Gene: AT5G66540

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G66540
  • Transcript Identifier AT5G66540.1
  • Gene Type Coding gene
  • Location Chr5 : 26556653-26559310 : negative

Gene Family Information

  • ID HOM05D004813
  • #Genes/#Species 153/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G66540.1
  • uniprot Q9FJY5

Descriptions

  • Description U3 small nucleolar ribonucleoprotein
  • Computational description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0042254
IEA
GOA Databaseribosome biogenesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0034457
IEA
GOA DatabaseMpp10 complex
GO:0034457
IBA
Gene OntologyMpp10 complex2
GO:0034457
IEA
InterProMpp10 complex
GO:0005732
IEA
GOA Databasesno(s)RNA-containing ribonucleoprotein complex
GO:0005732
IEA
InterProsno(s)RNA-containing ribonucleoprotein complex
GO:0005634
IDA
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus
GO:0005730
IDA
IEA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus3
GO:0032040
IBA
Gene Ontologysmall-subunit processome2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012173 U3 small nucleolar ribonucleoprotein complex, subunit Mpp10
Mapman id Description
17.1.3.2.1.1.3 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.MPP10 module.assembly factor (Mpp10)