Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 2715.6 1368 100.0
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2307.3 1492 79.4
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1771.1 1387 65.3
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 1753.0 1363 66.5
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 1699.9 1376 62.9
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 1670.2 1377 62.0
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 1666.0 1374 61.2
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 1655.6 1373 62.6
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 1645.2 1374 62.2
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 1637.9 1375 61.6
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1634.8 1386 60.2
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1626.7 1375 61.1
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 1623.6 1373 61.3
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 1622.1 1375 60.2
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 1616.3 1381 60.4
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 1609.3 1376 60.5
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 1602.0 1374 60.5
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 1596.6 1372 60.4
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 1593.6 1365 59.6
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 1591.6 1380 59.8
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1589.7 1373 59.1
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1587.8 1320 62.5
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 1584.3 1368 59.9
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1582.4 1368 59.7
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 1580.5 1367 59.5
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 1576.2 1377 58.5
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 1574.7 1377 58.2
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1572.0 1375 59.5
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 1571.6 1386 58.2
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 1570.4 1376 60.2
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1566.6 1387 57.4
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1564.7 1378 59.8
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 1564.7 1380 57.8
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 1555.0 1401 58.5
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 1544.3 1378 59.0
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 1542.7 1374 58.7
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1538.1 1369 58.9
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1537.7 1375 59.1
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 1526.5 1336 60.5
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 1516.9 1363 58.6
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 1516.9 1429 56.2
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 1514.2 1375 57.7
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 1513.4 1375 57.2
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1511.1 1352 58.9
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 1508.0 1115 69.5
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 1507.7 1371 57.5
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1505.7 1371 57.5
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 1505.7 1401 55.2
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 1505.0 1359 57.6
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 1501.9 1389 56.4
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1501.1 1389 55.1
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1500.7 1369 56.8
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1495.7 1390 55.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 1491.9 1360 57.5
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1488.0 1367 55.9
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1486.9 1396 56.0
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1484.9 1358 56.8
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1484.5 1372 56.6
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 1480.3 1341 57.6
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1464.9 1373 55.4
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 1451.8 1382 54.7
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1450.3 1398 54.9
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1448.0 1409 53.5
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 1446.8 1382 54.6
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 1442.6 1385 54.8
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1435.2 1382 54.6
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1429.1 1381 54.5
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 1429.1 1381 54.5
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1428.3 1381 54.3
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1419.4 1363 55.3
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 1410.6 1377 55.3
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1406.3 1372 54.3
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1406.0 1243 59.5
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1404.8 1365 54.1
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1394.4 1371 54.3
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1393.6 1381 54.7
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1383.2 1382 54.3
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1380.5 1381 53.2
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1364.0 1376 52.8
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1347.4 1385 52.3
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1327.4 1232 55.6
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1311.6 1395 50.5
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1307.4 1288 54.6
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1277.3 1376 49.3
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1247.6 1182 54.6
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 6.6e-300 1034.6 1387 43.8
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 1.2e-293 1013.8 1072 50.9
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 4.8e-290 1001.9 979 53.4
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 3.0e-284 982.6 1348 42.4
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 6.5e-279 964.9 1399 41.0
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 8.4e-279 964.5 621 78.3
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 1.2e-261 907.5 1388 40.2
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 1.2e-245 854.4 1297 40.2
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.4e-212 744.6 806 49.5
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 9.2e-209 731.9 689 56.3
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 7.3e-182 642.5 698 51.7
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 3.2e-145 520.8 493 55.6
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 3.0e-135 487.6 377 64.7
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.0e-127 462.6 504 49.4
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 3.4e-118 431.0 462 48.1
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 7.8e-99 366.7 216 81.0
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.5e-97 362.5 335 58.2
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 3.3e-81 308.1 222 66.7
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.2e-61 242.3 209 58.9
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 1.1e-60 240.0 383 40.2
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.0e-58 233.4 237 54.9
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 9.0e-55 220.3 224 46.9
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.9e-52 212.6 146 71.2
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 2.5e-52 212.2 153 69.3
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 3.2e-52 211.8 152 69.7
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 2.7e-51 208.8 151 68.9
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 5.7e-49 201.1 429 34.5
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.1e-48 199.1 105 91.4
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-41 175.6 549 29.1
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.0e-37 163.7 175 53.7
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 2.5e-33 149.1 145 57.9
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 1.5e-30 139.8 146 52.1
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.3e-29 136.7 328 32.0
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 6.1e-27 127.9 113 51.3
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.0e-25 122.9 73 79.5
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.8e-21 108.6 64 81.2
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 2.0e-17 96.3 143 35.7
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 7.0e-15 87.8 121 43.0
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 9.1e-15 87.4 102 45.1
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 9.4e-12 77.4 56 62.5
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 2.1e-11 76.3 796 19.7
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 4.0e-10 72.0 780 20.8
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 2.6e-09 69.3 677 19.6
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 3.4e-09 68.9 42 78.6
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 4.4e-09 68.6 663 19.8
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 5.7e-09 68.2 595 20.8
Cc11_g00280 Coffea canephora HOM05D002653 ORTHO05D002623 2.8e-08 65.9 602 22.1
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 3.7e-08 65.5 244 22.5
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 6.3e-08 64.7 793 20.6
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 4.1e-07 62.0 791 20.9
Lsat_1_v5_gn_9_22560 Lactuca sativa HOM05D000737 ORTHO05D000581 1.2e-06 60.5 38 68.4
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 1.2e-06 60.5 612 20.8
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 7.7e-06 57.8 161 26.1


User provided reference genes

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