Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 0.0e+00 1643.2 879 100.0
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 0.0e+00 1179.5 871 76.2
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 0.0e+00 1136.7 878 71.6
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 0.0e+00 1130.5 887 72.8
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 0.0e+00 1130.5 880 73.8
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 0.0e+00 1117.4 887 71.8
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 5.0e-301 1037.7 878 67.1
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 6.8e-298 1027.3 888 66.1
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 1.3e-280 969.9 888 62.5
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 4.9e-280 968.0 871 62.2
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 3.3e-276 955.3 876 61.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 8.4e-272 940.6 879 61.0
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.4e-271 939.1 905 62.7
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.5e-268 929.9 890 62.7
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 4.3e-268 928.3 878 60.9
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 8.4e-264 914.1 885 61.1
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.1e-263 913.7 863 60.7
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 7.9e-262 907.5 848 61.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 8.7e-261 904.0 828 60.9
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 6.2e-259 897.9 855 60.8
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.8e-258 896.3 890 59.3
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 6.9e-258 894.4 887 59.3
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.5e-257 893.3 844 62.2
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.3e-256 890.2 878 59.6
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 8.4e-256 887.5 878 59.0
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 2.5e-255 885.9 879 59.3
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.6e-254 883.2 899 58.0
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.3e-253 879.4 859 59.6
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 2.5e-252 875.9 882 58.4
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 5.7e-252 874.8 894 57.8
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.6e-251 873.2 840 61.3
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 4.0e-250 868.6 876 57.9
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 6.9e-250 867.8 895 57.2
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 3.8e-248 862.1 903 58.4
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 2.5e-247 859.4 881 57.8
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.0e-245 852.4 888 55.9
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 1.3e-243 847.0 909 55.9
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 8.2e-243 844.3 759 64.4
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.5e-241 840.1 868 57.5
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 5.9e-241 838.2 881 57.7
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.8e-240 835.5 880 56.2
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 4.2e-239 832.0 879 56.7
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 7.9e-238 827.8 883 57.2
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.4e-237 827.0 886 56.2
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.8e-237 826.6 891 55.2
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 8.8e-237 824.3 884 56.6
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.1e-236 823.9 842 57.4
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 5.7e-236 821.6 879 55.9
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 8.2e-235 817.8 879 55.9
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 9.1e-234 814.3 855 57.0
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 7.7e-233 811.2 880 55.5
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 6.5e-232 808.1 862 56.8
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 3.2e-231 805.8 892 56.3
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 3.2e-231 805.8 903 55.0
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 5.5e-231 805.1 889 55.1
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 9.4e-231 804.3 893 53.5
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.5e-228 797.0 893 53.3
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.3e-227 793.9 794 58.2
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 2.8e-227 792.7 704 63.8
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 6.3e-227 791.6 891 53.6
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 8.2e-227 791.2 865 54.9
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 8.2e-227 791.2 888 55.4
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 4.1e-226 788.9 885 54.5
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 9.1e-226 787.7 863 55.5
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.5e-225 786.9 882 54.6
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 6.5e-224 781.6 871 54.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.5e-224 781.2 885 55.0
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 8.5e-224 781.2 856 54.3
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 3.2e-223 779.2 883 54.8
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 3.6e-222 775.8 850 54.6
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.7e-222 775.4 883 54.5
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.1e-220 770.8 848 54.8
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.7e-219 766.9 883 53.5
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 2.2e-219 766.5 882 54.2
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.4e-218 763.1 883 53.8
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 5.3e-218 761.9 825 54.4
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 7.7e-217 758.1 885 52.4
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.9e-215 753.4 789 55.5
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.2e-214 750.7 880 51.2
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 3.6e-214 749.2 880 53.3
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 8.0e-214 748.0 862 53.4
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 2.3e-213 746.5 877 52.2
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 1.2e-209 734.2 844 52.5
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 5.9e-209 731.9 866 51.8
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 4.2e-207 725.7 868 51.6
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 9.4e-207 724.5 853 51.0
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.2e-204 717.6 843 50.5
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.0e-204 716.8 893 50.3
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 4.9e-203 712.2 861 50.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.1e-202 711.1 531 74.0
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 2.4e-202 709.9 861 51.3
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 2.7e-201 706.4 878 50.5
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.7e-200 703.7 864 50.3
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.8e-197 693.7 841 50.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.3e-197 693.3 860 49.5
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.7e-196 688.7 621 61.7
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.3e-195 687.6 860 49.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.9e-193 678.7 852 48.8
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.7e-192 677.2 872 49.7
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 3.4e-188 662.9 860 47.7
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 2.4e-186 656.8 847 48.3
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 3.2e-186 656.4 725 53.0
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 5.6e-183 645.6 836 48.2
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 8.1e-182 641.7 843 47.3
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-181 641.0 873 45.7
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 8.9e-181 638.3 885 45.6
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 2.6e-180 636.7 861 47.2
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 7.3e-175 618.6 834 47.4
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 1.8e-173 614.0 875 46.6
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 4.0e-173 612.8 662 57.9
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 4.4e-172 609.4 856 45.8
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.3e-168 597.8 850 46.0
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.1e-168 595.9 833 45.5
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.5e-167 594.3 635 57.5
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 8.4e-163 578.6 881 43.8
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.1e-158 563.9 860 45.2
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.7e-155 554.3 1015 40.1
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 4.9e-155 552.7 875 44.5
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.4e-138 498.0 402 70.9
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.8e-128 464.5 839 40.8
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.1e-122 445.3 459 57.5
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 6.7e-120 436.0 877 38.5
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 4.5e-116 423.3 1016 33.4
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 7.7e-116 422.5 761 40.5
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 2.7e-113 414.1 948 35.9
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 7.4e-111 406.0 479 51.1
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 3.5e-100 370.5 957 34.0
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.5e-98 363.2 248 77.0
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 5.2e-96 356.7 343 57.7
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.5e-95 355.1 286 67.8
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 1.8e-93 348.2 835 34.1
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.2e-92 345.5 349 57.0
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 4.0e-80 303.9 881 31.7
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 4.0e-80 303.9 881 31.7
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 7.0e-77 293.1 963 28.6
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 1.6e-65 255.4 186 68.8
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 8.9e-64 249.6 156 76.3
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 6.4e-62 243.4 749 31.6
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 2.1e-60 238.4 439 37.8
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 4.7e-57 227.3 428 40.0
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 4.0e-56 224.2 856 27.9
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 2.2e-54 218.4 421 38.7
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 6.4e-54 216.9 344 42.4
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-53 216.1 421 38.7
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.9e-50 205.3 422 37.4
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-49 202.2 435 38.9
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 8.1e-49 199.9 326 47.9
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 5.2e-48 197.2 218 50.0
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 5.8e-47 193.7 383 38.4
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.2e-45 187.6 176 61.9
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.6e-44 184.1 384 35.4
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.3e-43 181.8 171 57.9
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 3.1e-40 171.4 251 45.8
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 8.4e-38 163.3 192 51.0
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.1e-37 162.9 456 33.1
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.4e-37 161.8 368 34.0
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 4.6e-36 157.5 692 26.7
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.7e-35 153.7 204 43.6
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.5e-34 152.5 166 54.2
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 3.3e-34 151.4 131 60.3
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.8e-32 145.6 953 24.3
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.7e-30 139.0 123 58.5
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 8.7e-27 126.7 131 54.2
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.8e-25 121.7 327 33.0
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 3.7e-25 121.3 328 33.2
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.0e-24 117.9 122 61.5
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 2.5e-21 108.6 799 23.7
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 9.3e-21 106.7 203 37.4
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 1.2e-20 106.3 342 34.5
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 8.7e-19 100.1 323 30.3
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-18 98.6 323 30.0
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 5.7e-18 97.4 82 63.4
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.9e-14 85.1 204 36.8
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.1e-10 73.2 81 44.4
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 3.3e-10 71.6 78 47.4
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 2.4e-08 65.5 127 41.7
Actinidia24816 Actinidia chinensis HOM05D056392 ORTHO05D056303 2.9e-06 58.5 117 42.7


User provided reference genes

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