Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16706 Vaccinium macrocarpon HOM05D002443 ORTHO05D002674 3.0e-207 724.9 366 100.0
vmacro16668 Vaccinium macrocarpon HOM05D001599 ORTHO05D005517 6.0e-14 82.8 57 71.9
Rhsim09G0186900 Rhododendron simsii HOM05D002443 ORTHO05D002674 4.3e-12 76.6 40 82.5
vmacro03182 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 4.3e-12 76.6 40 95.0
ClCG04G006140 Citrullus lanatus HOM05D002443 ORTHO05D002674 1.3e-08 65.1 32 78.1
CANSAT56G2340 Cannabis sativa HOM05D002443 ORTHO05D002674 1.7e-08 64.7 30 83.3
Cfa016998 Carpinus fangiana HOM05D002443 ORTHO05D002674 2.2e-08 64.3 30 83.3
CiPaw.09G223600 Carya illinoinensis HOM05D002443 ORTHO05D002674 2.2e-08 64.3 30 83.3
CiPaw.10G166900 Carya illinoinensis HOM05D002443 ORTHO05D002674 2.2e-08 64.3 30 83.3
Dinv16937 Davidia involucrata HOM05D002443 ORTHO05D002674 2.2e-08 64.3 30 86.7
QL07p031356 Quercus lobata HOM05D002443 ORTHO05D002674 2.2e-08 64.3 30 83.3
CSS0021161 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 2.9e-08 63.9 30 83.3
Manes.08G167800 Manihot esculenta HOM05D002443 ORTHO05D002674 3.8e-08 63.5 30 83.3
Potri.006G111800 Populus trichocarpa HOM05D002443 ORTHO05D002674 3.8e-08 63.5 30 83.3
Potri.016G141200 Populus trichocarpa HOM05D002443 ORTHO05D002674 3.8e-08 63.5 30 83.3
Sabra04G0157600 Salix brachista HOM05D002443 ORTHO05D002674 3.8e-08 63.5 30 83.3
Sabra06G0087000 Salix brachista HOM05D002443 ORTHO05D002674 3.8e-08 63.5 30 83.3
Sabra06G0087100 Salix brachista HOM05D002443 ORTHO05D002674 3.8e-08 63.5 30 83.3
Rhsim05G0233700 Rhododendron simsii HOM05D002443 ORTHO05D002674 4.9e-08 63.2 30 83.3
MELO3C025260.2 Cucumis melo HOM05D002443 ORTHO05D002674 6.4e-08 62.8 30 83.3
CsaV3_4G027420 Cucumis sativus L. HOM05D002443 ORTHO05D002674 6.4e-08 62.8 30 83.3
FvH4_6g09390 Fragaria vesca HOM05D002443 ORTHO05D002674 6.4e-08 62.8 30 80.0
FAN09G2118 Fragaria x ananassa HOM05D002443 ORTHO05D002674 6.4e-08 62.8 30 80.0
FAN14G1995 Fragaria x ananassa HOM05D002443 ORTHO05D002674 6.4e-08 62.8 30 80.0
Hma1.2p1_0264F.1_g105830 Hydrangea macrophylla HOM05D002443 ORTHO05D002674 6.4e-08 62.8 30 86.7
MBI03_g17683_MAGBIO Magnolia biondii HOM05D002443 ORTHO05D002674 6.4e-08 62.8 30 80.0
MBI03_g38730_MAGBIO Magnolia biondii HOM05D002443 ORTHO05D002674 6.4e-08 62.8 30 80.0
Nn5g26787 Nelumbo nucifera HOM05D002443 ORTHO05D002674 6.4e-08 62.8 30 80.0
CSS0032994 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 8.4e-08 62.4 30 80.0
Nitab4.5_0001629g0020 Nicotiana tabacum HOM05D002443 ORTHO05D002674 8.4e-08 62.4 30 80.0
Nitab4.5_0003037g0160 Nicotiana tabacum HOM05D002443 ORTHO05D002674 8.4e-08 62.4 30 80.0
Peaxi162Scf00374g00417 Petunia axillaris HOM05D002443 ORTHO05D002674 8.4e-08 62.4 30 80.0
Prupe.6G298000 Prunus persica HOM05D002443 ORTHO05D002674 8.4e-08 62.4 30 80.0
RcHm_v2.0_Chr3g0459771 Rosa chinensis HOM05D002443 ORTHO05D002674 8.4e-08 62.4 30 76.7
Sed0008516 Sechium edule HOM05D002443 ORTHO05D002674 8.4e-08 62.4 30 83.3
Actinidia01015 Actinidia chinensis HOM05D002443 ORTHO05D002674 1.1e-07 62.0 29 86.2
CSS0010803 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.1e-07 62.0 29 93.1
CSS0037181 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.1e-07 62.0 29 93.1
AUR62029804 Chenopodium quinoa HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 80.0
Haze_21206 Corylus avellana HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 80.0
FvH4_7g26260 Fragaria vesca HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 83.3
FAN01G1329 Fragaria x ananassa HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 83.3
FAN06G3845 Fragaria x ananassa HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 83.3
FAN10G3107 Fragaria x ananassa HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 83.3
Lsat_1_v5_gn_8_98940 Lactuca sativa HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 80.0
Manes.09G121400 Manihot esculenta HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 80.0
Phvul.008G078900 Phaseolus vulgaris HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 80.0
RcHm_v2.0_Chr1g0372711 Rosa chinensis HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 83.3
Hund03685 Selenicereus undatus HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 76.7
VMungo1383G2884 Vigna mungo HOM05D002443 ORTHO05D002674 1.1e-07 62.0 30 80.0
Atru.chr8.61 Acer truncatum HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
CSS0003572 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.4e-07 61.6 29 82.8
CSS0033513 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.4e-07 61.6 29 82.8
AUR62006452 Chenopodium quinoa HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
Ciclev10011668m.g Citrus clementina HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
COL.COLO4_19491 Corchorus olitorius HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 80.0
Dinv28756 Davidia involucrata HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
Dinv34510 Davidia involucrata HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 83.3
FAN02G2543 Fragaria x ananassa HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 80.0
FAN05G4000 Fragaria x ananassa HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 80.0
Glyma.18G217900 Glycine max HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 80.0
HanXRQChr10g0292891 Helianthus annuus HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
Lj1g0010348 Lotus japonicus HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
MD12G1193700 Malus domestica HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 80.0
Medtr7g074140 Medicago truncatula HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
Psat3g117720 Pisum sativum HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
TPR.G24321 Trifolium pratense HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
TWI74G1674 Tripterygium wilfordii HOM05D002443 ORTHO05D002674 1.4e-07 61.6 30 76.7
ATR1127G140 Amborella trichopoda HOM05D002443 ORTHO05D002674 1.9e-07 61.2 30 80.0
CSS0034554 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.9e-07 61.2 30 80.0
CSS0042326 Camellia sinensis var. sinensis HOM05D002443 ORTHO05D002674 1.9e-07 61.2 30 80.0
Cpa.g.sc0.62 Carica papaya HOM05D002443 ORTHO05D002674 1.9e-07 61.2 30 73.3
COL.COLO4_06161 Corchorus olitorius HOM05D002443 ORTHO05D002674 1.9e-07 61.2 29 79.3
Duzib151G0873 Durio zibethinus HOM05D002443 ORTHO05D002674 1.9e-07 61.2 29 79.3
Oeu064010.1 Olea europaea HOM05D002443 ORTHO05D002674 1.9e-07 61.2 32 75.0
Peaxi162Scf00073g02129 Petunia axillaris HOM05D002443 ORTHO05D002674 1.9e-07 61.2 30 80.0
Thecc.04G146400 Theobroma cacao HOM05D002443 ORTHO05D002674 1.9e-07 61.2 29 79.3
TAR633G0322 Trochodendron aralioides HOM05D002443 ORTHO05D002674 1.9e-07 61.2 31 74.2
Ah.15g089800 Amaranthus hybridus HOM05D002443 ORTHO05D002674 2.4e-07 60.8 30 76.7
EL10Ac7g17140 Beta vulgaris HOM05D002443 ORTHO05D002674 2.4e-07 60.8 30 76.7
Duzib168G0789 Durio zibethinus HOM05D002443 ORTHO05D002674 2.4e-07 60.8 57 49.1
Lsat_1_v5_gn_8_11301 Lactuca sativa HOM05D002443 ORTHO05D002674 2.4e-07 60.8 30 83.3
Lj1A969G91 Lonicera japonica HOM05D002443 ORTHO05D002674 2.4e-07 60.8 30 83.3
PSO339G5025 Papaver somniferum HOM05D002443 ORTHO05D002674 2.4e-07 60.8 30 76.7
PSO384G3147 Papaver somniferum HOM05D002443 ORTHO05D002674 2.4e-07 60.8 30 76.7
Peaxi162Scf00304g00833 Petunia axillaris HOM05D002443 ORTHO05D002674 2.4e-07 60.8 30 80.0
PGR004G1715 Punica granatum HOM05D002443 ORTHO05D002674 2.4e-07 60.8 30 80.0
Sc20g0007270 Simmondsia chinensis HOM05D002443 ORTHO05D002674 2.4e-07 60.8 30 80.0
Actinidia07778 Actinidia chinensis HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 83.3
arahy.Tifrunner.gnm1.ann1.0P59UU Arachis hypogaea HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 73.3
arahy.Tifrunner.gnm1.ann1.ZI5WB6 Arachis hypogaea HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 73.3
Cc02_g05080 Coffea canephora HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 80.0
Duzib114G0182 Durio zibethinus HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 80.0
ECA232G2945 Erigeron canadensis HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 80.0
ECA233G4223 Erigeron canadensis HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 83.3
Nitab4.5_0000171g0360 Nicotiana tabacum HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 80.0
vmacro20395 Vaccinium macrocarpon HOM05D002443 ORTHO05D002674 3.2e-07 60.5 29 82.8
HPP92_007552 Vanilla planifolia HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 76.7
HPP92_028107 Vanilla planifolia HOM05D002443 ORTHO05D002674 3.2e-07 60.5 30 76.7
Aqoxy4G03311 Aquilegia oxysepala HOM05D002443 ORTHO05D002674 4.2e-07 60.1 30 76.7
Cfa001186 Carpinus fangiana HOM05D002443 ORTHO05D002674 4.2e-07 60.1 30 76.7
Haze_17379 Corylus avellana HOM05D002443 ORTHO05D002674 4.2e-07 60.1 30 76.7
Gohir.A02G000900 Gossypium hirsutum HOM05D002443 ORTHO05D002674 4.2e-07 60.1 29 79.3
Gohir.D02G001200 Gossypium hirsutum HOM05D002443 ORTHO05D002674 4.2e-07 60.1 29 79.3
Gorai.005G001700 Gossypium raimondii HOM05D002443 ORTHO05D002674 4.2e-07 60.1 29 79.3
HanXRQChr08g0221701 Helianthus annuus HOM05D002443 ORTHO05D002674 4.2e-07 60.1 30 80.0
HanXRQChr09g0252401 Helianthus annuus HOM05D002443 ORTHO05D002674 4.2e-07 60.1 30 76.7
HanXRQChr15g0493621 Helianthus annuus HOM05D002443 ORTHO05D002674 4.2e-07 60.1 30 76.7
Lj2A56T93 Lonicera japonica HOM05D002443 ORTHO05D002674 4.2e-07 60.1 30 73.3
Prupe.2G266800 Prunus persica HOM05D002443 ORTHO05D002674 4.2e-07 60.1 30 80.0
TAR623G1570 Trochodendron aralioides HOM05D002443 ORTHO05D002674 4.2e-07 60.1 30 70.0
GSVIVG01029861001 Vitis vinifera HOM05D002443 ORTHO05D002674 4.2e-07 60.1 29 82.8
Atru.chr12.211 Acer truncatum HOM05D002443 ORTHO05D002674 5.4e-07 59.7 29 79.3
MSTRG.18927 Avicennia marina HOM05D002443 ORTHO05D002674 5.4e-07 59.7 29 75.9
Duzib128G1256 Durio zibethinus HOM05D002443 ORTHO05D002674 5.4e-07 59.7 48 47.9
Migut.J00010 Erythranthe guttata HOM05D002443 ORTHO05D002674 5.4e-07 59.7 30 73.3
TAR636G2845 Trochodendron aralioides HOM05D002443 ORTHO05D002674 5.4e-07 59.7 30 80.0
GSVIVG01024532001 Vitis vinifera HOM05D002443 ORTHO05D002674 5.4e-07 59.7 30 73.3
Aa31LG5G11330 Aethionema arabicum HOM05D002443 ORTHO05D002674 7.1e-07 59.3 30 76.7
AL6G10070 Arabidopsis lyrata HOM05D002443 ORTHO05D002674 7.1e-07 59.3 30 76.7
AT5G01960 Arabidopsis thaliana HOM05D002443 ORTHO05D002674 7.1e-07 59.3 30 76.7
Carub.0024s0008 Capsella rubella HOM05D002443 ORTHO05D002674 7.1e-07 59.3 30 76.7
CARHR212310 Cardamine hirsuta HOM05D002443 ORTHO05D002674 7.1e-07 59.3 30 76.7
ClCG07G005290 Citrullus lanatus HOM05D002443 ORTHO05D002674 7.1e-07 59.3 29 79.3
MELO3C020174.2 Cucumis melo HOM05D002443 ORTHO05D002674 7.1e-07 59.3 66 50.0
CsaV3_5G011140 Cucumis sativus L. HOM05D002443 ORTHO05D002674 7.1e-07 59.3 66 50.0
Migut.F00563 Erythranthe guttata HOM05D002443 ORTHO05D002674 7.1e-07 59.3 30 73.3
Oeu007818.1 Olea europaea HOM05D002443 ORTHO05D002674 7.1e-07 59.3 29 75.9
Sp6g41200 Schrenkiella parvula HOM05D002443 ORTHO05D002674 7.1e-07 59.3 30 76.7
Sed0016641 Sechium edule HOM05D002443 ORTHO05D002674 7.1e-07 59.3 29 79.3
Solyc03g095450.3 Solanum lycopersicum HOM05D002443 ORTHO05D002674 7.1e-07 59.3 29 79.3
Cc06_g00180 Coffea canephora HOM05D002443 ORTHO05D002674 9.3e-07 58.9 29 79.3
HanXRQChr05g0144251 Helianthus annuus HOM05D002443 ORTHO05D002674 9.3e-07 58.9 30 76.7
MD04G1178100 Malus domestica HOM05D002443 ORTHO05D002674 9.3e-07 58.9 30 73.3
TWI53G1036 Tripterygium wilfordii HOM05D002443 ORTHO05D002674 9.3e-07 58.9 30 73.3
BcaB01g05496 Brassica carinata HOM05D002443 ORTHO05D002674 1.2e-06 58.5 30 76.7
A03p04790 Brassica napus HOM05D002443 ORTHO05D002674 1.2e-06 58.5 30 76.7
C03p05500 Brassica napus HOM05D002443 ORTHO05D002674 1.2e-06 58.5 30 76.7
BolC3t13060H Brassica oleracea HOM05D002443 ORTHO05D002674 1.2e-06 58.5 30 76.7
BraA03t09819Z Brassica rapa HOM05D002443 ORTHO05D002674 1.2e-06 58.5 30 76.7
Ca_07795_v3 Cicer arietinum L. HOM05D002443 ORTHO05D002674 1.2e-06 58.5 30 76.7
Glyma.06G140600 Glycine max HOM05D002443 ORTHO05D002674 1.2e-06 58.5 30 80.0
Thecc.10G186700 Theobroma cacao HOM05D002443 ORTHO05D002674 1.2e-06 58.5 52 55.8
CDE06G0435 Ceratophyllum demersum HOM05D002443 ORTHO05D002674 1.6e-06 58.2 29 72.4
DCAR_014657 Daucus carota HOM05D002443 ORTHO05D002674 1.6e-06 58.2 30 76.7
Lsat_1_v5_gn_9_60380 Lactuca sativa HOM05D002443 ORTHO05D002674 1.6e-06 58.2 30 76.7
MD07G1237600 Malus domestica HOM05D002443 ORTHO05D002674 1.6e-06 58.2 51 52.9
Nitab4.5_0000071g0250 Nicotiana tabacum HOM05D002443 ORTHO05D002674 1.6e-06 58.2 28 82.1
Nitab4.5_0005479g0040 Nicotiana tabacum HOM05D002443 ORTHO05D002674 1.6e-06 58.2 28 82.1
Solyc10g074810.2 Solanum lycopersicum HOM05D002443 ORTHO05D002674 1.6e-06 58.2 30 76.7
Sopen10g027300 Solanum pennellii HOM05D002443 ORTHO05D002674 1.6e-06 58.2 30 76.7
PGSC0003DMG400027593 Solanum tuberosum HOM05D002443 ORTHO05D002674 1.6e-06 58.2 30 73.3
PGSC0003DMG400027698 Solanum tuberosum HOM05D002443 ORTHO05D002674 1.6e-06 58.2 30 76.7
TAR369G0671 Trochodendron aralioides HOM05D002443 ORTHO05D002674 1.6e-06 58.2 30 70.0
DCAR_004786 Daucus carota HOM05D002443 ORTHO05D002674 2.1e-06 57.8 30 80.0
Dinv21867 Davidia involucrata HOM05D002443 ORTHO05D002674 2.1e-06 57.8 30 73.3
Lj8A51G58 Lonicera japonica HOM05D002443 ORTHO05D002674 2.1e-06 57.8 29 79.3
Phvul.009G041900 Phaseolus vulgaris HOM05D002443 ORTHO05D002674 2.1e-06 57.8 30 76.7
TPR.G13961 Trifolium pratense HOM05D002443 ORTHO05D002674 2.1e-06 57.8 30 76.7
MSTRG.27250 Avicennia marina HOM05D002443 ORTHO05D002674 2.7e-06 57.4 28 71.4
Ca_16851_v3 Cicer arietinum L. HOM05D002443 ORTHO05D002674 2.7e-06 57.4 30 76.7
Ca_29499_v3 Cicer arietinum L. HOM05D002443 ORTHO05D002674 2.7e-06 57.4 30 76.7
Ciclev10031602m.g Citrus clementina HOM05D002443 ORTHO05D002674 2.7e-06 57.4 30 66.7
Eucgr.K01301 Eucalyptus grandis HOM05D002443 ORTHO05D002674 2.7e-06 57.4 30 76.7
MD01G1171400 Malus domestica HOM05D002443 ORTHO05D002674 2.7e-06 57.4 30 76.7
Solyc06g048520.3 Solanum lycopersicum HOM05D002443 ORTHO05D002674 2.7e-06 57.4 28 78.6
Sopen06g014680 Solanum pennellii HOM05D002443 ORTHO05D002674 2.7e-06 57.4 28 78.6
arahy.Tifrunner.gnm1.ann1.7MLU0G Arachis hypogaea HOM05D002443 ORTHO05D002674 3.5e-06 57.0 45 53.3
Glyma.04G224200 Glycine max HOM05D002443 ORTHO05D002674 3.5e-06 57.0 30 76.7
THA.LOC104816151 Tarenaya hassleriana HOM05D002443 ORTHO05D002674 3.5e-06 57.0 28 78.6
VMungo1309G1060 Vigna mungo HOM05D002443 ORTHO05D002674 3.5e-06 57.0 30 76.7
arahy.Tifrunner.gnm1.ann1.TI4L00 Arachis hypogaea HOM05D002443 ORTHO05D002674 4.6e-06 56.6 45 53.3
CANSAT54G1047 Cannabis sativa HOM05D002443 ORTHO05D002674 4.6e-06 56.6 30 66.7
CDE07G0573 Ceratophyllum demersum HOM05D002443 ORTHO05D002674 4.6e-06 56.6 29 69.0
DCAR_018049 Daucus carota HOM05D003152 ORTHO05D002674 4.6e-06 56.6 29 79.3
Oeu008101.1 Olea europaea HOM05D002443 ORTHO05D002674 4.6e-06 56.6 30 70.0
Lj1g0009573 Lotus japonicus HOM05D002443 ORTHO05D002674 6.0e-06 56.2 29 79.3
Os05g0316000 Oryza sativa ssp. japonica HOM05D002443 ORTHO05D002674 6.0e-06 56.2 30 73.3
Zm00001eb285000 Zea mays HOM05D002443 ORTHO05D002674 6.0e-06 56.2 30 76.7
ECA238G3556 Erigeron canadensis HOM05D002443 ORTHO05D002674 7.9e-06 55.8 30 73.3
Eucgr.G03167 Eucalyptus grandis HOM05D002443 ORTHO05D002674 7.9e-06 55.8 30 70.0
Thhalv10013616m.g Eutrema salsugineum HOM05D002443 ORTHO05D002674 7.9e-06 55.8 30 73.3
SEGI_07400 Sequoiadendron giganteum HOM05D002443 ORTHO05D002674 7.9e-06 55.8 30 70.0


User provided reference genes

Program Settings