Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 2.2e-229 798.5 375 100.0
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 2.2e-213 745.3 375 92.3
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.1e-202 707.6 375 85.6
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 8.7e-202 706.8 375 85.6
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 2.1e-200 702.2 372 86.3
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 3.7e-200 701.4 385 84.7
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 5.8e-198 694.1 373 83.1
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 3.3e-193 678.3 374 82.1
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 8.2e-192 673.7 373 82.8
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.1e-191 673.3 372 80.6
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.4e-191 672.9 372 80.6
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.4e-191 672.2 372 82.0
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 4.0e-191 671.4 372 83.6
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 5.3e-191 671.0 372 81.5
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 6.9e-191 670.6 369 80.8
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 2.0e-190 669.1 371 81.1
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 4.5e-190 667.9 372 82.3
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 4.5e-190 667.9 372 81.5
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 5.8e-190 667.5 372 80.4
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 7.6e-190 667.2 372 80.1
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 7.6e-190 667.2 372 82.3
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.7e-189 666.0 374 78.9
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 3.8e-189 664.8 372 80.9
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 3.8e-189 664.8 370 80.8
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 3.8e-189 664.8 374 80.7
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.1e-188 663.3 367 80.9
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 1.4e-188 662.9 368 79.6
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 2.5e-188 662.1 371 81.4
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 7.1e-188 660.6 371 78.2
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 9.3e-188 660.2 371 80.6
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.2e-187 659.8 372 79.0
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.2e-187 659.8 379 78.1
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 2.1e-187 659.1 371 78.2
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 2.1e-187 659.1 371 78.4
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.6e-187 657.9 373 78.0
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 7.9e-187 657.1 372 80.4
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 7.9e-187 657.1 371 78.4
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 7.9e-187 657.1 372 79.8
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 1.8e-186 656.0 372 80.9
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 3.0e-186 655.2 372 79.0
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 5.1e-186 654.4 372 79.8
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 5.1e-186 654.4 372 78.8
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 1.5e-185 652.9 372 80.6
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 3.3e-185 651.7 371 80.1
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 4.3e-185 651.4 371 80.1
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.3e-185 651.4 390 75.9
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 5.7e-185 651.0 372 80.1
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.3e-184 649.8 372 79.6
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 2.2e-184 649.0 372 78.2
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 2.8e-184 648.7 382 80.4
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 3.7e-184 648.3 367 78.7
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.8e-183 646.0 372 78.2
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 4.5e-182 641.3 372 76.6
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 1.3e-181 639.8 372 76.6
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 2.2e-181 639.0 373 76.1
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.2e-180 634.8 373 75.9
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 7.2e-180 634.0 372 75.5
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 9.4e-180 633.6 372 76.9
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.2e-179 633.3 373 76.1
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.6e-179 632.9 372 75.5
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 3.6e-179 631.7 372 76.1
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 6.1e-179 630.9 369 75.9
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 7.9e-179 630.6 372 76.6
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.0e-178 630.2 372 76.3
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.4e-178 629.8 372 76.3
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 5.1e-178 627.9 367 76.3
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 5.1e-178 627.9 372 74.2
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 8.8e-178 627.1 356 80.1
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 1.5e-177 626.3 373 76.4
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 3.3e-177 625.2 372 77.2
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 4.3e-177 624.8 371 76.5
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 5.7e-177 624.4 372 73.7
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.8e-176 622.1 372 74.7
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 6.3e-176 620.9 380 74.2
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 2.4e-175 619.0 384 75.0
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 1.5e-174 616.3 367 75.2
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.9e-174 614.4 369 73.4
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.8e-173 611.7 348 80.2
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 8.5e-173 610.5 374 74.9
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 1.4e-172 609.8 420 68.1
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.9e-172 609.4 372 74.2
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 3.2e-172 608.6 372 72.6
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 3.2e-172 608.6 371 74.9
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.6e-171 606.3 367 72.8
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 4.7e-171 604.7 456 63.2
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 6.1e-171 604.4 372 71.8
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.0e-170 603.6 366 73.0
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 6.7e-170 600.9 369 71.8
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 2.6e-169 599.0 371 71.4
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 3.3e-169 598.6 372 74.5
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 5.7e-169 597.8 370 71.6
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 5.7e-169 597.8 368 72.6
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 7.4e-169 597.4 368 72.8
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 2.2e-168 595.9 368 72.6
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 2.8e-168 595.5 370 71.6
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 8.2e-168 594.0 367 72.8
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 1.1e-167 593.6 370 71.4
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 2.4e-167 592.4 346 77.5
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 9.1e-167 590.5 367 71.9
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.2e-166 590.1 375 73.3
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.6e-166 589.0 371 71.2
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 5.9e-166 587.8 398 67.8
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 1.4e-164 583.2 405 66.9
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.2e-163 580.1 372 68.8
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.6e-163 579.7 406 67.0
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.8e-159 566.2 370 67.0
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 3.5e-158 562.0 367 68.7
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 4.5e-158 561.6 371 67.9
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 8.5e-157 557.4 368 69.0
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.4e-154 550.1 358 67.9
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 1.2e-153 547.0 308 81.2
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.5e-153 546.6 370 67.8
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 9.7e-153 543.9 369 67.2
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.0e-149 533.9 371 65.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 8.5e-149 530.8 374 62.3
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 8.0e-147 524.2 370 64.6
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 6.3e-144 514.6 411 59.9
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 3.4e-137 492.3 293 73.7
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.8e-135 486.5 386 60.6
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 5.0e-133 478.4 372 62.1
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 4.3e-124 448.7 274 73.7
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.5e-113 413.7 345 59.7
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.2e-110 404.1 385 53.2
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 7.3e-108 394.8 250 74.4
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.2e-104 383.3 222 78.8
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 8.7e-101 371.3 215 76.3
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.4e-98 363.2 236 72.5
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 9.9e-97 357.8 372 49.5
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 2.1e-94 350.1 386 46.9
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 4.0e-90 335.9 404 45.0
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.2e-89 334.3 196 78.6
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.2e-89 334.3 385 45.5
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.0e-80 304.7 165 81.2
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 9.0e-74 281.6 170 74.1
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 2.4e-66 256.9 171 71.9
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.8e-51 206.1 476 30.5
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 6.3e-43 179.1 93 82.8
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.0e-37 160.2 129 65.9
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 2.9e-32 143.7 101 66.3
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 8.5e-32 142.1 101 65.3
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 7.2e-31 139.0 83 75.9
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 8.0e-30 135.6 92 71.7
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 7.7e-25 119.0 338 28.4
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.3e-16 91.7 163 35.0
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 3.9e-16 90.1 43 90.7
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 1.2e-14 85.1 45 84.4
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 2.8e-14 84.0 47 76.6
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 4.7e-14 83.2 46 73.9
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 5.8e-12 76.3 40 82.5
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 2.5e-07 60.8 30 70.0
RcHm_v2.0_Chr4g0407271 Rosa chinensis HOM05D004692 ORTHO05D342244 4.7e-06 56.6 28 82.1


User provided reference genes

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