Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.6e-208 729.2 373 100.0
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.7e-144 515.4 357 77.0
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.2e-131 473.8 500 56.2
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 9.5e-100 367.9 329 61.1
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 9.9e-97 357.8 356 55.3
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.4e-95 354.0 358 55.0
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.1e-95 352.4 310 58.7
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.1e-91 340.1 291 58.4
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.8e-90 337.0 248 66.5
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.0e-89 333.6 371 49.9
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 5.8e-89 332.0 323 56.0
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 7.1e-87 325.1 345 52.5
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.7e-86 323.2 379 49.9
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.0e-85 321.2 296 55.7
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.3e-85 320.1 287 56.1
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 3.0e-85 319.7 366 50.5
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 3.0e-85 319.7 295 58.6
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 8.7e-85 318.2 318 54.7
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.3e-84 316.2 346 52.3
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 9.6e-84 314.7 336 50.3
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 9.6e-84 314.7 313 52.4
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.6e-83 313.9 319 51.7
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 8.1e-83 311.6 316 51.6
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.4e-82 310.1 336 52.7
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 2.4e-82 310.1 358 49.7
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.1e-82 309.7 313 50.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 4.0e-82 309.3 327 50.5
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.2e-82 308.9 287 56.1
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 6.9e-82 308.5 346 48.6
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 6.9e-82 308.5 286 54.9
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.2e-81 307.8 326 50.0
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.2e-81 307.8 311 52.4
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.2e-81 307.8 316 51.6
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.2e-81 307.8 233 62.2
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 2.6e-81 306.6 303 54.1
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 4.4e-81 305.8 287 53.7
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 7.6e-81 305.1 287 55.1
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.8e-80 302.8 287 53.7
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 6.4e-80 302.0 310 51.6
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.4e-80 302.0 380 46.8
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 6.4e-80 302.0 310 50.0
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 8.4e-80 301.6 287 54.7
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 2.4e-79 300.1 360 47.2
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 4.2e-79 299.3 287 53.0
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 9.3e-79 298.1 286 55.2
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 9.3e-79 298.1 298 52.3
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 9.3e-79 298.1 357 49.0
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.6e-78 297.4 336 50.0
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.6e-78 297.4 296 52.7
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.1e-78 297.0 296 52.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.7e-78 296.6 305 51.1
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 3.5e-78 296.2 349 47.3
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 4.6e-78 295.8 324 48.1
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 2.3e-77 293.5 322 49.4
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 2.3e-77 293.5 287 53.3
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 3.9e-77 292.7 316 51.3
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 3.9e-77 292.7 262 56.5
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.9e-77 292.7 233 60.5
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.1e-77 292.4 286 52.1
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.1e-76 291.2 323 48.9
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.5e-76 290.0 286 51.7
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.3e-76 289.3 321 51.4
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 2.1e-75 287.0 320 48.4
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 6.9e-74 282.0 325 45.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.2e-73 281.2 255 58.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.7e-72 277.3 271 52.8
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.8e-72 276.2 334 45.5
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.4e-71 274.2 321 49.8
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.4e-71 273.5 291 48.8
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 5.4e-71 272.3 318 46.5
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.2e-70 271.2 281 49.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.2e-70 271.2 356 43.8
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 2.7e-70 270.0 263 53.2
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 9.6e-68 261.5 398 42.2
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 3.4e-65 253.1 217 59.4
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 3.4e-65 253.1 235 54.9
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 4.5e-65 252.7 310 42.9
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.9e-64 250.0 238 54.6
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.9e-64 250.0 280 45.4
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 6.4e-64 248.8 378 40.7
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 8.4e-64 248.4 282 45.0
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 3.2e-63 246.5 224 59.8
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 4.2e-63 246.1 287 42.9
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.2e-62 244.6 284 44.4
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.6e-62 244.2 287 45.3
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.1e-62 243.8 317 42.3
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.7e-62 243.4 281 44.1
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 4.6e-62 242.7 311 45.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 4.6e-62 242.7 289 45.3
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 6.0e-62 242.3 317 42.3
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 6.0e-62 242.3 314 42.0
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 7.9e-62 241.9 305 42.0
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 7.9e-62 241.9 318 42.8
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.3e-61 241.1 310 41.0
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.3e-61 241.1 284 43.3
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.3e-61 241.1 290 46.2
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.3e-61 241.1 289 45.0
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.8e-61 240.7 287 42.9
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 6.7e-61 238.8 310 41.3
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.5e-60 237.7 329 40.1
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.1e-59 233.8 310 40.3
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.1e-59 233.8 310 40.3
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 4.0e-58 229.6 210 60.0
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.2e-57 228.0 260 48.1
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.6e-57 226.9 247 45.7
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.6e-57 226.9 241 49.8
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.1e-55 221.5 287 42.9
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-55 221.5 287 42.5
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-55 221.5 287 42.9
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 9.3e-55 218.4 285 42.5
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.6e-54 217.6 205 52.7
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.0e-53 214.9 287 39.4
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.5e-52 210.3 308 39.3
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.6e-51 207.6 375 37.9
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 3.7e-51 206.5 287 40.1
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.3e-51 205.7 171 59.6
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.1e-50 204.9 322 38.2
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 5.3e-50 202.6 140 70.0
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 6.9e-50 202.2 242 47.5
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.9e-48 196.8 182 56.6
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.3e-43 181.4 205 46.8
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.8e-43 180.3 210 50.5
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.8e-43 179.5 289 45.0
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.1e-42 178.3 270 41.1
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.2e-40 170.6 163 53.4
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.9e-40 170.2 132 63.6
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.2e-39 166.8 217 46.1
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.3e-37 160.6 486 29.0
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 7.0e-34 149.1 170 45.3
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.5e-33 147.9 293 33.4
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.4e-33 146.7 160 51.2
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 5.9e-33 146.0 182 48.9
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.2e-32 144.1 170 47.1
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 6.5e-32 142.5 139 52.5
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.4e-31 141.4 314 29.9
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 4.1e-26 123.2 232 35.8
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 3.5e-25 120.2 293 30.7
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.8e-24 116.7 122 53.3
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 4.2e-23 113.2 201 35.3
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 5.5e-23 112.8 217 31.8
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 7.0e-18 95.9 72 63.9
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.9e-17 92.8 241 26.6
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 7.7e-17 92.4 132 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 5.0e-16 89.7 224 28.1
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.5e-15 88.2 101 50.5
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.0e-13 80.1 97 50.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 2.0e-12 77.8 177 31.1
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 3.7e-11 73.6 97 37.1
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 3.7e-11 73.6 177 29.4
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 3.7e-11 73.6 177 29.4
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 4.8e-11 73.2 204 28.4
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 7.0e-10 69.3 112 33.9
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.7e-09 67.4 102 38.2
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 7.7e-09 65.9 97 39.2
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 1.7e-08 64.7 39 69.2
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.3e-08 64.3 250 26.0
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 3.8e-08 63.5 92 42.4
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 4.2e-07 60.1 114 32.5
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 1.2e-06 58.5 68 44.1


User provided reference genes

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