Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 9.3e-288 993.0 572 100.0
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 3.9e-169 599.0 600 60.7
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 8.7e-169 597.8 588 67.0
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 7.3e-168 594.7 587 67.0
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 1.8e-161 573.5 576 67.4
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 6.7e-153 545.0 577 64.0
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 6.9e-150 535.0 576 63.4
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 5.8e-149 531.9 578 63.1
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.4e-147 527.3 577 60.7
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 8.2e-143 511.5 576 58.0
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.7e-138 496.5 577 57.0
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 1.1e-134 484.6 586 58.5
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 2.4e-134 483.4 590 56.6
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 1.2e-133 481.1 556 58.8
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.0e-133 480.3 591 57.2
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 4.5e-133 479.2 603 57.7
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.5e-132 474.9 581 56.6
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.4e-131 474.2 590 56.8
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.9e-131 473.8 578 58.0
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 3.2e-131 473.0 578 58.8
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 2.1e-130 470.3 547 58.7
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 2.0e-128 463.8 567 51.9
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 2.0e-128 463.8 584 57.7
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 5.7e-128 462.2 576 56.4
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.3e-127 461.1 600 56.3
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 2.8e-127 459.9 548 53.3
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 3.7e-127 459.5 559 60.1
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 1.1e-126 458.0 580 53.6
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 5.3e-126 455.7 581 50.9
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 7.0e-126 455.3 572 55.2
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 9.1e-126 454.9 576 54.7
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.2e-125 454.5 583 56.8
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 1.2e-125 454.5 573 55.5
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.5e-125 454.1 584 55.5
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 4.5e-125 452.6 572 54.2
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 5.9e-125 452.2 587 53.5
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 7.7e-125 451.8 591 56.0
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 1.3e-124 451.1 585 54.7
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.2e-124 450.3 636 52.2
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.2e-124 450.3 589 56.7
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 3.8e-124 449.5 594 54.2
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 6.5e-124 448.7 564 56.0
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 8.5e-124 448.4 592 54.4
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.5e-123 447.6 573 56.4
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.9e-123 447.2 578 53.6
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 1.9e-123 447.2 624 54.2
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 3.2e-123 446.4 561 56.5
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 5.5e-123 445.7 593 54.0
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 5.5e-123 445.7 624 52.9
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 7.2e-123 445.3 604 53.3
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.2e-122 444.5 559 56.4
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 1.2e-122 444.5 595 53.8
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.2e-122 444.5 605 53.6
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 4.7e-122 442.6 591 54.0
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 8.0e-122 441.8 568 54.4
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.0e-121 441.4 593 55.5
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.4e-121 441.0 567 55.4
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.4e-121 441.0 573 54.1
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 3.9e-121 439.5 561 56.7
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 3.9e-121 439.5 557 55.7
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 3.9e-121 439.5 579 51.1
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 3.9e-121 439.5 590 55.3
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 5.2e-121 439.1 570 52.6
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 6.7e-121 438.7 559 54.9
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 6.7e-121 438.7 574 53.0
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 8.8e-121 438.3 563 55.8
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 8.8e-121 438.3 578 53.8
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 2.0e-120 437.2 576 54.2
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 3.3e-120 436.4 581 56.3
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 7.4e-120 435.3 590 56.4
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.3e-119 434.5 593 53.1
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 3.7e-119 433.0 581 54.7
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 1.8e-118 430.6 574 53.5
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 4.1e-118 429.5 573 55.1
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 1.0e-116 424.9 587 48.4
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 6.5e-116 422.2 590 51.4
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 6.5e-116 422.2 616 51.0
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 8.5e-116 421.8 574 53.0
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 8.5e-116 421.8 584 47.4
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 1.1e-115 421.4 580 55.0
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 5.5e-115 419.1 576 52.8
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 9.4e-115 418.3 602 52.7
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 2.1e-114 417.2 582 50.7
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 6.1e-114 415.6 592 51.9
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.0e-113 414.8 558 53.0
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.8e-113 414.1 571 54.1
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 3.0e-113 413.3 588 49.8
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 2.0e-112 410.6 562 52.1
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.4e-110 404.4 559 53.7
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 3.1e-110 403.3 602 50.8
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 9.1e-110 401.7 575 52.2
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.5e-109 399.8 570 51.9
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 4.5e-109 399.4 574 46.5
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 8.5e-108 395.2 531 47.1
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.5e-107 394.4 548 45.8
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.5e-107 392.5 556 54.7
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 2.1e-106 390.6 566 49.3
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.7e-106 389.4 570 50.9
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.4e-105 387.9 569 50.6
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.4e-105 387.9 571 52.7
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 3.0e-105 386.7 566 50.5
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 2.0e-104 384.0 560 53.8
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.3e-103 381.3 564 48.9
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 7.7e-101 372.1 575 51.0
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 3.8e-100 369.8 510 52.4
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.4e-97 361.3 569 49.4
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 3.0e-97 360.1 572 46.5
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.6e-92 342.4 295 67.1
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.8e-89 334.3 623 46.2
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.3e-84 318.2 387 59.9
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 4.3e-83 313.2 580 44.7
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 4.0e-81 306.6 404 53.0
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 7.5e-80 302.4 579 43.9
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 3.6e-74 283.5 558 38.2
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 8.3e-71 272.3 562 39.7
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 9.2e-70 268.9 529 40.5
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 5.6e-67 259.6 512 38.1
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 2.2e-63 247.7 562 34.7
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 4.3e-59 233.4 173 72.3
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 3.8e-55 220.3 370 48.6
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 6.0e-53 213.0 230 54.3
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.3e-52 211.8 140 76.4
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 8.7e-52 209.1 253 50.6
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.5e-51 207.6 146 78.8
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 6.4e-47 193.0 245 46.1
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 1.8e-41 174.9 433 33.0
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.4e-40 170.6 386 43.0
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 9.3e-38 162.5 275 41.8
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 2.3e-36 157.9 209 48.8
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 2.3e-36 157.9 209 48.8
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 5.8e-32 143.3 258 36.0
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.5e-29 134.0 89 76.4
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 2.4e-25 121.3 176 47.7
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.1e-25 120.9 147 52.4
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 1.4e-22 112.1 180 53.9
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.2e-18 98.2 62 77.4
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 1.5e-16 92.0 268 29.5
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 8.5e-15 86.3 62 72.6
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.9e-14 85.1 77 58.4
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 9.4e-14 82.8 58 72.4
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 1.0e-12 79.3 58 70.7
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.3e-12 78.2 73 57.5
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 9.7e-11 72.8 69 59.4
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.7e-10 72.0 85 49.4
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 1.4e-09 68.9 49 73.5
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.2e-08 65.9 47 63.8
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.7e-08 63.2 37 78.4
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 5.5e-06 57.0 67 50.7


User provided reference genes

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