Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16985 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 4.3e-113 411.4 216 100.0
Actinidia09002 Actinidia chinensis HOM05D005732 ORTHO05D007062 4.0e-74 282.0 215 72.6
Dinv37994 Davidia involucrata HOM05D005732 ORTHO05D007062 6.8e-74 281.2 214 71.0
vmacro17018 Vaccinium macrocarpon HOM05D005732 ORTHO05D007062 2.2e-72 276.2 153 95.4
CSS0002541 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.1e-71 273.9 216 71.3
CSS0006657 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.1e-71 273.9 211 72.0
CSS0032474 Camellia sinensis var. sinensis HOM05D005732 ORTHO05D007062 1.1e-71 273.9 216 71.3
Lj5A55G45 Lonicera japonica HOM05D005732 ORTHO05D007062 5.4e-71 271.6 214 68.2
Hma1.2p1_1689F.1_g297591 Hydrangea macrophylla HOM05D005732 ORTHO05D007062 5.9e-70 268.1 215 68.4
Cfa003665 Carpinus fangiana HOM05D005732 ORTHO05D007062 8.6e-69 264.2 203 70.9
Haze_15828 Corylus avellana HOM05D005732 ORTHO05D007062 2.5e-68 262.7 203 70.9
Migut.I00910 Erythranthe guttata HOM05D005732 ORTHO05D007062 2.1e-67 259.6 215 64.7
TAR383G0371 Trochodendron aralioides HOM05D005732 ORTHO05D007062 8.9e-66 254.2 214 64.0
MSTRG.22648 Avicennia marina HOM05D005732 ORTHO05D007062 1.2e-65 253.8 216 64.4
Potri.003G050400 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.5e-65 253.4 211 66.4
CiPaw.01G232900 Carya illinoinensis HOM05D005732 ORTHO05D007062 2.6e-65 252.7 210 67.1
Sabra03G0028400 Salix brachista HOM05D005732 ORTHO05D007062 2.6e-65 252.7 215 64.7
Rhsim12G0202300 Rhododendron simsii HOM05D005732 ORTHO05D007062 7.5e-65 251.1 219 68.9
Cc04_g02710 Coffea canephora HOM05D005732 ORTHO05D007062 3.7e-64 248.8 207 66.2
VMungo0331G0354 Vigna mungo HOM05D005732 ORTHO05D007062 3.7e-64 248.8 211 64.9
TAR626G0582 Trochodendron aralioides HOM05D005732 ORTHO05D007062 6.4e-64 248.1 214 61.7
Phvul.010G146500 Phaseolus vulgaris HOM05D005732 ORTHO05D007062 1.9e-63 246.5 202 64.9
Aqoxy7G01470 Aquilegia oxysepala HOM05D005732 ORTHO05D007062 4.1e-63 245.4 210 61.9
Glyma.07G017000 Glycine max HOM05D005732 ORTHO05D007062 7.0e-63 244.6 203 65.5
Lsat_1_v5_gn_4_99921 Lactuca sativa HOM05D005732 ORTHO05D007062 1.2e-62 243.8 215 60.9
MBI04_g40322_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 3.5e-62 242.3 214 58.4
Manes.04G132400 Manihot esculenta HOM05D005732 ORTHO05D007062 1.7e-61 240.0 207 65.7
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 1.7e-61 240.0 206 63.6
EL10Ac9g22102 Beta vulgaris HOM05D005732 ORTHO05D007062 2.3e-61 239.6 201 63.7
Lalb_Chr04g0262901 Lupinus albus HOM05D005732 ORTHO05D007062 3.0e-61 239.2 205 63.4
SalBow1G6954 Salvia bowleyana HOM05D005732 ORTHO05D007062 3.9e-61 238.8 210 63.3
HanXRQChr09g0275891 Helianthus annuus HOM05D005732 ORTHO05D007062 5.0e-61 238.4 171 67.8
PGR102G2433 Punica granatum HOM05D005732 ORTHO05D007062 5.0e-61 238.4 201 62.2
MSTRG.11037 Avicennia marina HOM05D005732 ORTHO05D007062 1.1e-60 237.3 217 60.8
arahy.Tifrunner.gnm1.ann1.U1FWF5 Arachis hypogaea HOM05D005732 ORTHO05D007062 1.5e-60 236.9 208 62.5
arahy.Tifrunner.gnm1.ann1.Z2G3LM Arachis hypogaea HOM05D005732 ORTHO05D007062 1.5e-60 236.9 208 62.5
DCAR_016197 Daucus carota HOM05D005732 ORTHO05D007062 1.5e-60 236.9 214 61.2
Potri.001G188000 Populus trichocarpa HOM05D005732 ORTHO05D007062 1.5e-60 236.9 208 63.5
SalBow2G2342 Salvia bowleyana HOM05D005732 ORTHO05D007062 1.5e-60 236.9 210 62.9
Nn2g11615 Nelumbo nucifera HOM05D005732 ORTHO05D007062 1.9e-60 236.5 214 60.3
Eucgr.F03064 Eucalyptus grandis HOM05D005732 ORTHO05D007062 3.3e-60 235.7 213 59.6
Medtr8g013900 Medicago truncatula HOM05D005732 ORTHO05D007062 5.6e-60 235.0 203 61.1
HanXRQChr16g0501231 Helianthus annuus HOM05D005732 ORTHO05D007062 2.1e-59 233.0 175 65.1
Lj3g0008110 Lotus japonicus HOM05D005732 ORTHO05D007062 2.8e-59 232.6 205 60.0
AUR62022181 Chenopodium quinoa HOM05D005732 ORTHO05D007062 4.7e-59 231.9 196 64.8
PSO173G0088 Papaver somniferum HOM05D005732 ORTHO05D007062 4.7e-59 231.9 214 57.0
TWI75G0681 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 6.2e-59 231.5 201 63.2
AUR62031884 Chenopodium quinoa HOM05D005732 ORTHO05D007062 1.4e-58 230.3 216 62.0
Psat4g197440 Pisum sativum HOM05D005732 ORTHO05D007062 1.4e-58 230.3 205 57.6
GSVIVG01017014001 Vitis vinifera HOM05D005732 ORTHO05D007062 1.8e-58 229.9 147 78.9
Hund06653 Selenicereus undatus HOM05D005732 ORTHO05D007062 2.3e-58 229.6 196 61.2
Manes.11G035100 Manihot esculenta HOM05D005732 ORTHO05D007062 3.1e-58 229.2 208 62.0
TWI18G0404 Tripterygium wilfordii HOM05D005732 ORTHO05D007062 4.0e-58 228.8 203 63.5
PSO832G1217 Papaver somniferum HOM05D005732 ORTHO05D007062 1.2e-57 227.3 218 57.8
ECA247G0174 Erigeron canadensis HOM05D005732 ORTHO05D007062 7.5e-57 224.6 221 53.8
MD09G1205900 Malus domestica HOM05D005732 ORTHO05D007062 1.3e-56 223.8 193 61.7
Prupe.3G061300 Prunus persica HOM05D005732 ORTHO05D007062 1.3e-56 223.8 191 62.8
RcHm_v2.0_Chr2g0140051 Rosa chinensis HOM05D005732 ORTHO05D007062 1.3e-56 223.8 197 60.4
FAN05G5290 Fragaria x ananassa HOM05D005732 ORTHO05D007062 4.9e-56 221.9 205 59.5
CANSAT56G1056 Cannabis sativa HOM05D005732 ORTHO05D007062 8.3e-56 221.1 216 56.9
FAN02G4216 Fragaria x ananassa HOM05D005732 ORTHO05D007062 8.3e-56 221.1 198 59.6
Sabra01G0152800 Salix brachista HOM05D005732 ORTHO05D007062 1.4e-55 220.3 224 57.1
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 1.9e-55 219.9 173 64.2
Thecc.06G097400 Theobroma cacao HOM05D005732 ORTHO05D007062 3.2e-55 219.2 207 59.4
QL05p020542 Quercus lobata HOM05D005732 ORTHO05D007062 7.1e-55 218.0 265 50.9
FAN14G0018 Fragaria x ananassa HOM05D005732 ORTHO05D007062 9.2e-55 217.6 201 57.7
Sc15g0001950 Simmondsia chinensis HOM05D005732 ORTHO05D007062 1.6e-54 216.9 162 68.5
Lsat_1_v5_gn_1_34600 Lactuca sativa HOM05D005732 ORTHO05D007062 2.1e-54 216.5 217 53.9
FvH4_6g32160 Fragaria vesca HOM05D005732 ORTHO05D007062 2.7e-54 216.1 201 57.7
DCAR_026348 Daucus carota HOM05D005732 ORTHO05D007062 6.0e-54 214.9 160 71.2
HanXRQChr02g0032191 Helianthus annuus HOM05D005732 ORTHO05D007062 6.0e-54 214.9 171 63.2
Solyc03g120870.3 Solanum lycopersicum HOM05D005732 ORTHO05D007062 7.8e-54 214.5 211 55.5
Sopen03g039690 Solanum pennellii HOM05D005732 ORTHO05D007062 3.9e-53 212.2 211 55.5
CsaV3_7G035420 Cucumis sativus L. HOM05D005732 ORTHO05D007062 8.6e-53 211.1 212 53.3
CiPaw.02G147000 Carya illinoinensis HOM05D005732 ORTHO05D007062 1.1e-52 210.7 204 59.3
Duzib192G0605 Durio zibethinus HOM05D005732 ORTHO05D007062 1.5e-52 210.3 167 68.3
FAN09G2308 Fragaria x ananassa HOM05D005732 ORTHO05D007062 1.9e-52 209.9 167 65.9
Gohir.A02G118700 Gossypium hirsutum HOM05D005732 ORTHO05D007062 1.9e-52 209.9 207 58.0
Cpa.g.c29422 Carica papaya HOM05D005732 ORTHO05D007062 7.3e-52 208.0 209 56.0
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 3.6e-51 205.7 206 57.8
PGSC0003DMG400002535 Solanum tuberosum HOM05D005732 ORTHO05D007062 3.6e-51 205.7 211 54.0
MELO3C024451.2 Cucumis melo HOM05D005732 ORTHO05D007062 4.7e-51 205.3 212 51.9
Gorai.003G063300 Gossypium raimondii HOM05D005732 ORTHO05D007062 4.7e-51 205.3 207 57.0
Sed0001710 Sechium edule HOM05D005732 ORTHO05D007062 6.2e-51 204.9 212 51.4
Lj9A511T51 Lonicera japonica HOM05D005732 ORTHO05D007062 1.8e-50 203.4 247 51.4
Ciclev10026574m.g Citrus clementina HOM05D005732 ORTHO05D007062 2.3e-50 203.0 169 61.5
Peaxi162Scf00038g00842 Petunia axillaris HOM05D005732 ORTHO05D007062 2.4e-47 193.0 216 53.2
TPR.G35018 Trifolium pratense HOM05D005732 ORTHO05D007062 7.1e-47 191.4 172 57.6
Gohir.D03G059300 Gossypium hirsutum HOM05D005732 ORTHO05D007062 2.7e-46 189.5 207 54.1
Os01g0725400 Oryza sativa ssp. japonica HOM05D005732 ORTHO05D007062 1.3e-45 187.2 164 54.9
THA.LOC104817966 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 3.9e-45 185.7 168 57.7
Ca_23241_v3 Cicer arietinum L. HOM05D005732 ORTHO05D007062 3.3e-44 182.6 203 49.3
MBI19_g26309_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 3.6e-43 179.1 212 46.2
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.4e-42 177.2 117 76.9
unitig_46.g18459 Utricularia gibba HOM05D005732 ORTHO05D007062 1.4e-42 177.2 160 59.4
Atru.chr1.3497 Acer truncatum HOM05D005732 ORTHO05D007062 5.2e-42 175.3 215 49.3
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 5.8e-41 171.8 179 48.6
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 5.8e-41 171.8 179 48.6
BcaC05g28895 Brassica carinata HOM05D005732 ORTHO05D007062 2.2e-40 169.9 168 50.6
BcaB06g25723 Brassica carinata HOM05D005732 ORTHO05D007062 2.9e-40 169.5 181 47.5
Thhalv10021518m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 2.9e-40 169.5 179 49.2
Sp3g14670 Schrenkiella parvula HOM05D005732 ORTHO05D007062 2.9e-40 169.5 179 49.2
THA.LOC104813551 Tarenaya hassleriana HOM05D005732 ORTHO05D007062 2.9e-40 169.5 147 57.8
Duzib160G0019 Durio zibethinus HOM05D005732 ORTHO05D007062 6.4e-40 168.3 128 67.2
AL3G29050 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 3.2e-39 166.0 168 50.6
BcaB04g18894 Brassica carinata HOM05D005732 ORTHO05D007062 3.2e-39 166.0 181 47.5
Carub.0003s1605 Capsella rubella HOM05D005732 ORTHO05D007062 4.2e-39 165.6 174 49.4
BraA05t22147Z Brassica rapa HOM05D005732 ORTHO05D007062 1.2e-38 164.1 173 46.8
BolC3t17024H Brassica oleracea HOM05D005732 ORTHO05D007062 1.6e-38 163.7 182 45.1
BcaC01g03830 Brassica carinata HOM05D005732 ORTHO05D007062 2.7e-38 162.9 182 44.5
BolC3t17097H Brassica oleracea HOM05D005732 ORTHO05D007062 2.7e-38 162.9 182 44.5
BraA03t13125Z Brassica rapa HOM05D005732 ORTHO05D007062 2.7e-38 162.9 182 45.6
MBI04_g44953_MAGBIO Magnolia biondii HOM05D005732 ORTHO05D007062 2.7e-38 162.9 110 70.9
A03p39750 Brassica napus HOM05D005732 ORTHO05D007062 7.8e-38 161.4 182 45.6
AT3G16300 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.0e-37 161.0 209 43.5
Prupe.3G065500 Prunus persica HOM05D005732 ORTHO05D007062 1.0e-37 161.0 114 71.9
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.3e-37 160.6 165 51.5
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 6.6e-37 158.3 171 47.4
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 1.1e-36 157.5 177 48.0
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 1.5e-36 157.1 165 47.9
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 2.5e-36 156.4 172 45.9
Lj9C524T15 Lonicera japonica HOM05D005732 ORTHO05D007062 3.3e-36 156.0 213 47.9
C03p48190 Brassica napus HOM05D005732 ORTHO05D007062 4.3e-36 155.6 169 45.0
CARHR091510 Cardamine hirsuta HOM05D005732 ORTHO05D007062 7.3e-36 154.8 203 41.4
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 2.8e-35 152.9 167 46.7
Thhalv10019180m.g Eutrema salsugineum HOM05D005732 ORTHO05D007062 4.0e-34 149.1 161 47.2
C06p28700 Brassica napus HOM05D005732 ORTHO05D007062 5.3e-34 148.7 172 44.2
A07p26310 Brassica napus HOM05D005732 ORTHO05D007062 1.2e-33 147.5 161 46.6
BolC6t38039H Brassica oleracea HOM05D005732 ORTHO05D007062 1.2e-33 147.5 161 46.6
BraA07t30275Z Brassica rapa HOM05D005732 ORTHO05D007062 1.2e-33 147.5 161 46.6
CDE02G4152 Ceratophyllum demersum HOM05D005732 ORTHO05D007062 1.5e-25 120.6 208 35.6
ATR0705G122 Amborella trichopoda HOM05D005732 ORTHO05D007062 1.7e-24 117.1 145 48.3
Dinv30452 Davidia involucrata HOM05D005732 ORTHO05D007062 1.7e-24 117.1 119 59.7
ClCG09G000040 Citrullus lanatus HOM05D005732 ORTHO05D007062 3.5e-22 109.4 96 56.2
ATR0705G087 Amborella trichopoda HOM05D005732 ORTHO05D007062 2.8e-19 99.8 66 72.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.0e-13 79.7 96 47.9
CARHR074750 Cardamine hirsuta HOM05D005732 ORTHO05D007062 1.5e-12 77.4 75 53.3
Sc15g0002000 Simmondsia chinensis HOM05D005732 ORTHO05D007062 2.0e-09 67.0 43 74.4
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 2.9e-08 63.2 162 27.8
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 2.5e-07 60.1 162 27.8
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 2.5e-07 60.1 181 30.4
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 2.5e-07 60.1 170 31.2
TAR622G0113 Trochodendron aralioides HOM05D003184 ORTHO05D000394 3.2e-07 59.7 166 26.5
SMO367G0421 Selaginella moellendorffii HOM05D002464 ORTHO05D002530 4.2e-07 59.3 112 30.4
CARHR049040 Cardamine hirsuta HOM05D005732 ORTHO05D007062 5.5e-07 58.9 40 65.0
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 5.5e-07 58.9 161 26.1
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 7.2e-07 58.5 162 25.9
ATR0582G194 Amborella trichopoda HOM05D003184 ORTHO05D000394 9.3e-07 58.2 150 30.7
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 9.3e-07 58.2 162 25.9
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 9.3e-07 58.2 162 25.9
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 9.3e-07 58.2 162 25.9
Oeu026200.1 Olea europaea HOM05D001151 ORTHO05D001504 9.3e-07 58.2 204 27.0
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 1.2e-06 57.8 166 26.5
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.6e-06 57.4 162 25.9
SEGI_07260 Sequoiadendron giganteum HOM05D002464 ORTHO05D002530 2.1e-06 57.0 156 26.3
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 2.7e-06 56.6 181 30.4
HPP92_001486 Vanilla planifolia HOM05D005509 ORTHO05D006411 2.7e-06 56.6 187 25.1
Actinidia23302 Actinidia chinensis HOM05D003184 ORTHO05D000394 3.6e-06 56.2 156 28.2
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 3.6e-06 56.2 162 25.3
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 3.6e-06 56.2 163 26.4
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 4.6e-06 55.8 167 26.3
CsaV3_5G008080 Cucumis sativus L. HOM05D005509 ORTHO05D006411 7.9e-06 55.1 195 27.2
Eucgr.J00034 Eucalyptus grandis HOM05D005509 ORTHO05D006411 7.9e-06 55.1 167 31.7
SEGI_26621 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 7.9e-06 55.1 133 27.8


User provided reference genes

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