo', 'Solyc02g067360.3' => 'sly', 'Solyc02g067740.4' => 'sly', 'Solyc02g086830.3' => 'sly', 'Solyc08g048550.3' => 'sly', 'Sopen02g016500' => 'spe', 'Sopen02g016860' => 'spe', 'Sopen02g031600' => 'spe', 'Sopen07g006450' => 'spe', 'Sopen08g010960' => 'spe', 'Sp2g16970' => 'spa', 'Sp2g16980' => 'spa', 'Sp7g02240' => 'spa', 'Sp7g15700' => 'spa', 'TAR371G0404' => 'tar', 'TAR374G1405' => 'tar', 'TAR627G0692' => 'tar', 'TAR629G1635' => 'tar', 'TAR629G2625' => 'tar', 'THA.LOC104805392' => 'tha', 'THA.LOC104812860' => 'tha', 'THA.LOC104823191' => 'tha', 'THA.LOC104825337' => 'tha', 'Thecc.04G010000' => 'tca', 'Thecc.04G010100' => 'tca', 'Thecc.04G080500' => 'tca', 'Thecc.04G111800' => 'tca', 'Thecc.05G252100' => 'tca', 'Thecc.06G148200' => 'tca', 'Thhalv10004246m.g' => 'esa', 'Thhalv10004293m.g' => 'esa', 'Thhalv10025708m.g' => 'esa', 'Thhalv10027761m.g' => 'esa', 'TPR.G18830' => 'tpr', 'TPR.G20351' => 'tpr', 'TPR.G21391' => 'tpr', 'TPR.G2265' => 'tpr', 'TPR.G2270' => 'tpr', 'TPR.G26235' => 'tpr', 'TPR.G27993' => 'tpr', 'TWI12G0063' => 'twi', 'TWI32G0041' => 'twi', 'TWI53G0561' => 'twi', 'TWI56G1008' => 'twi', 'unitig_32.g10673' => 'ugi', 'unitig_748.g7673' => 'ugi', 'unitig_88.g27778' => 'ugi', 'unitig_899.g15516' => 'ugi', 'vmacro03335' => 'vma', 'vmacro05702' => 'vma', 'vmacro05831' => 'vma', 'vmacro05832' => 'vma', 'vmacro18250' => 'vma', 'vmacro18251' => 'vma', 'vmacro18252' => 'vma', 'vmacro23476' => 'vma', 'VMungo0464G0407' => 'vmu', 'VMungo0464G1062' => 'vmu', 'VMungo0464G2191' => 'vmu', 'VMungo0540G2226' => 'vmu', 'Zm00001eb023990' => 'zma', 'Zm00001eb031870' => 'zma', 'Zm00001eb080810' => 'zma', 'Zm00001eb296290' => 'zma', 'Zm00001eb313910' => 'zma', 'Zm00001eb339680' => 'zma', 'Zm00001eb344110' => 'zma', 'Zm00001eb344500' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001104' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001104' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001104' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001104' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001104', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '555', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p10280' => 'bna', 'A02p35680' => 'bna', 'A04p12530' => 'bna', 'A06p40770' => 'bna', 'A06p40780' => 'bna', 'A06p40790' => 'bna', 'A07p28190' => 'bna', 'Aa31LG2G4840' => 'aar', 'Aa31LG6G1070' => 'aar', 'Aa31LG9G16340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.423' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.221' => 'aag', 'Actinidia06020' => 'ach', 'Actinidia06087' => 'ach', 'Actinidia16934' => 'ach', 'Actinidia33715' => 'ach', 'Actinidia35743' => 'ach', 'Actinidia35744' => 'ach', 'Actinidia36089' => 'ach', 'Ah.06g187130' => 'amhyb', 'Ah.07g199000' => 'amhyb', 'Ah.14g086390' => 'amhyb', 'AL1G21640' => 'aly', 'AL5G17420' => 'aly', 'AL5G17430' => 'aly', 'AL7G36010' => 'aly', 'AL7G50410' => 'aly', 'Aqoxy3G00645' => 'aox', 'Aqoxy3G01030' => 'aox', 'Aqoxy3G01031' => 'aox', 'Aqoxy3G02957' => 'aox', 'Aqoxy4G00068' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E40C5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VZU0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M213TK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2U024' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA6DSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHR6Q8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLD0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5BZSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE11WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNKJ1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5509F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZA2NY6' => 'arhy', 'AT3G27925' => 'ath', 'AT3G27930' => 'ath', 'AT4G18370' => 'ath', 'AT5G39830' => 'ath', 'ATR0564G198' => 'atr', 'ATR0730G028' => 'atr', 'ATR0730G148' => 'atr', 'ATR1098G116' => 'atr', 'Atru.chr10.1174' => 'acertr', 'Atru.chr6.2305' => 'acertr', 'Atru.chr6.2306' => 'acertr', 'Atru.chr8.144' => 'acertr', 'AUR62002715' => 'cqu', 'AUR62029365' => 'cqu', 'AUR62030175' => 'cqu', 'AUR62034399' => 'cqu', 'AUR62034754' => 'cqu', 'AUR62039816' => 'cqu', 'AUR62043056' => 'cqu', 'AUR62043218' => 'cqu', 'BcaB06g27379' => 'bca', 'BcaB07g30139' => 'bca', 'BcaC01g03604' => 'bca', 'BcaC02g08313' => 'bca', 'BcaC03g17495' => 'bca', 'BcaC04g21585' => 'bca', 'BcaC06g30950' => 'bca', 'BcaC06g30951' => 'bca', 'BcaC06g33770' => 'bca', 'BcaC06g33771' => 'bca', 'BcaC07g41832' => 'bca', 'BcaC09g51528' => 'bca', 'BcaNung00010' => 'bca', 'BolC1t01199H' => 'bol', 'BolC2t11515H' => 'bol', 'BolC2t11520H' => 'bol', 'BolC4t26211H' => 'bol', 'BolC4t27122H' => 'bol', 'BolC7t44223H' => 'bol', 'BolC7t44224H' => 'bol', 'BraA01t00975Z' => 'bra', 'BraA02t08570Z' => 'bra', 'BraA02t08571Z' => 'bra', 'BraA04t16914Z' => 'bra', 'BraA06t26998Z' => 'bra', 'BraA06t26999Z' => 'bra', 'C01p12230' => 'bna', 'C02p45330' => 'bna', 'C02p54520' => 'bna', 'C02p54570' => 'bna', 'C04p46270' => 'bna', 'C07p37120' => 'bna', 'C07p37130' => 'bna', 'C08p49060' => 'bna', 'CAN.G1145.1' => 'can', 'CAN.G1275.4' => 'can', 'CAN.G206.27' => 'can', 'CAN.G685.22' => 'can', 'CAN.G973.9' => 'can', 'CANSAT35G0592' => 'cansat', 'CANSAT64G0855' => 'cansat', 'CANSAT64G1134' => 'cansat', 'CANSAT64G2394' => 'cansat', 'CANSAT64G2658' => 'cansat', 'CARHR149490' => 'chi', 'CARHR149500' => 'chi', 'CARHR225140' => 'chi', 'CARHR262400' => 'chi', 'Carub.0005s0649' => 'cru', 'Carub.0005s0650' => 'cru', 'Carub.0007s2292' => 'cru', 'Carub.0007s3590' => 'cru', 'Ca_00531_v3' => 'car', 'Ca_04192_v3' => 'car', 'Ca_04279_v3' => 'car', 'Ca_26507_v3' => 'car', 'Ca_29015_v3' => 'car', 'CBR_g12057' => 'cbr', 'CBR_g19701' => 'cbr', 'CBR_g37528' => 'cbr', 'CBR_g50353' => 'cbr', 'CBR_g8333' => 'cbr', 'Cc07_g02170' => 'ccan', 'Cc07_g02180' => 'ccan', 'Cc07_g03310' => 'ccan', 'Cc11_g03520' => 'ccan', 'CDE02G2406' => 'cde', 'CDE02G4088' => 'cde', 'CDE04G3157' => 'cde', 'CDE05G3320' => 'cde', 'CDE06G1047' => 'cde', 'CDE06G1079' => 'cde', 'CDE06G1183' => 'cde', 'CDE06G2339' => 'cde', 'CDE06G2743' => 'cde', 'Cfa007422' => 'cfa', 'Cfa007542' => 'cfa', 'Cfa008566' => 'cfa', 'Cfa008567' => 'cfa', 'Ciclev10012082m.g' => 'ccl', 'Ciclev10015214m.g' => 'ccl', 'Ciclev10015353m.g' => 'ccl', 'Ciclev10016002m.g' => 'ccl', 'Ciclev10020491m.g' => 'ccl', 'CiPaw.03G027600' => 'cil', 'CiPaw.03G038600' => 'cil', 'CiPaw.03G038700' => 'cil', 'CiPaw.04G025200' => 'cil', 'CiPaw.10G090500' => 'cil', 'ClCG03G006710' => 'cla', 'ClCG09G018300' => 'cla', 'ClCG09G018970' => 'cla', 'ClCG09G018980' => 'cla', 'COL.COLO4_26643' => 'col', 'COL.COLO4_28978' => 'col', 'COL.COLO4_28980' => 'col', 'Cpa.g.sc14.5' => 'cpa', 'Cpa.g.sc17.5' => 'cpa', 'Cpa.g.sc215.8' => 'cpa', 'Cpa.g.sc215.9' => 'cpa', 'Cre01.g028350' => 'cre', 'Cre02.g088400' => 'cre', 'Cre02.g110600' => 'cre', 'Cre08.g358552' => 'cre', 'Cre12.g498500' => 'cre', 'Cre14.g630550' => 'cre', 'CsaV3_1G004620' => 'csa', 'CsaV3_5G024410' => 'csa', 'CsaV3_5G027370' => 'csa', 'CsaV3_5G027380' => 'csa', 'CsaV3_5G037980' => 'csa', 'CSS0012459' => 'camsi', 'CSS0014255' => 'camsi', 'CSS0016338' => 'camsi', 'CSS0024274' => 'camsi', 'CSS0024841' => 'camsi', 'CSS0033406' => 'camsi', 'CSS0039746' => 'camsi', 'CSS0046912' => 'camsi', 'DCAR_003899' => 'dca', 'DCAR_011134' => 'dca', 'DCAR_011201' => 'dca', 'DCAR_015045' => 'dca', 'DCAR_021687' => 'dca', 'Dinv06541' => 'din', 'Dinv32236' => 'din', 'Dinv33487' => 'din', 'Dinv35069' => 'din', 'Dinv35070' => 'din', 'Duzib133G1354' => 'dzi', 'Duzib147G0036' => 'dzi', 'Duzib147G0686' => 'dzi', 'Duzib147G1230' => 'dzi', 'Duzib235G0771' => 'dzi', 'Duzib264G0237' => 'dzi', 'ECA232G2826' => 'eca', 'ECA232G3461' => 'eca', 'ECA232G3699' => 'eca', 'ECA236G1178' => 'eca', 'ECA238G2799' => 'eca', 'EL10Ac2g02975' => 'bvu', 'EL10Ac4g08579' => 'bvu', 'EL10Ac4g08591' => 'bvu', 'EL10Ac8g19654' => 'bvu', 'Eucgr.E02422' => 'egr', 'Eucgr.I01792' => 'egr', 'Eucgr.I01793' => 'egr', 'Eucgr.I01939' => 'egr', 'FAN01G0668' => 'fan', 'FAN02G0043' => 'fan', 'FAN02G3192' => 'fan', 'FAN05G2035' => 'fan', 'FAN05G4619' => 'fan', 'FAN09G1077' => 'fan', 'FAN09G3753' => 'fan', 'FAN11G2893' => 'fan', 'FAN14G0697' => 'fan', 'FAN14G1115' => 'fan', 'FAN14G4111' => 'fan', 'FAN16G1841' => 'fan', 'FAN21G1335' => 'fan', 'FAN25G1463' => 'fan', 'FvH4_3g05290' => 'fve', 'FvH4_3g19500' => 'fve', 'FvH4_6g48710' => 'fve', 'FvH4_6g50760' => 'fve', 'FvH4_6g50761' => 'fve', 'Glyma.05G007200' => 'gma', 'Glyma.05G007402' => 'gma', 'Glyma.13G063400' => 'gma', 'Glyma.13G219400' => 'gma', 'Glyma.15G092800' => 'gma', 'Glyma.19G007800' => 'gma', 'Glyma.19G007900' => 'gma', 'Gohir.A07G220700' => 'ghi', 'Gohir.A09G017000' => 'ghi', 'Gohir.A10G042200' => 'ghi', 'Gohir.A11G067200' => 'ghi', 'Gohir.D07G227400' => 'ghi', 'Gohir.D09G015600' => 'ghi', 'Gohir.D10G043100' => 'ghi', 'Gohir.D11G071100' => 'ghi', 'Gorai.001G262300' => 'gra', 'Gorai.006G017800' => 'gra', 'Gorai.007G076400' => 'gra', 'Gorai.011G045700' => 'gra', 'GSVIVG01004589001' => 'vvi', 'GSVIVG01004602001' => 'vvi', 'GSVIVG01011396001' => 'vvi', 'GSVIVG01021522001' => 'vvi', 'GSVIVG01032469001' => 'vvi', 'GSVIVG01034494001' => 'vvi', 'HanXRQChr04g0115731' => 'han', 'HanXRQChr06g0175561' => 'han', 'HanXRQChr07g0198751' => 'han', 'HanXRQChr09g0265301' => 'han', 'HanXRQChr09g0266161' => 'han', 'HanXRQChr09g0266171' => 'han', 'HanXRQChr14g0444441' => 'han', 'HanXRQChr14g0450311' => 'han', 'HanXRQChr16g0517041' => 'han', 'Haze_05623' => 'cav', 'Haze_05624' => 'cav', 'Haze_14544' => 'cav', 'Haze_14675' => 'cav', 'Haze_14678' => 'cav', 'Haze_23968' => 'cav', 'Haze_26751' => 'cav', 'Haze_27020' => 'cav', 'Haze_27041' => 'cav', 'Hma1.2p1_0449F.1_g155450' => 'hma', 'Hma1.2p1_0449F.1_g155460' => 'hma', 'Hma1.2p1_0858F.1_g229390' => 'hma', 'Hma1.2p1_0993F.1_g245470' => 'hma', 'Hma1.2p1_0993F.1_g245480' => 'hma', 'Hma1.2p1_3249F.1_g334430' => 'hma', 'Hma1.2p1_3249F.1_g334440' => 'hma', 'HPP92_013058' => 'vpl', 'HPP92_015669' => 'vpl', 'HPP92_024321' => 'vpl', 'Hund10304' => 'sun', 'Hund15609' => 'sun', 'Hund15610' => 'sun', 'Hund17819' => 'sun', 'Lalb_Chr06g0175381' => 'lal', 'Lalb_Chr06g0176011' => 'lal', 'Lalb_Chr18g0055331' => 'lal', 'Lalb_Chr21g0319471' => 'lal', 'Lj1g0025125' => 'lja', 'Lj2A320T43' => 'lonja', 'Lj2g0001312' => 'lja', 'Lj2g0005159' => 'lja', 'Lj2g0012499' => 'lja', 'Lj2g0020540' => 'lja', 'Lj4g0023374' => 'lja', 'Lj6g0000691' => 'lja', 'Lj6g0012679' => 'lja', 'Lj6g0025469' => 'lja', 'Lj7A592T40' => 'lonja', 'Lj7C592G4' => 'lonja', 'Lju41A18T45' => 'lonja', 'Lsat_1_v5_gn_2_92021' => 'lsa', 'Lsat_1_v5_gn_4_178361' => 'lsa', 'Lsat_1_v5_gn_4_182480' => 'lsa', 'Lsat_1_v5_gn_4_182500' => 'lsa', 'Lsat_1_v5_gn_7_27640' => 'lsa', 'Manes.01G090200' => 'mes', 'Manes.15G167800' => 'mes', 'Manes.17G072000' => 'mes', 'Manes.17G116900' => 'mes', 'Manes.17G117000' => 'mes', 'Mapoly0003s0078' => 'mpo', 'MBI02_g24293_MAGBIO' => 'mbi', 'MBI02_g33229_MAGBIO' => 'mbi', 'MBI02_g43974_MAGBIO' => 'mbi', 'MBI02_g46874_MAGBIO' => 'mbi', 'MBI05_g22327_MAGBIO' => 'mbi', 'MBI05_g37763_MAGBIO' => 'mbi', 'MBI16_g05636_MAGBIO' => 'mbi', 'MCO04G080' => 'mco', 'MCO08G001' => 'mco', 'MCO10G250' => 'mco', 'MCO12G116' => 'mco', 'MCO16G488' => 'mco', 'MD05G1281600' => 'mdo', 'MD09G1032500' => 'mdo', 'MD09G1032600' => 'mdo', 'MD09G1050500' => 'mdo', 'MD17G1034100' => 'mdo', 'MD17G1034200' => 'mdo', 'Medtr2g019140' => 'mtr', 'Medtr6g007020' => 'mtr', 'Medtr6g007030' => 'mtr', 'Medtr6g007040' => 'mtr', 'Medtr6g007060' => 'mtr', 'Medtr6g011810' => 'mtr', 'MELO3C002750.2' => 'cme', 'MELO3C021546.2' => 'cme', 'MELO3C021547.2' => 'cme', 'MELO3C021985.2' => 'cme', 'Migut.H00115' => 'egut', 'Migut.H00917' => 'egut', 'Migut.K01371' => 'egut', 'Migut.M00896' => 'egut', 'MSTRG.15512' => 'ama', 'MSTRG.15513' => 'ama', 'MSTRG.23943' => 'ama', 'MSTRG.24019' => 'ama', 'MSTRG.3298' => 'ama', 'Nitab4.5_0000274g0150' => 'nta', 'Nitab4.5_0000833g0070' => 'nta', 'Nitab4.5_0001125g0070' => 'nta', 'Nitab4.5_0001709g0040' => 'nta', 'Nitab4.5_0002298g0090' => 'nta', 'Nitab4.5_0003337g0020' => 'nta', 'Nitab4.5_0006665g0010' => 'nta', 'Nitab4.5_0009022g0010' => 'nta', 'Nn4g22776' => 'nnu', 'Nn4g23147' => 'nnu', 'Nn4g26599' => 'nnu', 'Oeu030938.1' => 'oeu', 'Oeu043054.1' => 'oeu', 'Oeu062114.1' => 'oeu', 'Oeu062922.1' => 'oeu', 'Os04g0459900' => 'osa', 'Os05g0568900' => 'osa', 'Os05g0577800' => 'osa', 'Os05g0577900' => 'osa', 'Os12g0616600' => 'osa', 'Peaxi162Scf00129g01121' => 'pax', 'Peaxi162Scf00317g00115' => 'pax', 'Peaxi162Scf00777g00053' => 'pax', 'Peaxi162Scf00933g00005' => 'pax', 'PGR031G0308' => 'pgr', 'PGR142G0881' => 'pgr', 'PGR142G3003' => 'pgr', 'PGR142G3635' => 'pgr', 'PGSC0003DMG400000494' => 'stu', 'PGSC0003DMG400006931' => 'stu', 'PGSC0003DMG400006955' => 'stu', 'PGSC0003DMG400029873' => 'stu', 'Phvul.004G013600' => 'pvu', 'Phvul.004G013700' => 'pvu', 'Phvul.004G028200' => 'pvu', 'Phvul.006G166100' => 'pvu', 'Potri.001G348700' => 'ptr', 'Potri.001G348800' => 'ptr', 'Potri.004G065600' => 'ptr', 'Potri.004G129200' => 'ptr', 'Potri.011G083300' => 'ptr', 'Pp3c11_23840' => 'ppa', 'Pp3c14_9200' => 'ppa', 'Pp3c1_16510' => 'ppa', 'Pp3c1_26730' => 'ppa', 'Pp3c20_2930' => 'ppa', 'Pp3c25_9610' => 'ppa', 'Pp3c3_32970' => 'ppa', 'Pp3c4_1870' => 'ppa', 'Pp3s30_1210' => 'ppa', 'PRCOL_00000041' => 'pco', 'PRCOL_00000212' => 'pco', 'PRCOL_00004402' => 'pco', 'Prupe.3G268300' => 'ppe', 'Prupe.3G285400' => 'ppe', 'Prupe.3G285500' => 'ppe', 'Prupe.4G083000' => 'ppe', 'Prupe.8G052500' => 'ppe', 'Psat0s3401g0080' => 'psa', 'Psat1g057120' => 'psa', 'Psat1g057160' => 'psa', 'Psat1g074480' => 'psa', 'Psat1g191040' => 'psa', 'Psat1g219520' => 'psa', 'PSO017G2653' => 'pso', 'PSO017G2683' => 'pso', 'PSO017G3520' => 'pso', 'PSO017G4909' => 'pso', 'PSO017G5739' => 'pso', 'PSO017G6424' => 'pso', 'PSO170G6906' => 'pso', 'PSO323G0001' => 'pso', 'PSO396G0001' => 'pso', 'PSO478G2102' => 'pso', 'PSO478G3469' => 'pso', 'PSO478G5059' => 'pso', 'PSO500G0136' => 'pso', 'PSO675G4930' => 'pso', 'PSO706G0006' => 'pso', 'PSO706G0012' => 'pso', 'PSO706G0014' => 'pso', 'PSO761G0233' => 'pso', 'QL02p076341' => 'qlo', 'QL02p076349' => 'qlo', 'QL02p081685' => 'qlo', 'QL05p056041' => 'qlo', 'QL05p057103' => 'qlo', 'QL05p057213' => 'qlo', 'QL05p057244' => 'qlo', 'QL05p057250' => 'qlo', 'QL09p015613' => 'qlo', 'RcHm_v2.0_Chr2g0168631' => 'rch', 'RcHm_v2.0_Chr2g0171701' => 'rch', 'RcHm_v2.0_Chr2g0171711' => 'rch', 'RcHm_v2.0_Chr5g0014431' => 'rch', 'Rhsim08G0054100' => 'rsi', 'Rhsim10G0021400' => 'rsi', 'Rhsim10G0021500' => 'rsi', 'Rhsim10G0040000' => 'rsi', 'Rhsim13G0115200' => 'rsi', 'Sabra04G0088900' => 'sbr', 'Sabra11G0066300' => 'sbr', 'Sabra16G0228300' => 'sbr', 'SalBow1G5303' => 'sbo', 'SalBow1G7722' => 'sbo', 'SalBow7G2409' => 'sbo', 'SalBow8G4304' => 'sbo', 'Sc03g0007930' => 'sci', 'Sc14g0005940' => 'sci', 'Sc16g0003610' => 'sci', 'Sc24g0001720' => 'sci', 'Sed0005946' => 'sed', 'Sed0007195' => 'sed', 'Sed0007586' => 'sed', 'Sed0026124' => 'sed', 'SEGI_03269' => 'sgi', 'SEGI_07909' => 'sgi', 'SEGI_12261' => 'sgi', 'SEGI_13753' => 'sgi', 'SEGI_15197' => 'sgi', 'SEGI_18628' => 'sgi', 'SEGI_26747' => 'sgi', 'SEGI_37884' => 'sgi', 'SGA_v2.0_scaffold135G34875' => 'sas', 'SGA_v2.0_scaffold1G00192' => 'sas', 'SGA_v2.0_scaffold30G12466' => 'sas', 'SGA_v2.0_scaffold59G20688' => 'sas', 'SMO134G0095' => 'smo', 'SMO145G0086' => 'smo', 'SMO171G0065' => 'smo', 'SMO351G0147' => 'smo', 'SMO361G0158' => 'smo', 'Solyc02g067360.3' => 'sly', 'Solyc02g067740.4' => 'sly', 'Solyc02g086830.3' => 'sly', 'Solyc08g048550.3' => 'sly', 'Sopen02g016500' => 'spe', 'Sopen02g016860' => 'spe', 'Sopen02g031600' => 'spe', 'Sopen07g006450' => 'spe', 'Sopen08g010960' => 'spe', 'Sp2g16970' => 'spa', 'Sp2g16980' => 'spa', 'Sp7g02240' => 'spa', 'Sp7g15700' => 'spa', 'TAR371G0404' => 'tar', 'TAR374G1405' => 'tar', 'TAR627G0692' => 'tar', 'TAR629G1635' => 'tar', 'TAR629G2625' => 'tar', 'THA.LOC104805392' => 'tha', 'THA.LOC104812860' => 'tha', 'THA.LOC104823191' => 'tha', 'THA.LOC104825337' => 'tha', 'Thecc.04G010000' => 'tca', 'Thecc.04G010100' => 'tca', 'Thecc.04G080500' => 'tca', 'Thecc.04G111800' => 'tca', 'Thecc.05G252100' => 'tca', 'Thecc.06G148200' => 'tca', 'Thhalv10004246m.g' => 'esa', 'Thhalv10004293m.g' => 'esa', 'Thhalv10025708m.g' => 'esa', 'Thhalv10027761m.g' => 'esa', 'TPR.G18830' => 'tpr', 'TPR.G20351' => 'tpr', 'TPR.G21391' => 'tpr', 'TPR.G2265' => 'tpr', 'TPR.G2270' => 'tpr', 'TPR.G26235' => 'tpr', 'TPR.G27993' => 'tpr', 'TWI12G0063' => 'twi', 'TWI32G0041' => 'twi', 'TWI53G0561' => 'twi', 'TWI56G1008' => 'twi', 'unitig_32.g10673' => 'ugi', 'unitig_748.g7673' => 'ugi', 'unitig_88.g27778' => 'ugi', 'unitig_899.g15516' => 'ugi', 'vmacro03335' => 'vma', 'vmacro05702' => 'vma', 'vmacro05831' => 'vma', 'vmacro05832' => 'vma', 'vmacro18250' => 'vma', 'vmacro18251' => 'vma', 'vmacro18252' => 'vma', 'vmacro23476' => 'vma', 'VMungo0464G0407' => 'vmu', 'VMungo0464G1062' => 'vmu', 'VMungo0464G2191' => 'vmu', 'VMungo0540G2226' => 'vmu', 'Zm00001eb023990' => 'zma', 'Zm00001eb031870' => 'zma', 'Zm00001eb080810' => 'zma', 'Zm00001eb296290' => 'zma', 'Zm00001eb313910' => 'zma', 'Zm00001eb339680' => 'zma', 'Zm00001eb344110' => 'zma', 'Zm00001eb344500' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001104', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001104' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001104', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '555', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001104' ) ), 'genes' => array( 'A01p10280' => 'bna', 'A02p35680' => 'bna', 'A04p12530' => 'bna', 'A06p40770' => 'bna', 'A06p40780' => 'bna', 'A06p40790' => 'bna', 'A07p28190' => 'bna', 'Aa31LG2G4840' => 'aar', 'Aa31LG6G1070' => 'aar', 'Aa31LG9G16340' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.2789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.249' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.423' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.221' => 'aag', 'Actinidia06020' => 'ach', 'Actinidia06087' => 'ach', 'Actinidia16934' => 'ach', 'Actinidia33715' => 'ach', 'Actinidia35743' => 'ach', 'Actinidia35744' => 'ach', 'Actinidia36089' => 'ach', 'Ah.06g187130' => 'amhyb', 'Ah.07g199000' => 'amhyb', 'Ah.14g086390' => 'amhyb', 'AL1G21640' => 'aly', 'AL5G17420' => 'aly', 'AL5G17430' => 'aly', 'AL7G36010' => 'aly', 'AL7G50410' => 'aly', 'Aqoxy3G00645' => 'aox', 'Aqoxy3G01030' => 'aox', 'Aqoxy3G01031' => 'aox', 'Aqoxy3G02957' => 'aox', 'Aqoxy4G00068' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E40C5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8VZU0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M213TK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P2U024' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA6DSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QHR6Q8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHLD0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5BZSG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VE11WY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WNKJ1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5509F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZA2NY6' => 'arhy', 'AT3G27925' => 'ath', 'AT3G27930' => 'ath', 'AT4G18370' => 'ath', 'AT5G39830' => 'ath', 'ATR0564G198' => 'atr', 'ATR0730G028' => 'atr', 'ATR0730G148' => 'atr', 'ATR1098G116' => 'atr', 'Atru.chr10.1174' => 'acertr', 'Atru.chr6.2305' => 'acertr', 'Atru.chr6.2306' => 'acertr', 'Atru.chr8.144' => 'acertr', 'AUR62002715' => 'cqu', 'AUR62029365' => 'cqu', 'AUR62030175' => 'cqu', 'AUR62034399' => 'cqu', 'AUR62034754' => 'cqu', 'AUR62039816' => 'cqu', 'AUR62043056' => 'cqu', 'AUR62043218' => 'cqu', 'BcaB06g27379' => 'bca', 'BcaB07g30139' => 'bca', 'BcaC01g03604' => 'bca', 'BcaC02g08313' => 'bca', 'BcaC03g17495' => 'bca', 'BcaC04g21585' => 'bca', 'BcaC06g30950' => 'bca', 'BcaC06g30951' => 'bca', 'BcaC06g33770' => 'bca', 'BcaC06g33771' => 'bca', 'BcaC07g41832' => 'bca', 'BcaC09g51528' => 'bca', 'BcaNung00010' => 'bca', 'BolC1t01199H' => 'bol', 'BolC2t11515H' => 'bol', 'BolC2t11520H' => 'bol', 'BolC4t26211H' => 'bol', 'BolC4t27122H' => 'bol', 'BolC7t44223H' => 'bol', 'BolC7t44224H' => 'bol', 'BraA01t00975Z' => 'bra', 'BraA02t08570Z' => 'bra', 'BraA02t08571Z' => 'bra', 'BraA04t16914Z' => 'bra', 'BraA06t26998Z' => 'bra', 'BraA06t26999Z' => 'bra', 'C01p12230' => 'bna', 'C02p45330' => 'bna', 'C02p54520' => 'bna', 'C02p54570' => 'bna', 'C04p46270' => 'bna', 'C07p37120' => 'bna', 'C07p37130' => 'bna', 'C08p49060' => 'bna', 'CAN.G1145.1' => 'can', 'CAN.G1275.4' => 'can', 'CAN.G206.27' => 'can', 'CAN.G685.22' => 'can', 'CAN.G973.9' => 'can', 'CANSAT35G0592' => 'cansat', 'CANSAT64G0855' => 'cansat', 'CANSAT64G1134' => 'cansat', 'CANSAT64G2394' => 'cansat', 'CANSAT64G2658' => 'cansat', 'CARHR149490' => 'chi', 'CARHR149500' => 'chi', 'CARHR225140' => 'chi', 'CARHR262400' => 'chi', 'Carub.0005s0649' => 'cru', 'Carub.0005s0650' => 'cru', 'Carub.0007s2292' => 'cru', 'Carub.0007s3590' => 'cru', 'Ca_00531_v3' => 'car', 'Ca_04192_v3' => 'car', 'Ca_04279_v3' => 'car', 'Ca_26507_v3' => 'car', 'Ca_29015_v3' => 'car', 'CBR_g12057' => 'cbr', 'CBR_g19701' => 'cbr', 'CBR_g37528' => 'cbr', 'CBR_g50353' => 'cbr', 'CBR_g8333' => 'cbr', 'Cc07_g02170' => 'ccan', 'Cc07_g02180' => 'ccan', 'Cc07_g03310' => 'ccan', 'Cc11_g03520' => 'ccan', 'CDE02G2406' => 'cde', 'CDE02G4088' => 'cde', 'CDE04G3157' => 'cde', 'CDE05G3320' => 'cde', 'CDE06G1047' => 'cde', 'CDE06G1079' => 'cde', 'CDE06G1183' => 'cde', 'CDE06G2339' => 'cde', 'CDE06G2743' => 'cde', 'Cfa007422' => 'cfa', 'Cfa007542' => 'cfa', 'Cfa008566' => 'cfa', 'Cfa008567' => 'cfa', 'Ciclev10012082m.g' => 'ccl', 'Ciclev10015214m.g' => 'ccl', 'Ciclev10015353m.g' => 'ccl', 'Ciclev10016002m.g' => 'ccl', 'Ciclev10020491m.g' => 'ccl', 'CiPaw.03G027600' => 'cil', 'CiPaw.03G038600' => 'cil', 'CiPaw.03G038700' => 'cil', 'CiPaw.04G025200' => 'cil', 'CiPaw.10G090500' => 'cil', 'ClCG03G006710' => 'cla', 'ClCG09G018300' => 'cla', 'ClCG09G018970' => 'cla', 'ClCG09G018980' => 'cla', 'COL.COLO4_26643' => 'col', 'COL.COLO4_28978' => 'col', 'COL.COLO4_28980' => 'col', 'Cpa.g.sc14.5' => 'cpa', 'Cpa.g.sc17.5' => 'cpa', 'Cpa.g.sc215.8' => 'cpa', 'Cpa.g.sc215.9' => 'cpa', 'Cre01.g028350' => 'cre', 'Cre02.g088400' => 'cre', 'Cre02.g110600' => 'cre', 'Cre08.g358552' => 'cre', 'Cre12.g498500' => 'cre', 'Cre14.g630550' => 'cre', 'CsaV3_1G004620' => 'csa', 'CsaV3_5G024410' => 'csa', 'CsaV3_5G027370' => 'csa', 'CsaV3_5G027380' => 'csa', 'CsaV3_5G037980' => 'csa', 'CSS0012459' => 'camsi', 'CSS0014255' => 'camsi', 'CSS0016338' => 'camsi', 'CSS0024274' => 'camsi', 'CSS0024841' => 'camsi', 'CSS0033406' => 'camsi', 'CSS0039746' => 'camsi', 'CSS0046912' => 'camsi', 'DCAR_003899' => 'dca', 'DCAR_011134' => 'dca', 'DCAR_011201' => 'dca', 'DCAR_015045' => 'dca', 'DCAR_021687' => 'dca', 'Dinv06541' => 'din', 'Dinv32236' => 'din', 'Dinv33487' => 'din', 'Dinv35069' => 'din', 'Dinv35070' => 'din', 'Duzib133G1354' => 'dzi', 'Duzib147G0036' => 'dzi', 'Duzib147G0686' => 'dzi', 'Duzib147G1230' => 'dzi', 'Duzib235G0771' => 'dzi', 'Duzib264G0237' => 'dzi', 'ECA232G2826' => 'eca', 'ECA232G3461' => 'eca', 'ECA232G3699' => 'eca', 'ECA236G1178' => 'eca', 'ECA238G2799' => 'eca', 'EL10Ac2g02975' => 'bvu', 'EL10Ac4g08579' => 'bvu', 'EL10Ac4g08591' => 'bvu', 'EL10Ac8g19654' => 'bvu', 'Eucgr.E02422' => 'egr', 'Eucgr.I01792' => 'egr', 'Eucgr.I01793' => 'egr', 'Eucgr.I01939' => 'egr', 'FAN01G0668' => 'fan', 'FAN02G0043' => 'fan', 'FAN02G3192' => 'fan', 'FAN05G2035' => 'fan', 'FAN05G4619' => 'fan', 'FAN09G1077' => 'fan', 'FAN09G3753' => 'fan', 'FAN11G2893' => 'fan', 'FAN14G0697' => 'fan', 'FAN14G1115' => 'fan', 'FAN14G4111' => 'fan', 'FAN16G1841' => 'fan', 'FAN21G1335' => 'fan', 'FAN25G1463' => 'fan', 'FvH4_3g05290' => 'fve', 'FvH4_3g19500' => 'fve', 'FvH4_6g48710' => 'fve', 'FvH4_6g50760' => 'fve', 'FvH4_6g50761' => 'fve', 'Glyma.05G007200' => 'gma', 'Glyma.05G007402' => 'gma', 'Glyma.13G063400' => 'gma', 'Glyma.13G219400' => 'gma', 'Glyma.15G092800' => 'gma', 'Glyma.19G007800' => 'gma', 'Glyma.19G007900' => 'gma', 'Gohir.A07G220700' => 'ghi', 'Gohir.A09G017000' => 'ghi', 'Gohir.A10G042200' => 'ghi', 'Gohir.A11G067200' => 'ghi', 'Gohir.D07G227400' => 'ghi', 'Gohir.D09G015600' => 'ghi', 'Gohir.D10G043100' => 'ghi', 'Gohir.D11G071100' => 'ghi', 'Gorai.001G262300' => 'gra', 'Gorai.006G017800' => 'gra', 'Gorai.007G076400' => 'gra', 'Gorai.011G045700' => 'gra', 'GSVIVG01004589001' => 'vvi', 'GSVIVG01004602001' => 'vvi', 'GSVIVG01011396001' => 'vvi', 'GSVIVG01021522001' => 'vvi', 'GSVIVG01032469001' => 'vvi', 'GSVIVG01034494001' => 'vvi', 'HanXRQChr04g0115731' => 'han', 'HanXRQChr06g0175561' => 'han', 'HanXRQChr07g0198751' => 'han', 'HanXRQChr09g0265301' => 'han', 'HanXRQChr09g0266161' => 'han', 'HanXRQChr09g0266171' => 'han', 'HanXRQChr14g0444441' => 'han', 'HanXRQChr14g0450311' => 'han', 'HanXRQChr16g0517041' => 'han', 'Haze_05623' => 'cav', 'Haze_05624' => 'cav', 'Haze_14544' => 'cav', 'Haze_14675' => 'cav', 'Haze_14678' => 'cav', 'Haze_23968' => 'cav', 'Haze_26751' => 'cav', 'Haze_27020' => 'cav', 'Haze_27041' => 'cav', 'Hma1.2p1_0449F.1_g155450' => 'hma', 'Hma1.2p1_0449F.1_g155460' => 'hma', 'Hma1.2p1_0858F.1_g229390' => 'hma', 'Hma1.2p1_0993F.1_g245470' => 'hma', 'Hma1.2p1_0993F.1_g245480' => 'hma', 'Hma1.2p1_3249F.1_g334430' => 'hma', 'Hma1.2p1_3249F.1_g334440' => 'hma', 'HPP92_013058' => 'vpl', 'HPP92_015669' => 'vpl', 'HPP92_024321' => 'vpl', 'Hund10304' => 'sun', 'Hund15609' => 'sun', 'Hund15610' => 'sun', 'Hund17819' => 'sun', 'Lalb_Chr06g0175381' => 'lal', 'Lalb_Chr06g0176011' => 'lal', 'Lalb_Chr18g0055331' => 'lal', 'Lalb_Chr21g0319471' => 'lal', 'Lj1g0025125' => 'lja', 'Lj2A320T43' => 'lonja', 'Lj2g0001312' => 'lja', 'Lj2g0005159' => 'lja', 'Lj2g0012499' => 'lja', 'Lj2g0020540' => 'lja', 'Lj4g0023374' => 'lja', 'Lj6g0000691' => 'lja', 'Lj6g0012679' => 'lja', 'Lj6g0025469' => 'lja', 'Lj7A592T40' => 'lonja', 'Lj7C592G4' => 'lonja', 'Lju41A18T45' => 'lonja', 'Lsat_1_v5_gn_2_92021' => 'lsa', 'Lsat_1_v5_gn_4_178361' => 'lsa', 'Lsat_1_v5_gn_4_182480' => 'lsa', 'Lsat_1_v5_gn_4_182500' => 'lsa', 'Lsat_1_v5_gn_7_27640' => 'lsa', 'Manes.01G090200' => 'mes', 'Manes.15G167800' => 'mes', 'Manes.17G072000' => 'mes', 'Manes.17G116900' => 'mes', 'Manes.17G117000' => 'mes', 'Mapoly0003s0078' => 'mpo', 'MBI02_g24293_MAGBIO' => 'mbi', 'MBI02_g33229_MAGBIO' => 'mbi', 'MBI02_g43974_MAGBIO' => 'mbi', 'MBI02_g46874_MAGBIO' => 'mbi', 'MBI05_g22327_MAGBIO' => 'mbi', 'MBI05_g37763_MAGBIO' => 'mbi', 'MBI16_g05636_MAGBIO' => 'mbi', 'MCO04G080' => 'mco', 'MCO08G001' => 'mco', 'MCO10G250' => 'mco', 'MCO12G116' => 'mco', 'MCO16G488' => 'mco', 'MD05G1281600' => 'mdo', 'MD09G1032500' => 'mdo', 'MD09G1032600' => 'mdo', 'MD09G1050500' => 'mdo', 'MD17G1034100' => 'mdo', 'MD17G1034200' => 'mdo', 'Medtr2g019140' => 'mtr', 'Medtr6g007020' => 'mtr', 'Medtr6g007030' => 'mtr', 'Medtr6g007040' => 'mtr', 'Medtr6g007060' => 'mtr', 'Medtr6g011810' => 'mtr', 'MELO3C002750.2' => 'cme', 'MELO3C021546.2' => 'cme', 'MELO3C021547.2' => 'cme', 'MELO3C021985.2' => 'cme', 'Migut.H00115' => 'egut', 'Migut.H00917' => 'egut', 'Migut.K01371' => 'egut', 'Migut.M00896' => 'egut', 'MSTRG.15512' => 'ama', 'MSTRG.15513' => 'ama', 'MSTRG.23943' => 'ama', 'MSTRG.24019' => 'ama', 'MSTRG.3298' => 'ama', 'Nitab4.5_0000274g0150' => 'nta', 'Nitab4.5_0000833g0070' => 'nta', 'Nitab4.5_0001125g0070' => 'nta', 'Nitab4.5_0001709g0040' => 'nta', 'Nitab4.5_0002298g0090' => 'nta', 'Nitab4.5_0003337g0020' => 'nta', 'Nitab4.5_0006665g0010' => 'nta', 'Nitab4.5_0009022g0010' => 'nta', 'Nn4g22776' => 'nnu', 'Nn4g23147' => 'nnu', 'Nn4g26599' => 'nnu', 'Oeu030938.1' => 'oeu', 'Oeu043054.1' => 'oeu', 'Oeu062114.1' => 'oeu', 'Oeu062922.1' => 'oeu', 'Os04g0459900' => 'osa', 'Os05g0568900' => 'osa', 'Os05g0577800' => 'osa', 'Os05g0577900' => 'osa', 'Os12g0616600' => 'osa', 'Peaxi162Scf00129g01121' => 'pax', 'Peaxi162Scf00317g00115' => 'pax', 'Peaxi162Scf00777g00053' => 'pax', 'Peaxi162Scf00933g00005' => 'pax', 'PGR031G0308' => 'pgr', 'PGR142G0881' => 'pgr', 'PGR142G3003' => 'pgr', 'PGR142G3635' => 'pgr', 'PGSC0003DMG400000494' => 'stu', 'PGSC0003DMG400006931' => 'stu', 'PGSC0003DMG400006955' => 'stu', 'PGSC0003DMG400029873' => 'stu', 'Phvul.004G013600' => 'pvu', 'Phvul.004G013700' => 'pvu', 'Phvul.004G028200' => 'pvu', 'Phvul.006G166100' => 'pvu', 'Potri.001G348700' => 'ptr', 'Potri.001G348800' => 'ptr', 'Potri.004G065600' => 'ptr', 'Potri.004G129200' => 'ptr', 'Potri.011G083300' => 'ptr', 'Pp3c11_23840' => 'ppa', 'Pp3c14_9200' => 'ppa', 'Pp3c1_16510' => 'ppa', 'Pp3c1_26730' => 'ppa', 'Pp3c20_2930' => 'ppa', 'Pp3c25_9610' => 'ppa', 'Pp3c3_32970' => 'ppa', 'Pp3c4_1870' => 'ppa', 'Pp3s30_1210' => 'ppa', 'PRCOL_00000041' => 'pco', 'PRCOL_00000212' => 'pco', 'PRCOL_00004402' => 'pco', 'Prupe.3G268300' => 'ppe', 'Prupe.3G285400' => 'ppe', 'Prupe.3G285500' => 'ppe', 'Prupe.4G083000' => 'ppe', 'Prupe.8G052500' => 'ppe', 'Psat0s3401g0080' => 'psa', 'Psat1g057120' => 'psa', 'Psat1g057160' => 'psa', 'Psat1g074480' => 'psa', 'Psat1g191040' => 'psa', 'Psat1g219520' => 'psa', 'PSO017G2653' => 'pso', 'PSO017G2683' => 'pso', 'PSO017G3520' => 'pso', 'PSO017G4909' => 'pso', 'PSO017G5739' => 'pso', 'PSO017G6424' => 'pso', 'PSO170G6906' => 'pso', 'PSO323G0001' => 'pso', 'PSO396G0001' => 'pso', 'PSO478G2102' => 'pso', 'PSO478G3469' => 'pso', 'PSO478G5059' => 'pso', 'PSO500G0136' => 'pso', 'PSO675G4930' => 'pso', 'PSO706G0006' => 'pso', 'PSO706G0012' => 'pso', 'PSO706G0014' => 'pso', 'PSO761G0233' => 'pso', 'QL02p076341' => 'qlo', 'QL02p076349' => 'qlo', 'QL02p081685' => 'qlo', 'QL05p056041' => 'qlo', 'QL05p057103' => 'qlo', 'QL05p057213' => 'qlo', 'QL05p057244' => 'qlo', 'QL05p057250' => 'qlo', 'QL09p015613' => 'qlo', 'RcHm_v2.0_Chr2g0168631' => 'rch', 'RcHm_v2.0_Chr2g0171701' => 'rch', 'RcHm_v2.0_Chr2g0171711' => 'rch', 'RcHm_v2.0_Chr5g0014431' => 'rch', 'Rhsim08G0054100' => 'rsi', 'Rhsim10G0021400' => 'rsi', 'Rhsim10G0021500' => 'rsi', 'Rhsim10G0040000' => 'rsi', 'Rhsim13G0115200' => 'rsi', 'Sabra04G0088900' => 'sbr', 'Sabra11G0066300' => 'sbr', 'Sabra16G0228300' => 'sbr', 'SalBow1G5303' => 'sbo', 'SalBow1G7722' => 'sbo', 'SalBow7G2409' => 'sbo', 'SalBow8G4304' => 'sbo', 'Sc03g0007930' => 'sci', 'Sc14g0005940' => 'sci', 'Sc16g0003610' => 'sci', 'Sc24g0001720' => 'sci', 'Sed0005946' => 'sed', 'Sed0007195' => 'sed', 'Sed0007586' => 'sed', 'Sed0026124' => 'sed', 'SEGI_03269' => 'sgi', 'SEGI_07909' => 'sgi', 'SEGI_12261' => 'sgi', 'SEGI_13753' => 'sgi', 'SEGI_15197' => 'sgi', 'SEGI_18628' => 'sgi', 'SEGI_26747' => 'sgi', 'SEGI_37884' => 'sgi', 'SGA_v2.0_scaffold135G34875' => 'sas', 'SGA_v2.0_scaffold1G00192' => 'sas', 'SGA_v2.0_scaffold30G12466' => 'sas', 'SGA_v2.0_scaffold59G20688' => 'sas', 'SMO134G0095' => 'smo', 'SMO145G0086' => 'smo', 'SMO171G0065' => 'smo', 'SMO351G0147' => 'smo', 'SMO361G0158' => 'smo', 'Solyc02g067360.3' => 'sly', 'Solyc02g067740.4' => 'sly', 'Solyc02g086830.3' => 'sly', 'Solyc08g048550.3' => 'sly', 'Sopen02g016500' => 'spe', 'Sopen02g016860' => 'spe', 'Sopen02g031600' => 'spe', 'Sopen07g006450' => 'spe', 'Sopen08g010960' => 'spe', 'Sp2g16970' => 'spa', 'Sp2g16980' => 'spa', 'Sp7g02240' => 'spa', 'Sp7g15700' => 'spa', 'TAR371G0404' => 'tar', 'TAR374G1405' => 'tar', 'TAR627G0692' => 'tar', 'TAR629G1635' => 'tar', 'TAR629G2625' => 'tar', 'THA.LOC104805392' => 'tha', 'THA.LOC104812860' => 'tha', 'THA.LOC104823191' => 'tha', 'THA.LOC104825337' => 'tha', 'Thecc.04G010000' => 'tca', 'Thecc.04G010100' => 'tca', 'Thecc.04G080500' => 'tca', 'Thecc.04G111800' => 'tca', 'Thecc.05G252100' => 'tca', 'Thecc.06G148200' => 'tca', 'Thhalv10004246m.g' => 'esa', 'Thhalv10004293m.g' => 'esa', 'Thhalv10025708m.g' => 'esa', 'Thhalv10027761m.g' => 'esa', 'TPR.G18830' => 'tpr', 'TPR.G20351' => 'tpr', 'TPR.G21391' => 'tpr', 'TPR.G2265' => 'tpr', 'TPR.G2270' => 'tpr', 'TPR.G26235' => 'tpr', 'TPR.G27993' => 'tpr', 'TWI12G0063' => 'twi', 'TWI32G0041' => 'twi', 'TWI53G0561' => 'twi', 'TWI56G1008' => 'twi', 'unitig_32.g10673' => 'ugi', 'unitig_748.g7673' => 'ugi', 'unitig_88.g27778' => 'ugi', 'unitig_899.g15516' => 'ugi', 'vmacro03335' => 'vma', 'vmacro05702' => 'vma', 'vmacro05831' => 'vma', 'vmacro05832' => 'vma', 'vmacro18250' => 'vma', 'vmacro18251' => 'vma', 'vmacro18252' => 'vma', 'vmacro23476' => 'vma', 'VMungo0464G0407' => 'vmu', 'VMungo0464G1062' => 'vmu', 'VMungo0464G2191' => 'vmu', 'VMungo0540G2226' => 'vmu', 'Zm00001eb023990' => 'zma', 'Zm00001eb031870' => 'zma', 'Zm00001eb080810' => 'zma', 'Zm00001eb296290' => 'zma', 'Zm00001eb313910' => 'zma', 'Zm00001eb339680' => 'zma', 'Zm00001eb344110' => 'zma', 'Zm00001eb344500' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001104' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001104' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001104' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001104' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151