Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 6.0e-103 377.5 187 100.0
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 4.2e-56 221.9 213 61.0
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 2.3e-22 109.8 115 53.9
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 3.1e-22 109.4 99 59.6
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 8.9e-22 107.8 215 39.5
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 1.2e-21 107.5 98 59.2
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 2.0e-21 106.7 98 58.2
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 2.0e-21 106.7 116 52.6
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 2.0e-21 106.7 116 52.6
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 3.4e-21 105.9 98 59.2
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 4.4e-21 105.5 98 58.2
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 5.8e-21 105.1 161 44.7
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 5.8e-21 105.1 98 55.1
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 7.5e-21 104.8 98 57.1
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 7.5e-21 104.8 98 57.1
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 9.8e-21 104.4 98 57.1
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 9.8e-21 104.4 98 57.1
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 1.3e-20 104.0 98 57.1
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.3e-20 104.0 98 58.2
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.7e-20 103.6 98 58.2
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.2e-20 103.2 162 42.6
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 2.2e-20 103.2 99 53.5
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 2.2e-20 103.2 99 55.6
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.9e-20 102.8 131 48.9
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 2.9e-20 102.8 98 54.1
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.7e-20 102.4 115 53.0
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 3.7e-20 102.4 98 56.1
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 4.9e-20 102.1 98 55.1
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 4.9e-20 102.1 131 48.9
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 4.9e-20 102.1 98 53.1
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 8.3e-20 101.3 98 54.1
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 8.3e-20 101.3 114 51.8
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 8.3e-20 101.3 109 53.2
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 8.3e-20 101.3 98 56.1
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 8.3e-20 101.3 98 55.1
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.1e-19 100.9 131 48.9
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 1.1e-19 100.9 114 52.6
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 1.4e-19 100.5 136 44.1
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.4e-19 100.5 155 45.2
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.4e-19 100.5 166 41.0
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 1.4e-19 100.5 98 53.1
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 1.9e-19 100.1 98 55.1
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.4e-19 99.8 133 47.4
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 3.2e-19 99.4 114 50.9
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 3.2e-19 99.4 98 55.1
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 4.1e-19 99.0 98 55.1
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 4.1e-19 99.0 98 54.1
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 4.1e-19 99.0 135 45.2
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 4.1e-19 99.0 98 55.1
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 4.1e-19 99.0 98 55.1
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 5.4e-19 98.6 143 44.8
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 5.4e-19 98.6 116 49.1
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 7.1e-19 98.2 112 50.9
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 7.1e-19 98.2 103 52.4
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 9.2e-19 97.8 98 52.0
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 9.2e-19 97.8 98 52.0
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.2e-18 97.4 98 52.0
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 1.2e-18 97.4 113 48.7
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.6e-18 97.1 165 40.0
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 2.1e-18 96.7 98 53.1
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 2.1e-18 96.7 116 47.4
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 2.1e-18 96.7 98 54.1
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 2.1e-18 96.7 98 54.1
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.7e-18 96.3 98 52.0
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 2.7e-18 96.3 98 52.0
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.7e-18 96.3 137 47.4
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 2.7e-18 96.3 46 91.3
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.7e-18 96.3 116 47.4
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 2.7e-18 96.3 98 52.0
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.5e-18 95.9 99 52.5
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 3.5e-18 95.9 114 48.2
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 3.5e-18 95.9 98 52.0
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 4.6e-18 95.5 98 52.0
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 4.6e-18 95.5 55 80.0
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 7.8e-18 94.7 98 52.0
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 7.8e-18 94.7 115 50.4
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 1.0e-17 94.4 98 51.0
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 1.0e-17 94.4 98 52.0
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 1.3e-17 94.0 131 45.0
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 1.3e-17 94.0 131 45.0
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.3e-17 94.0 116 46.6
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 1.7e-17 93.6 98 51.0
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 1.7e-17 93.6 98 51.0
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 1.7e-17 93.6 98 51.0
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 1.7e-17 93.6 98 51.0
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 1.7e-17 93.6 98 51.0
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 1.7e-17 93.6 98 52.0
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 1.7e-17 93.6 194 36.1
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 3.9e-17 92.4 98 49.0
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 3.9e-17 92.4 98 51.0
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 3.9e-17 92.4 98 50.0
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 3.9e-17 92.4 98 50.0
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 5.1e-17 92.0 98 51.0
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 6.6e-17 91.7 98 50.0
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.1e-16 90.9 98 52.0
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 3.3e-16 89.4 114 46.5
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 4.3e-16 89.0 130 44.6
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 9.5e-16 87.8 98 49.0
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 9.5e-16 87.8 98 49.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 9.5e-16 87.8 150 41.3
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 2.1e-15 86.7 168 39.3
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 2.1e-15 86.7 47 80.9
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 9.9e-13 77.8 99 48.5
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.7e-12 77.0 100 47.0
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 2.9e-12 76.3 98 43.9
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 3.7e-12 75.9 99 46.5
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 3.7e-12 75.9 102 46.1
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 4.9e-12 75.5 56 62.5
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 6.4e-12 75.1 110 38.2
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.1e-11 74.3 149 36.2
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 1.1e-11 74.3 117 41.0
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 1.4e-11 73.9 99 44.4
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 1.9e-11 73.6 98 42.9
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.9e-11 73.6 98 45.9
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 3.2e-11 72.8 98 41.8
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 3.2e-11 72.8 98 45.9
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 4.1e-11 72.4 99 44.4
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.1e-11 72.4 98 43.9
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 4.1e-11 72.4 99 40.4
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 5.4e-11 72.0 98 44.9
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 5.4e-11 72.0 98 44.9
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 7.1e-11 71.6 99 40.4
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 9.2e-11 71.2 143 35.7
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 9.2e-11 71.2 98 42.9
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.2e-10 70.9 142 34.5
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.2e-10 70.9 134 36.6
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.6e-10 70.5 98 41.8
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.6e-10 70.5 98 43.9
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 1.6e-10 70.5 98 41.8
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 2.1e-10 70.1 102 44.1
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 2.1e-10 70.1 155 34.8
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 2.1e-10 70.1 165 34.5
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.7e-10 69.7 98 42.9
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.7e-10 69.7 98 42.9
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 2.7e-10 69.7 47 68.1
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 2.7e-10 69.7 47 68.1
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 2.7e-10 69.7 51 60.8
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 4.6e-10 68.9 143 40.6
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 4.6e-10 68.9 132 37.1
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 4.6e-10 68.9 98 42.9
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 6.0e-10 68.6 138 34.1
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 6.0e-10 68.6 98 40.8
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.7e-09 67.0 46 67.4
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.7e-09 67.0 146 35.6
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.7e-09 67.0 98 39.8
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.3e-09 66.6 99 39.4
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 2.3e-09 66.6 47 68.1
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 3.9e-09 65.9 102 41.2
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 5.1e-09 65.5 98 43.9
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 5.1e-09 65.5 98 43.9
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 6.6e-09 65.1 98 40.8
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.6e-09 65.1 98 40.8
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.6e-09 64.7 98 40.8
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.6e-09 64.7 98 40.8
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.6e-09 64.7 98 41.8
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 1.1e-08 64.3 93 43.0
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 1.1e-08 64.3 47 61.7
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.5e-08 63.9 98 36.7
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 2.5e-08 63.2 50 56.0
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 4.3e-08 62.4 98 36.7
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 4.3e-08 62.4 47 61.7
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 7.3e-08 61.6 98 38.8
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.8e-07 59.7 47 55.3
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 8.1e-07 58.2 47 55.3
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 2.4e-06 56.6 47 55.3


User provided reference genes

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