Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.2e-99 364.4 183 100.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.0e-91 338.6 183 92.3
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.0e-90 335.9 183 92.3
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 4.8e-89 331.3 183 90.7
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 6.1e-84 314.3 180 90.0
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.0e-83 313.5 179 87.7
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 4.0e-83 311.6 178 88.2
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.2e-81 305.8 179 87.2
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 5.4e-80 301.2 178 84.8
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 5.9e-79 297.7 178 85.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 7.8e-79 297.4 178 83.1
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 1.7e-78 296.2 178 82.6
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.9e-78 295.4 176 84.1
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.8e-78 295.0 178 84.8
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 5.0e-78 294.7 173 85.5
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 5.0e-78 294.7 173 85.5
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.6e-78 294.3 179 83.8
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 6.6e-78 294.3 178 82.6
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 6.6e-78 294.3 178 81.5
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 6.6e-78 294.3 178 81.5
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.1e-77 293.5 178 82.0
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.1e-77 293.5 178 82.0
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.9e-77 292.7 179 83.8
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.3e-77 292.0 173 85.0
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 9.5e-77 290.4 173 84.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.2e-76 290.0 178 82.6
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 1.6e-76 289.7 179 82.7
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.1e-76 289.3 175 84.6
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 2.3e-75 285.8 179 80.4
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.3e-75 285.8 179 81.0
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.3e-75 285.8 180 81.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.3e-75 285.8 180 81.7
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 5.2e-75 284.6 167 83.8
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 6.8e-75 284.3 178 79.2
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 6.8e-75 284.3 180 80.6
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 8.9e-75 283.9 172 82.6
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.5e-74 283.1 172 82.0
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.0e-74 282.7 180 80.6
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 2.0e-74 282.7 180 80.6
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.6e-74 282.3 178 81.5
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 4.4e-74 281.6 172 82.0
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 9.8e-74 280.4 178 79.2
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 9.8e-74 280.4 180 79.4
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.3e-73 280.0 176 80.1
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.7e-73 279.6 178 78.7
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.7e-73 279.6 178 78.7
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 3.7e-73 278.5 175 77.7
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 3.7e-73 278.5 180 78.3
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.7e-73 278.5 172 81.4
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.9e-73 278.1 175 78.9
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 6.4e-73 277.7 179 78.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 8.3e-73 277.3 181 79.6
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 8.3e-73 277.3 180 77.2
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.4e-72 276.6 178 78.1
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 1.4e-72 276.6 179 81.6
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.2e-72 275.4 178 75.3
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 3.2e-72 275.4 172 81.4
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 4.1e-72 275.0 180 80.0
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.4e-72 274.6 178 76.4
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 9.2e-72 273.9 178 79.2
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.2e-71 273.5 173 76.9
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.6e-71 273.1 180 76.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 2.0e-71 272.7 178 77.0
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.0e-71 272.7 175 80.0
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 2.0e-71 272.7 181 76.8
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 6.0e-71 271.2 178 78.7
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 1.3e-70 270.0 166 80.7
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 3.0e-70 268.9 188 73.4
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 6.6e-70 267.7 175 78.3
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.9e-69 266.2 181 75.1
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.5e-69 265.8 178 76.4
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 2.5e-69 265.8 174 77.6
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.3e-69 265.4 181 74.6
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 4.3e-69 265.0 178 78.7
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 5.6e-69 264.6 177 75.1
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 7.3e-69 264.2 177 75.1
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 7.3e-69 264.2 177 75.1
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 7.3e-69 264.2 180 73.3
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 1.6e-68 263.1 177 74.6
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 1.6e-68 263.1 177 74.6
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.6e-68 263.1 178 77.5
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 4.7e-68 261.5 174 74.7
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 6.2e-68 261.2 185 74.6
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 6.2e-68 261.2 185 74.6
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 6.2e-68 261.2 176 77.3
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 8.0e-68 260.8 178 74.2
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 3.1e-67 258.8 174 76.4
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 5.2e-67 258.1 174 75.9
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 6.8e-67 257.7 174 75.9
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.5e-66 256.5 180 71.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.0e-66 256.1 174 73.6
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.6e-66 255.8 173 74.0
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.7e-65 253.1 176 72.7
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.2e-65 252.7 174 72.4
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 2.9e-65 252.3 177 72.9
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.9e-65 251.5 174 73.0
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.9e-65 251.5 174 73.0
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 6.4e-65 251.1 186 70.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 6.4e-65 251.1 175 69.7
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.9e-64 249.6 178 72.5
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 4.1e-64 248.4 180 71.7
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 7.0e-64 247.7 175 73.7
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.6e-63 246.5 181 69.6
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.7e-63 245.7 180 69.4
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 2.7e-63 245.7 169 75.7
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 4.6e-63 245.0 178 70.2
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 6.0e-63 244.6 175 70.3
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.0e-62 243.8 174 71.8
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.0e-62 243.8 172 72.7
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.3e-62 243.4 178 71.3
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.7e-62 243.0 175 69.7
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 6.6e-62 241.1 179 69.3
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.9e-61 239.6 181 68.0
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 7.3e-61 237.7 178 68.0
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 7.3e-61 237.7 175 70.9
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 9.5e-61 237.3 175 72.6
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.2e-60 236.9 179 70.4
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-60 236.9 157 79.0
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 2.1e-60 236.1 179 68.7
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.8e-60 235.7 172 70.9
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 3.6e-60 235.3 150 77.3
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 4.7e-60 235.0 173 68.8
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 6.2e-60 234.6 157 75.8
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 5.2e-59 231.5 176 68.8
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 6.8e-59 231.1 179 69.3
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.2e-58 230.3 249 53.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-57 226.9 143 77.6
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 2.9e-57 225.7 191 67.0
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 3.5e-55 218.8 136 77.9
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 2.3e-54 216.1 166 67.5
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.8e-51 206.5 121 80.2
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 2.2e-49 199.5 195 60.5
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.9e-49 198.4 173 63.6
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.4e-48 196.8 182 58.2
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 2.1e-47 193.0 171 57.9
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.7e-47 192.6 135 67.4
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.3e-46 190.3 197 58.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 6.6e-46 188.0 150 63.3
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 9.6e-45 184.1 180 54.4
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-38 163.3 89 85.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 3.0e-38 162.5 182 50.0
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 6.6e-38 161.4 116 69.8
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.6e-36 155.6 86 84.9
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.6e-36 155.6 174 51.1
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 2.4e-35 152.9 130 62.3
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.9e-35 151.4 86 81.4
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 6.4e-33 144.8 89 79.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 7.1e-32 141.4 132 56.8
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.1e-29 134.0 146 54.1
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.3e-29 132.5 131 56.5
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.0e-27 125.6 86 76.7
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 4.9e-25 118.6 86 69.8
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 6.4e-25 118.2 128 50.0
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 9.3e-24 114.4 125 46.4
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 2.3e-22 109.8 108 58.3
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 2.3e-22 109.8 108 58.3
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 4.8e-20 102.1 105 45.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.6e-18 96.3 149 38.9
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.0e-15 85.1 46 82.6
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 3.3e-13 79.3 65 63.1
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 6.3e-12 75.1 80 50.0
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.4e-11 73.9 89 40.4
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.8e-11 73.6 204 35.3
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 5.9e-10 68.6 85 45.9
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.0e-09 67.8 79 49.4
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 3.9e-06 55.8 109 37.6
MBI13_g11352_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 3.9e-06 55.8 48 60.4


User provided reference genes

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