Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 0.0e+00 1793.5 930 100.0
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 0.0e+00 1768.4 930 98.6
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1693.7 930 94.9
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1678.3 930 93.4
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 0.0e+00 1673.7 930 93.5
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 0.0e+00 1671.0 930 93.7
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 0.0e+00 1656.0 930 91.8
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 0.0e+00 1653.3 930 91.4
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 0.0e+00 1652.1 930 91.9
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 0.0e+00 1651.7 930 91.9
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 0.0e+00 1650.2 930 91.9
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 0.0e+00 1649.0 930 91.7
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 0.0e+00 1647.5 930 91.5
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 0.0e+00 1646.3 930 90.9
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 0.0e+00 1645.6 930 91.1
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 0.0e+00 1643.6 930 91.2
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 0.0e+00 1642.1 929 91.2
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 0.0e+00 1641.3 930 90.5
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 0.0e+00 1641.3 930 91.4
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 0.0e+00 1638.6 930 90.5
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 0.0e+00 1637.5 929 91.0
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 0.0e+00 1637.1 930 90.2
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 0.0e+00 1636.7 930 90.8
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 0.0e+00 1636.7 930 90.8
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 0.0e+00 1635.5 930 90.6
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 0.0e+00 1634.8 930 90.5
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 1634.4 930 90.8
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 0.0e+00 1634.4 930 90.1
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 0.0e+00 1632.8 930 90.0
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 0.0e+00 1630.5 946 89.7
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 0.0e+00 1629.4 930 89.8
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1628.6 930 89.6
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1626.7 930 90.1
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1626.7 930 89.5
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1626.3 930 90.2
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 0.0e+00 1624.0 930 89.4
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 0.0e+00 1621.7 930 89.2
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 0.0e+00 1621.7 978 86.8
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 0.0e+00 1619.4 930 89.6
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 0.0e+00 1619.4 930 90.0
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1618.2 959 87.3
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 0.0e+00 1617.8 930 90.0
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1615.9 959 87.1
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 0.0e+00 1615.1 932 90.6
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 0.0e+00 1614.4 930 89.8
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 0.0e+00 1613.6 930 88.6
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 0.0e+00 1611.7 972 86.9
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1611.7 959 87.1
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 0.0e+00 1609.3 951 88.9
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 0.0e+00 1608.2 930 89.5
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 0.0e+00 1608.2 930 88.6
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1605.5 930 88.0
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 0.0e+00 1604.3 930 90.2
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1600.5 930 87.8
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 0.0e+00 1598.9 905 90.9
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 0.0e+00 1596.6 930 88.6
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 0.0e+00 1596.6 930 88.9
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 0.0e+00 1591.6 930 89.4
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 0.0e+00 1590.9 930 87.8
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 0.0e+00 1588.9 930 88.3
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 0.0e+00 1587.8 930 87.4
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 0.0e+00 1586.6 930 89.2
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 0.0e+00 1582.4 930 88.2
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1582.0 936 87.7
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 0.0e+00 1581.6 930 88.8
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 0.0e+00 1580.1 905 89.6
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 0.0e+00 1579.7 930 88.8
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 0.0e+00 1579.3 930 87.4
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 0.0e+00 1578.1 931 88.0
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 0.0e+00 1574.7 930 87.3
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 0.0e+00 1572.4 930 87.1
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 0.0e+00 1572.4 930 88.0
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 0.0e+00 1572.0 930 87.2
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 0.0e+00 1571.2 930 85.9
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1570.8 930 87.1
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1570.8 930 87.1
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 0.0e+00 1570.8 930 87.1
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 0.0e+00 1570.4 930 88.5
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 0.0e+00 1570.1 930 87.1
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 0.0e+00 1570.1 930 87.1
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 0.0e+00 1569.3 930 87.0
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 0.0e+00 1568.5 930 86.9
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 0.0e+00 1565.1 930 86.8
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 0.0e+00 1562.4 930 86.7
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 0.0e+00 1562.4 930 86.2
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 0.0e+00 1561.6 980 83.8
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 0.0e+00 1528.1 930 85.6
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1526.5 930 84.3
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 0.0e+00 1523.5 930 84.2
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 0.0e+00 1506.1 951 84.3
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 0.0e+00 1464.9 931 82.1
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 0.0e+00 1439.5 927 81.0
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 0.0e+00 1435.6 930 80.5
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 0.0e+00 1432.9 1023 75.3
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 0.0e+00 1417.9 989 78.2
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 0.0e+00 1414.8 921 80.7
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 0.0e+00 1375.9 930 76.1
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 0.0e+00 1373.2 934 75.9
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 0.0e+00 1239.9 851 74.7
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1213.7 947 67.3
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1210.7 947 65.8
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1209.1 946 66.9
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1201.0 944 66.7
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1199.1 935 66.5
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 0.0e+00 1170.2 935 65.5
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 8.5e-307 1057.0 930 63.7
Ca_24183_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 3.1e-301 1038.5 596 89.9
MD05G1233200 Malus domestica HOM05D003504 ORTHO05D004006 7.3e-258 894.4 469 96.2
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 9.9e-255 884.0 958 50.6
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.0e-251 874.0 520 87.7
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 5.1e-251 871.7 534 85.2
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 3.8e-246 855.5 780 61.4
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 4.7e-241 838.6 523 83.9
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 8.2e-217 758.1 458 86.5
Gohir.D12G176866 Gossypium hirsutum HOM05D003504 ORTHO05D004006 3.3e-210 736.1 387 97.7
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.6e-204 716.1 494 78.9
Phvul.009G114325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 3.4e-199 699.5 430 83.5
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 6.1e-196 688.7 416 85.6
QL04p085812 Quercus lobata HOM05D003504 ORTHO05D004006 2.7e-188 663.3 471 77.1
RcHm_v2.0_Chr5g0024371 Rosa chinensis HOM05D003504 ORTHO05D004006 5.9e-175 619.0 344 90.4
Os03g0328000 Oryza sativa ssp. japonica HOM05D003504 ORTHO05D004006 1.1e-149 535.0 282 96.5
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 4.6e-111 406.8 231 89.2
Prupe.3G108400 Prunus persica HOM05D003504 ORTHO05D004006 6.9e-107 392.9 336 67.9
Ca_24184_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.7e-103 380.9 252 78.2
AL727U10010 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.1e-101 375.6 204 96.6
Cc03_g11030 Coffea canephora HOM05D003504 ORTHO05D004006 1.5e-77 295.4 231 69.3
RcHm_v2.0_Chr5g0024381 Rosa chinensis HOM05D003504 ORTHO05D004006 1.2e-58 232.6 126 96.8
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.6e-53 214.9 114 93.0
CAN.G338.64 Capsicum annuum HOM05D003504 ORTHO05D004006 7.8e-42 176.8 150 65.3
Potri.004G000750 Populus trichocarpa HOM05D003504 ORTHO05D004006 5.0e-41 174.1 99 92.9
AagrBONN_evm.TU.Sc2ySwM_362.1411 Anthoceros agrestis HOM05D003504 ORTHO05D004006 8.0e-39 166.8 662 24.9
Phvul.011G177325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 3.4e-29 134.8 135 57.8
Lsat_1_v5_gn_3_41440 Lactuca sativa HOM05D003504 ORTHO05D004006 9.2e-27 126.7 97 72.2
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 1.0e-25 123.2 92 67.4
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 1.3e-25 122.9 167 47.9
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 8.6e-25 120.2 96 64.6
Lsat_1_v5_gn_7_41641 Lactuca sativa HOM05D003504 ORTHO05D004006 8.1e-23 113.6 145 51.0
CAN.G861.1 Capsicum annuum HOM05D003504 ORTHO05D004006 6.4e-20 104.0 85 60.0
unitig_0.g2295 Utricularia gibba HOM05D003504 ORTHO05D004006 2.4e-19 102.1 72 77.8
TPR.G35990 Trifolium pratense HOM05D003504 ORTHO05D004006 1.2e-18 99.8 71 71.8
TPR.G38062 Trifolium pratense HOM05D003504 ORTHO05D004006 1.6e-18 99.4 71 71.8
unitig_0.g393 Utricularia gibba HOM05D003504 ORTHO05D004006 1.6e-15 89.4 140 41.4
CAN.G83.10 Capsicum annuum HOM05D003504 ORTHO05D004006 6.2e-15 87.4 135 42.2
CAN.G83.9 Capsicum annuum HOM05D003504 ORTHO05D004006 4.9e-12 77.8 71 62.0
Lsat_1_v5_gn_1_87860 Lactuca sativa HOM05D002142 ORTHO05D001189 1.1e-11 76.6 68 64.7
MCO09G216 Micromonas commoda HOM05D003504 ORTHO05D004006 1.3e-09 69.7 278 25.2
Lsat_1_v5_gn_5_53440 Lactuca sativa HOM05D003504 ORTHO05D004006 6.6e-09 67.4 62 64.5
Psat6g175760 Pisum sativum HOM05D001676 ORTHO05D001539 1.5e-08 66.2 41 80.5
QL04p085886 Quercus lobata HOM05D003504 ORTHO05D004006 1.5e-08 66.2 68 55.9
CAN.G103.4 Capsicum annuum HOM05D002685 ORTHO05D001487 2.1e-07 62.4 32 84.4


User provided reference genes

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