Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 8.8e-151 537.0 277 100.0
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 8.4e-69 264.6 158 89.9
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.3e-56 224.2 154 77.9
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.1e-55 219.5 159 76.7
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 3.2e-52 209.5 153 72.5
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 5.5e-52 208.8 150 73.3
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 4.6e-51 205.7 154 71.4
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.3e-50 203.4 150 71.3
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 3.0e-50 203.0 158 67.7
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 5.1e-50 202.2 153 70.6
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.1e-49 201.1 164 67.7
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.3e-48 197.6 164 67.1
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 4.8e-48 195.7 155 69.0
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.3e-48 195.3 158 67.7
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.3e-48 195.3 158 67.7
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.8e-47 193.7 155 68.4
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.3e-47 192.2 158 67.1
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 5.3e-47 192.2 155 67.7
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.0e-46 190.3 152 67.1
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 2.0e-46 190.3 154 68.8
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.6e-46 189.9 154 68.2
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.0e-45 188.0 154 68.2
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.3e-45 187.6 154 67.5
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 5.0e-45 185.7 155 66.5
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.5e-44 183.3 153 67.3
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 4.2e-44 182.6 151 67.5
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.2e-44 182.6 150 64.0
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 4.7e-43 179.1 158 65.8
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 6.1e-43 178.7 156 64.7
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.4e-42 177.6 160 60.6
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.8e-42 177.2 158 65.2
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.9e-42 176.0 153 60.8
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 5.2e-42 175.6 144 66.7
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.8e-42 174.9 155 63.9
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.5e-41 174.1 159 59.7
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.5e-41 174.1 151 62.9
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.0e-41 173.7 155 64.5
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 2.0e-41 173.7 157 61.8
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 2.6e-41 173.3 154 60.4
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 2.6e-41 173.3 151 62.3
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 3.3e-41 172.9 154 61.0
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 5.7e-41 172.2 131 73.3
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 5.7e-41 172.2 157 61.1
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 5.7e-41 172.2 151 62.3
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 5.7e-41 172.2 154 63.0
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 7.4e-41 171.8 151 62.3
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.3e-40 171.0 151 62.3
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.2e-40 170.2 160 58.8
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.2e-40 170.2 152 60.5
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 4.8e-40 169.1 160 59.4
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 4.8e-40 169.1 160 59.4
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 6.3e-40 168.7 151 60.3
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 6.3e-40 168.7 149 62.4
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 6.3e-40 168.7 167 55.7
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 8.2e-40 168.3 158 57.0
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.8e-39 167.2 151 60.9
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 2.4e-39 166.8 146 62.3
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.4e-39 166.8 149 59.7
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 3.1e-39 166.4 162 58.0
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 3.1e-39 166.4 150 61.3
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.1e-39 166.0 151 60.3
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 7.0e-39 165.2 151 59.6
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 7.0e-39 165.2 154 61.0
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 9.1e-39 164.9 149 61.1
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 9.1e-39 164.9 149 61.1
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 9.1e-39 164.9 156 60.9
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 9.1e-39 164.9 150 61.3
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 1.2e-38 164.5 149 61.7
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.6e-38 164.1 160 58.8
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 1.6e-38 164.1 166 57.2
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 2.0e-38 163.7 116 72.4
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 3.5e-38 162.9 160 55.6
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 3.5e-38 162.9 153 60.8
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 4.5e-38 162.5 152 60.5
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 4.5e-38 162.5 148 60.8
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 7.7e-38 161.8 178 55.6
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 7.7e-38 161.8 151 60.3
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.0e-37 161.4 177 55.4
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.3e-37 161.0 153 58.2
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.3e-37 161.0 151 61.6
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.7e-37 160.6 140 61.4
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.7e-37 160.6 150 62.0
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.2e-37 160.2 160 55.6
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 6.5e-37 158.7 152 59.2
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 6.5e-37 158.7 150 60.7
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 1.1e-36 157.9 149 59.7
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.5e-36 156.8 150 58.0
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 7.2e-36 155.2 151 57.6
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 7.2e-36 155.2 151 57.6
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.6e-35 154.1 153 58.2
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-34 151.4 150 58.7
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.4e-34 151.0 110 70.0
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.8e-34 150.6 154 55.2
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.8e-34 150.6 150 58.0
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.8e-34 150.6 150 58.0
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.3e-34 150.2 155 56.8
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.0e-34 149.8 149 56.4
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 5.2e-34 149.1 151 56.3
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 6.7e-34 148.7 151 55.0
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 6.7e-34 148.7 148 60.1
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.5e-33 147.5 129 63.6
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.0e-33 147.1 166 51.2
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 2.0e-33 147.1 217 43.8
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.6e-33 146.7 153 57.5
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 2.6e-33 146.7 157 54.1
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 9.7e-33 144.8 114 66.7
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.3e-32 144.4 171 52.0
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.3e-32 144.4 157 54.8
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.8e-32 143.3 166 50.0
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 3.7e-32 142.9 151 56.3
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 3.7e-32 142.9 151 56.3
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 3.7e-32 142.9 151 56.3
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.7e-32 142.9 125 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 8.2e-32 141.7 146 54.8
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.1e-31 141.4 196 46.9
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.8e-31 140.6 150 54.0
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.8e-31 140.6 150 54.0
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.8e-31 140.6 150 54.0
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 2.4e-31 140.2 151 53.6
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.1e-31 139.8 158 51.9
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 5.3e-31 139.0 146 54.1
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.0e-30 137.1 150 51.3
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 2.7e-30 136.7 153 56.2
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.5e-30 136.3 124 61.3
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.5e-30 136.3 157 53.5
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 5.9e-30 135.6 114 62.3
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.9e-29 133.3 158 53.2
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 3.8e-29 132.9 150 51.3
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 6.5e-29 132.1 150 55.3
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.1e-28 131.3 150 55.3
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 3.2e-28 129.8 87 73.6
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.2e-28 128.6 181 46.4
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 9.4e-28 128.3 167 50.9
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 9.4e-28 128.3 150 54.0
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.2e-27 127.9 128 57.0
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.2e-27 127.9 147 50.3
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 1.6e-27 127.5 158 51.9
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 2.1e-27 127.1 158 51.3
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.6e-27 126.3 162 48.1
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 3.6e-27 126.3 150 50.0
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 4.7e-27 125.9 151 47.0
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 6.1e-27 125.6 93 69.9
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 6.1e-27 125.6 96 67.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.4e-26 124.4 158 51.3
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.3e-26 123.6 95 67.4
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 8.8e-26 121.7 142 51.4
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.0e-25 120.6 170 45.3
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.4e-25 119.8 149 49.0
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 4.4e-25 119.4 94 71.3
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 7.5e-25 118.6 120 55.0
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 9.8e-25 118.2 150 47.3
vmacro16792 Vaccinium macrocarpon HOM05D000079 ORTHO05D000211 1.3e-24 117.9 69 82.6
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.7e-24 117.5 102 59.8
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 2.4e-23 113.6 92 60.9
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 7.0e-23 112.1 178 42.1
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.2e-22 111.3 83 67.5
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.5e-22 109.4 165 46.1
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.0e-21 108.2 82 64.6
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.3e-21 107.8 82 64.6
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.5e-20 104.4 88 62.5
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 4.2e-20 102.8 263 33.5
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 6.1e-19 99.0 161 43.5
vmacro04428 Vaccinium macrocarpon HOM05D000089 ORTHO05D000104 1.8e-18 97.4 173 38.7
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 3.7e-16 89.7 163 40.5
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 6.3e-16 89.0 82 62.2
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 2.4e-15 87.0 77 53.2
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 5.4e-15 85.9 152 39.5
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.5e-14 83.2 62 75.8
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.3e-13 80.5 82 53.7
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.3e-13 80.5 63 63.5
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.9e-12 77.4 90 54.4
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.5e-12 77.0 63 61.9
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 6.1e-11 72.4 83 41.0
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 6.1e-11 72.4 58 58.6
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.4e-07 59.3 92 43.5
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 7.8e-06 55.5 76 42.1


User provided reference genes

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