Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 0.0e+00 2189.5 1178 100.0
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 0.0e+00 1144.8 1235 60.6
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 2.1e-310 1069.3 1211 56.3
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 3.5e-305 1052.0 1208 54.4
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 7.0e-298 1027.7 1213 51.6
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 1.1e-287 993.8 1187 52.0
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.3e-280 970.3 1227 54.3
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.1e-277 959.1 975 58.6
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 6.0e-273 944.9 1214 50.9
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 1.9e-271 939.9 1215 47.3
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 1.2e-268 930.6 1182 51.9
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 9.2e-266 921.0 1213 50.1
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 6.6e-264 914.8 1233 46.1
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 9.9e-260 901.0 1211 49.9
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 2.2e-259 899.8 1214 46.0
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 2.2e-259 899.8 1214 46.0
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 2.2e-259 899.8 1225 45.3
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 4.9e-259 898.7 1218 45.4
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 1.2e-257 894.0 1258 48.8
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 3.5e-257 892.5 1253 48.0
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 1.7e-256 890.2 1265 47.7
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 5.1e-256 888.6 1261 47.7
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.1e-255 887.5 1212 46.5
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.5e-255 887.1 1211 49.3
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 3.3e-255 885.9 1211 49.2
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 5.6e-255 885.2 1211 45.2
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.2e-254 884.0 1266 47.2
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.6e-254 883.6 695 72.1
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.1e-253 880.9 1269 47.3
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 6.8e-253 878.2 1237 44.1
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 8.9e-253 877.9 1211 48.9
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 4.4e-252 875.5 1213 45.5
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 5.8e-252 875.2 1249 47.4
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 6.4e-251 871.7 1259 48.0
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.1e-250 870.9 1185 45.7
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 1.4e-250 870.5 1210 47.2
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 2.4e-250 869.8 1284 46.8
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 3.2e-250 869.4 1218 45.0
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 4.2e-250 869.0 1211 44.6
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 1.2e-249 867.5 1212 44.1
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 3.5e-249 865.9 1260 44.1
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 1.3e-248 864.0 1237 43.5
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 5.1e-248 862.1 1186 44.7
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 8.7e-248 861.3 1209 44.9
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 1.1e-247 860.9 1211 44.6
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 9.6e-247 857.8 1213 47.2
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 1.3e-246 857.4 1215 44.0
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 3.6e-246 855.9 1282 46.6
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 1.4e-245 854.0 1231 46.8
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.4e-245 853.2 1231 46.7
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 3.1e-245 852.8 1220 47.2
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 4.0e-245 852.4 1211 47.6
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 5.3e-245 852.0 1259 47.0
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 3.4e-244 849.4 725 65.9
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.7e-243 847.0 1260 46.3
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 1.4e-242 844.0 1205 47.3
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 3.5e-241 839.3 1214 47.2
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 4.6e-241 839.0 1211 46.2
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 6.0e-241 838.6 1209 44.7
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 3.0e-240 836.3 1211 49.5
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.1e-237 827.8 1189 46.8
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 6.9e-237 825.1 1220 46.1
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 9.0e-237 824.7 1238 42.1
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 2.0e-236 823.5 1211 43.0
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 7.6e-236 821.6 1211 47.9
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 9.9e-236 821.2 1078 53.4
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 2.2e-235 820.1 1207 43.6
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 8.4e-235 818.1 1209 43.4
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 3.2e-234 816.2 1218 42.7
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.2e-234 816.2 1220 45.8
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 4.6e-233 812.4 1216 47.5
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 2.3e-232 810.1 1219 46.7
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 5.6e-231 805.4 1232 42.5
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 7.4e-231 805.1 1225 41.9
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 9.6e-231 804.7 1205 45.6
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 2.1e-230 803.5 1218 41.9
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 4.8e-230 802.4 1265 45.1
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 4.8e-230 802.4 1211 45.5
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.1e-229 801.2 1225 41.8
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 9.0e-229 798.1 1206 45.5
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 1.2e-228 797.7 623 64.0
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 1.5e-228 797.3 1193 42.7
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 2.6e-228 796.6 1235 41.5
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 5.8e-228 795.4 1212 41.9
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 4.9e-227 792.3 590 68.5
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 5.5e-226 788.9 1015 46.9
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 3.5e-225 786.2 1235 41.2
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 6.0e-225 785.4 1207 42.4
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 3.9e-224 782.7 585 67.4
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 5.1e-224 782.3 1221 44.9
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 2.5e-223 780.0 1142 43.8
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 4.3e-223 779.2 1208 41.4
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 1.2e-220 771.2 1221 41.4
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 3.4e-220 769.6 1210 46.2
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 4.2e-218 762.7 1207 45.7
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 1.5e-212 744.2 1211 43.8
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 6.5e-211 738.8 1184 40.5
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 4.2e-210 736.1 1222 40.3
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 1.1e-197 694.9 1135 43.5
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 4.1e-181 639.8 1214 39.1
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.6e-180 637.9 493 64.7
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 2.5e-170 604.0 530 57.0
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 9.2e-149 532.3 1068 37.1
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 1.8e-144 518.1 975 38.6
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 5.8e-143 513.1 698 49.7
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 2.1e-129 468.0 1031 35.4
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 2.6e-127 461.1 604 44.2
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 9.9e-127 459.1 999 41.6
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 2.1e-121 441.4 263 77.9
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 7.1e-109 399.8 1025 34.9
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 1.2e-100 372.5 936 37.7
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 2.1e-100 371.7 215 81.9
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 8.2e-97 359.8 577 39.9
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 1.2e-95 355.9 544 37.3
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 6.1e-92 343.6 212 76.9
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 6.5e-86 323.6 627 38.1
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 5.7e-74 283.9 878 26.4
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 1.3e-73 282.7 353 52.1
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 1.7e-73 282.3 839 31.0
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 1.9e-69 268.9 280 54.3
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.0e-51 209.9 376 41.5
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 4.3e-45 188.0 142 59.2
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 4.4e-42 177.9 140 64.3
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.8e-42 177.6 112 82.1
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 7.5e-42 177.2 140 64.3
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.3e-41 176.4 93 93.5
CSS0044835 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D017532 5.4e-40 171.0 121 71.9
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 5.4e-40 171.0 100 81.0
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 9.2e-40 170.2 195 50.3
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 7.3e-37 160.6 93 82.8
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.7e-33 149.4 312 40.1
CAN.G1823.3 Capsicum annuum HOM05D004966 ORTHO05D017532 4.9e-33 147.9 95 74.7
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 1.4e-32 146.4 93 76.3
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 3.2e-32 145.2 257 37.4
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.7e-31 142.1 80 88.8
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.0e-30 138.7 84 76.2
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.1e-27 130.2 154 52.6
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 4.0e-27 128.3 281 33.8
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 1.1e-24 120.2 130 53.8
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 3.2e-24 118.6 105 61.0
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 4.6e-23 114.8 70 78.6
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 9.6e-21 107.1 129 45.7
CSS0029353 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 8.4e-17 94.0 190 50.5
COL.COLO4_27263 Corchorus olitorius HOM05D010859 ORTHO05D010098 1.2e-15 90.1 168 33.9
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 8.1e-12 77.4 123 43.9
BolC1t01004H Brassica oleracea HOM05D004966 ORTHO05D017532 5.8e-10 71.2 61 55.7
CSS0019148 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.3e-09 70.1 44 75.0
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 1.4e-08 66.6 49 55.1
C01p10430 Brassica napus HOM05D003801 ORTHO05D017532 3.5e-07 62.0 141 29.8
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.5e-07 62.0 41 78.0
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 3.0e-06 58.9 38 76.3
PSO017G5894 Papaver somniferum HOM05D001789 ORTHO05D001755 3.9e-06 58.5 88 34.1


User provided reference genes

Program Settings