Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 0.0e+00 1978.4 997 100.0
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 0.0e+00 1491.5 953 82.0
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 0.0e+00 1156.0 939 67.1
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 0.0e+00 1098.6 973 60.9
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1087.8 1007 59.5
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1082.8 977 60.4
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 0.0e+00 1075.8 977 61.6
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 4.8e-311 1071.2 951 60.1
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 8.2e-311 1070.5 946 61.8
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.6e-309 1065.4 971 59.4
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.1e-307 1060.1 974 59.3
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 5.3e-307 1057.7 974 60.1
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 4.2e-304 1048.1 974 58.9
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 2.1e-303 1045.8 972 59.6
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 4.0e-302 1041.6 971 59.5
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 3.7e-300 1035.0 965 59.3
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 1.8e-299 1032.7 978 56.9
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 2.0e-298 1029.2 939 58.6
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 2.7e-298 1028.9 974 57.8
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 7.7e-298 1027.3 964 57.7
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 1.1e-296 1023.5 975 56.9
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.6e-295 1019.6 949 58.0
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 6.1e-295 1017.7 961 56.8
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.3e-294 1015.8 962 58.3
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 8.8e-294 1013.8 973 57.5
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.3e-292 1010.0 965 57.3
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 2.2e-292 1009.2 985 57.0
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 4.9e-292 1008.1 965 57.2
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.3e-292 1007.7 948 57.5
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.4e-291 1006.5 942 59.0
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 3.1e-291 1005.4 968 56.7
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.2e-290 1003.4 971 56.3
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 2.0e-290 1002.7 949 58.1
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.0e-290 1002.7 965 57.1
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 2.0e-290 1002.7 943 57.6
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.7e-290 1002.3 960 57.2
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 5.9e-290 1001.1 984 56.6
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 6.6e-289 997.7 995 56.3
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.5e-288 996.5 975 56.1
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.5e-288 996.5 895 58.9
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 4.2e-288 995.0 1012 55.7
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.6e-287 993.0 978 55.7
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.8e-287 992.3 962 55.6
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.8e-286 989.6 670 78.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 4.0e-286 988.4 974 56.3
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.2e-285 986.9 977 56.6
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.5e-285 986.5 967 56.8
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 6.3e-284 981.1 946 56.3
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.1e-283 980.3 973 54.3
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 3.2e-283 978.8 954 56.3
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 5.9e-282 974.5 822 63.1
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 7.8e-282 974.2 905 59.0
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.0e-281 973.8 980 55.3
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 2.9e-281 972.2 963 55.9
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.5e-280 969.9 979 55.2
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.5e-280 969.9 979 55.2
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 5.6e-280 968.0 974 54.8
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 7.3e-280 967.6 983 55.5
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.7e-279 964.9 959 54.1
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 5.8e-277 958.0 951 55.1
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 6.4e-276 954.5 951 54.3
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 2.4e-275 952.6 951 55.9
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.5e-272 943.3 984 53.8
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.9e-272 943.0 951 56.3
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 3.3e-272 942.2 963 53.2
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.2e-271 940.3 1017 53.3
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 2.1e-271 939.5 977 54.2
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 3.6e-271 938.7 977 54.1
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 4.7e-271 938.3 941 56.7
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.1e-270 937.2 964 53.0
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.8e-270 936.4 1004 52.6
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 6.8e-270 934.5 966 55.1
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.6e-269 932.6 975 55.4
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 7.5e-269 931.0 968 53.8
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 1.7e-268 929.9 962 52.8
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.7e-268 928.7 971 54.1
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 8.3e-268 927.5 960 52.6
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.4e-267 926.8 971 54.0
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.2e-267 925.6 739 67.1
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 6.0e-266 921.4 801 62.3
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.7e-265 919.8 973 54.5
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 4.3e-264 915.2 951 54.3
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.6e-261 906.0 937 52.4
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 7.6e-261 904.4 966 54.1
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 3.7e-260 902.1 942 52.8
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.0e-257 894.0 665 67.5
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.5e-256 890.2 968 53.6
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.9e-256 889.8 889 54.4
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 3.6e-255 885.6 965 49.9
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 3.1e-254 882.5 940 52.1
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.7e-252 876.7 961 51.3
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 2.1e-250 869.8 671 66.2
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.7e-250 869.4 839 57.3
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.5e-250 869.0 1003 51.4
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 4.6e-250 868.6 700 63.4
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 5.1e-249 865.1 942 50.5
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 1.4e-246 857.1 946 50.2
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 5.3e-246 855.1 961 49.6
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 6.9e-246 854.7 966 50.7
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 9.3e-243 844.3 967 49.1
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.2e-229 800.8 933 48.0
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 3.4e-229 799.3 688 61.0
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.0e-225 787.7 990 46.4
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.5e-216 757.3 845 50.5
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.7e-216 754.6 716 59.5
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.4e-209 734.2 950 45.6
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.3e-207 727.6 958 45.4
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.2e-207 726.9 969 46.9
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.8e-206 723.8 973 44.6
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 9.7e-200 701.4 779 49.3
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.3e-199 701.0 462 77.1
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.9e-188 663.3 753 53.1
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.6e-184 650.2 446 73.1
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 6.1e-178 629.0 684 50.9
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.5e-176 624.4 706 51.3
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.9e-171 607.4 765 45.4
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 6.8e-161 572.4 849 41.9
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 2.7e-157 560.5 621 48.3
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 4.6e-157 559.7 565 52.7
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 8.6e-156 555.4 980 38.5
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.3e-151 541.6 955 40.6
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.7e-127 461.5 698 40.8
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.1e-117 427.9 520 48.8
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 3.1e-113 414.1 741 36.2
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.2e-112 412.1 545 47.7
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 4.3e-107 393.7 287 69.7
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.8e-100 371.7 535 42.2
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.9e-100 370.5 241 80.5
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 8.7e-100 369.4 280 67.1
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 3.0e-92 344.4 433 46.0
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 5.0e-79 300.4 223 68.2
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.5e-75 288.9 177 81.4
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 2.0e-75 288.5 245 60.8
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.7e-74 285.4 244 61.5
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 4.2e-62 244.2 238 52.9
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.7e-61 240.7 132 88.6
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.5e-54 219.2 133 76.7
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.5e-54 218.4 170 67.1
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 4.4e-51 207.6 174 56.3
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 2.7e-48 198.4 313 43.1
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.1e-46 193.0 275 43.6
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 2.6e-43 181.8 114 71.9
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 2.8e-37 161.8 551 28.1
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 6.2e-37 160.6 199 50.8
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 5.1e-31 141.0 80 83.8
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 8.7e-23 113.6 628 25.5
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 1.5e-22 112.8 301 33.2
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 1.2e-16 93.2 324 28.7
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.6e-13 82.8 42 90.5
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.2e-11 76.6 100 42.0
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 1.3e-10 73.2 598 22.1
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 4.6e-08 64.7 47 57.4


User provided reference genes

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