Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 0.0e+00 1227.6 619 100.0
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 0.0e+00 1107.4 591 94.6
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 3.4e-304 1047.7 591 88.8
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 1.7e-290 1002.3 591 85.1
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 2.4e-289 998.4 591 84.4
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 5.9e-280 967.2 591 82.2
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 1.6e-272 942.6 594 79.5
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 1.0e-268 929.9 591 78.2
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 1.7e-266 922.5 590 79.0
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 4.1e-265 917.9 591 79.9
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 2.0e-264 915.6 591 77.7
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 5.9e-264 914.1 591 79.2
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 8.5e-263 910.2 591 78.5
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 3.2e-262 908.3 591 76.8
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 5.5e-262 907.5 591 76.8
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 7.2e-262 907.1 591 77.8
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 3.6e-261 904.8 592 78.4
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 1.8e-260 902.5 591 77.0
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 4.0e-260 901.4 592 78.0
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 4.0e-260 901.4 591 76.6
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 5.2e-260 901.0 591 76.6
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.2e-259 899.8 591 77.2
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 5.7e-259 897.5 591 76.1
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 7.5e-259 897.1 591 76.3
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 1.7e-258 896.0 591 77.7
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 4.9e-258 894.4 591 75.6
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 6.3e-258 894.0 591 76.0
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 7.0e-257 890.6 594 76.3
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 9.2e-257 890.2 592 76.4
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 1.2e-256 889.8 591 77.2
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 1.5e-254 882.9 591 77.0
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.5e-254 882.1 591 77.0
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 2.5e-254 882.1 591 74.8
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 2.1e-253 879.0 593 74.4
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 1.8e-252 875.9 591 75.6
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.8e-252 875.9 591 76.5
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 1.2e-251 873.2 591 74.5
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 6.4e-250 867.5 593 74.0
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 8.3e-250 867.1 591 73.6
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 1.8e-249 865.9 514 86.8
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 7.0e-249 864.0 592 75.7
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 7.0e-249 864.0 593 74.0
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 1.6e-248 862.8 592 76.0
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 2.0e-248 862.4 593 73.9
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 2.7e-248 862.1 593 73.7
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 3.0e-247 858.6 595 74.5
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 8.6e-247 857.1 593 73.5
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 2.8e-245 852.0 570 75.3
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 1.8e-244 849.4 593 72.7
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 1.8e-244 849.4 593 73.0
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.3e-244 849.0 595 73.3
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 3.1e-244 848.6 594 73.7
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 8.9e-244 847.0 591 73.4
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 1.5e-243 846.3 593 73.7
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 2.0e-243 845.9 591 72.4
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 5.8e-243 844.3 593 71.8
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 8.3e-242 840.5 593 72.2
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 4.1e-241 838.2 591 72.6
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 4.1e-241 838.2 596 71.8
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 5.4e-241 837.8 593 72.0
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 7.0e-241 837.4 592 72.6
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 2.0e-240 835.9 596 73.0
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 2.0e-240 835.9 591 72.8
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 2.7e-240 835.5 577 73.3
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 3.5e-240 835.1 591 73.9
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 3.5e-240 835.1 591 71.4
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 2.3e-239 832.4 596 71.0
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 2.3e-239 832.4 593 73.2
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 1.1e-238 830.1 593 73.0
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.9e-238 829.3 591 70.9
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.9e-238 829.3 592 74.2
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 2.5e-238 828.9 591 71.2
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 7.3e-238 827.4 620 69.2
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 1.4e-236 823.2 593 70.2
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 5.2e-236 821.2 591 70.4
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 8.9e-236 820.5 598 71.1
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 2.6e-235 818.9 591 70.9
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 2.6e-235 818.9 593 71.8
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 2.9e-234 815.5 591 71.1
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 6.4e-234 814.3 591 70.6
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 1.4e-233 813.1 593 69.6
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 2.7e-232 808.9 591 69.7
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.7e-231 806.2 683 64.6
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 8.6e-231 803.9 591 70.1
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.9e-230 802.7 591 69.9
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 9.5e-230 800.4 591 69.7
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 9.5e-230 800.4 591 71.1
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 1.6e-229 799.7 591 69.7
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 3.6e-229 798.5 591 69.7
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 1.1e-228 797.0 591 69.5
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 3.1e-228 795.4 636 65.6
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 4.9e-226 788.1 592 70.6
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.9e-222 776.2 591 68.5
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 6.2e-221 771.2 593 67.5
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 5.8e-219 764.6 596 65.4
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 2.2e-218 762.7 595 65.4
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 3.8e-218 761.9 604 65.1
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 9.3e-217 757.3 604 64.1
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 8.1e-213 744.2 536 71.5
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 7.9e-208 727.6 594 65.3
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 8.4e-202 707.6 594 63.8
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 3.4e-187 659.1 593 59.4
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 3.3e-182 642.5 413 80.1
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 5.3e-180 635.2 595 57.0
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 1.5e-179 633.6 598 56.9
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 3.4e-179 632.5 415 77.3
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 4.7e-168 595.5 601 54.1
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 2.4e-164 583.2 494 61.1
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.5e-163 579.3 611 51.4
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.0e-159 567.8 622 50.2
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.8e-159 567.0 608 50.7
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.3e-154 550.8 623 48.6
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 4.7e-152 542.3 588 50.3
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 4.7e-152 542.3 597 49.7
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 9.8e-150 534.6 591 49.7
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 3.2e-132 476.5 379 67.8
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 4.6e-131 472.6 383 66.3
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 6.2e-112 409.1 498 46.8
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 1.5e-102 377.9 308 63.0
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 7.9e-91 339.0 367 51.5
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 3.7e-88 330.1 625 36.3
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 2.1e-80 304.3 284 59.2
Ca_24185_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.7e-59 234.2 137 81.0
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 8.2e-48 196.1 131 74.0
Zm00001eb113250 Zea mays HOM05D003504 ORTHO05D004006 2.7e-38 164.5 114 68.4
Zm00001eb145990 Zea mays HOM05D003504 ORTHO05D004006 1.8e-34 151.8 135 63.0
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 6.3e-32 143.3 103 70.9
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 8.3e-32 142.9 237 41.8
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 1.1e-31 142.5 190 47.4
CSS0012196 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 2.4e-31 141.4 68 95.6
Cpa.g.sc34.44 Carica papaya HOM05D003504 ORTHO05D004006 1.0e-26 125.9 143 57.3
AagrBONN_evm.TU.Sc2ySwM_344.764 Anthoceros agrestis HOM05D003504 ORTHO05D004006 3.5e-22 110.9 77 62.3
SHI02263 Sapria himalayana HOM05D003504 ORTHO05D004006 2.5e-20 104.8 101 56.4
SHI02262 Sapria himalayana HOM05D003504 ORTHO05D004006 7.5e-17 93.2 84 57.1
Zm00001eb412430 Zea mays HOM05D003504 ORTHO05D004006 9.8e-17 92.8 89 60.7
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 3.7e-16 90.9 77 63.6
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 5.4e-15 87.0 57 73.7
Cpa.g.sc3151.1 Carica papaya HOM05D003504 ORTHO05D004006 1.6e-14 85.5 96 50.0
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 3.0e-13 81.3 64 65.6
ClCG03G013860 Citrullus lanatus HOM05D003504 ORTHO05D004006 3.9e-13 80.9 71 59.2
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 6.2e-11 73.6 64 56.2
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 1.4e-10 72.4 78 51.3
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 6.8e-10 70.1 88 38.6


User provided reference genes

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