Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 3.5e-118 428.3 220 100.0
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 1.2e-110 403.3 221 94.1
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 3.0e-101 372.1 220 85.0
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 6.6e-101 370.9 220 85.0
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 6.6e-101 370.9 220 85.0
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.1e-100 370.2 222 83.8
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 1.5e-100 369.8 222 83.8
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.5e-100 369.8 220 82.3
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 1.9e-100 369.4 218 84.9
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 3.3e-100 368.6 220 83.6
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 4.3e-100 368.2 222 84.2
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 5.6e-100 367.9 222 83.8
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 7.3e-100 367.5 222 83.8
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 9.6e-100 367.1 219 83.6
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 9.6e-100 367.1 220 83.6
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.3e-99 366.7 222 83.8
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.6e-99 366.3 222 83.8
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 4.8e-99 364.8 221 83.3
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 8.1e-99 364.0 221 82.8
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 8.1e-99 364.0 222 83.3
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 8.1e-99 364.0 222 83.3
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.8e-98 362.8 220 81.8
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.8e-98 362.8 218 84.4
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 4.0e-98 361.7 221 82.8
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 5.3e-98 361.3 220 82.3
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 9.0e-98 360.5 220 81.4
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.2e-97 360.1 221 81.9
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.6e-97 359.0 219 83.1
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 3.4e-97 358.6 221 82.4
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 5.8e-97 357.8 221 80.5
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 82.3
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 7.6e-97 357.5 215 84.7
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 9.9e-97 357.1 217 82.5
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 82.3
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.7e-96 356.3 220 82.3
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 2.2e-96 355.9 214 82.2
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 2.2e-96 355.9 221 82.8
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.9e-96 355.5 215 82.8
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 2.9e-96 355.5 218 83.0
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 3.8e-96 355.1 220 80.0
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 3.8e-96 355.1 221 81.9
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 6.4e-96 354.4 220 81.4
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.4e-96 354.4 218 82.6
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 8.4e-96 354.0 221 82.4
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 8.4e-96 354.0 221 82.4
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 8.4e-96 354.0 221 82.4
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 8.4e-96 354.0 220 81.4
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.1e-95 353.6 221 81.9
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 1.1e-95 353.6 221 81.9
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.4e-95 353.2 221 81.4
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.9e-95 352.8 221 81.0
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 79.1
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 83.2
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 79.5
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 3.2e-95 352.1 218 79.8
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 4.2e-95 351.7 221 81.9
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 4.2e-95 351.7 216 83.3
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 4.2e-95 351.7 216 83.3
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 4.2e-95 351.7 221 82.4
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 5.4e-95 351.3 221 81.4
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 5.4e-95 351.3 221 81.4
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 7.1e-95 350.9 221 80.5
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 9.3e-95 350.5 221 81.0
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 9.3e-95 350.5 214 81.3
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 1.2e-94 350.1 221 81.4
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.2e-94 350.1 218 81.2
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 218 81.2
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 218 81.2
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 1.6e-94 349.7 221 81.0
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.6e-94 349.7 218 79.4
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.1e-94 349.4 221 80.5
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.1e-94 349.4 218 81.2
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 2.7e-94 349.0 221 81.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 76.8
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 4.6e-94 348.2 216 82.4
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 4.6e-94 348.2 220 80.0
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 6.0e-94 347.8 220 80.5
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.0e-93 347.1 221 78.7
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.3e-93 346.7 221 78.7
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.3e-93 346.7 218 79.8
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.3e-93 345.9 221 80.1
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 3.9e-93 345.1 218 78.4
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 3.9e-93 345.1 218 79.4
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 5.1e-93 344.7 220 77.7
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 5.1e-93 344.7 218 78.4
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 5.1e-93 344.7 218 78.4
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 5.1e-93 344.7 219 79.9
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 5.1e-93 344.7 219 80.8
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.6e-93 344.4 219 78.5
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 8.7e-93 344.0 213 79.8
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 8.7e-93 344.0 221 80.1
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.5e-92 343.2 219 79.5
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 1.5e-92 343.2 221 77.4
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 78.0
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 79.1
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.9e-92 342.8 220 79.1
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 1.9e-92 342.8 213 79.8
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.5e-92 342.4 226 79.2
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.5e-92 342.4 221 78.7
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 2.5e-92 342.4 220 75.5
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.3e-92 342.0 221 79.2
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 3.3e-92 342.0 213 78.4
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 5.6e-92 341.3 231 77.1
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 9.6e-92 340.5 221 77.8
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 9.6e-92 340.5 222 79.3
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.6e-91 339.7 219 76.3
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.1e-91 339.3 213 78.9
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 3.6e-91 338.6 218 77.5
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 6.2e-91 337.8 213 78.9
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 1.1e-90 337.0 221 78.7
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 1.8e-90 336.3 203 82.3
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 4.0e-90 335.1 221 78.7
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.3e-90 334.7 221 76.0
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 9.0e-90 334.0 213 77.9
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 1.2e-89 333.6 213 77.9
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 1.5e-89 333.2 220 79.1
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.0e-89 332.8 222 77.0
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 2.2e-88 329.3 220 75.9
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 2.9e-88 328.9 216 75.0
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 6.2e-83 311.2 226 71.7
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 4.0e-82 308.5 220 70.9
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 5.3e-82 308.1 165 90.3
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.6e-81 305.8 175 82.3
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 7.1e-79 297.7 193 76.7
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.7e-78 295.8 195 74.9
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 3.7e-75 285.4 192 74.5
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 1.8e-74 283.1 163 83.4
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.2e-73 280.4 169 79.9
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.2e-72 276.2 176 77.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.1e-71 273.9 165 81.2
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.5e-71 272.7 226 64.2
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.6e-70 270.0 224 64.3
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 2.8e-67 259.2 220 65.5
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.3e-61 239.6 222 60.4
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.4e-58 230.3 221 59.7
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 6.9e-58 228.0 210 57.1
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.0e-49 199.9 139 79.1
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 4.5e-49 198.7 217 52.1
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 5.5e-47 191.8 171 57.3
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 1.8e-45 186.8 127 74.8
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 6.7e-45 184.9 150 59.3
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.4e-26 124.0 106 67.0
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.3e-15 86.3 58 72.4
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.3e-15 86.3 58 72.4
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.7e-09 66.6 58 62.1
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.7e-08 63.9 58 65.5
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.5e-07 60.8 56 55.4


User provided reference genes

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