Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 0.0e+00 1163.7 625 100.0
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.1e-224 782.7 631 70.4
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 9.8e-166 587.8 630 56.8
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.7e-165 587.0 537 61.1
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 8.9e-151 538.1 622 51.8
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 3.4e-150 536.2 564 54.6
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 7.5e-150 535.0 566 54.6
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.9e-148 530.4 561 54.0
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.7e-146 523.9 623 51.0
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.9e-146 522.7 634 50.9
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 6.6e-146 521.9 552 53.4
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 2.5e-145 520.0 561 53.5
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 3.4e-142 509.6 566 52.8
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 5.8e-142 508.8 627 49.9
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 1.3e-141 507.7 649 48.8
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 8.4e-141 505.0 535 53.6
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 6.0e-139 498.8 541 53.8
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.4e-135 487.6 567 50.8
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.1e-135 486.5 565 50.1
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 4.0e-135 486.1 565 49.9
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 6.9e-135 485.3 565 50.1
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 4.4e-134 482.6 519 53.9
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 2.9e-133 479.9 556 50.9
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 2.1e-131 473.8 550 50.7
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 6.6e-130 468.8 573 48.2
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.5e-129 466.8 547 50.8
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.5e-129 466.8 547 50.8
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 6.2e-128 462.2 420 59.5
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 6.2e-128 462.2 569 48.7
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.4e-127 461.1 623 47.5
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.8e-127 460.7 544 48.7
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.8e-127 460.7 568 49.3
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 3.1e-127 459.9 570 48.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 4.0e-127 459.5 546 50.7
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.5e-126 457.6 561 49.9
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 7.6e-126 455.3 434 59.2
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.3e-125 454.5 575 47.1
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.7e-125 454.1 564 48.6
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.9e-125 453.4 634 45.7
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 3.8e-125 453.0 548 48.9
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 6.4e-125 452.2 581 47.0
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 5.4e-124 449.1 512 50.2
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 7.1e-124 448.7 452 55.8
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 9.3e-124 448.4 563 49.2
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.6e-123 447.6 560 48.9
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.5e-123 446.4 612 46.7
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.0e-122 444.9 461 52.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.0e-122 444.9 567 50.3
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 6.7e-122 442.2 590 44.7
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 3.3e-121 439.9 579 45.3
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 4.3e-121 439.5 560 47.7
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.3e-120 438.0 601 45.1
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.6e-120 437.6 582 46.0
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 4.8e-120 436.0 540 47.4
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 6.2e-120 435.6 541 49.0
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 9.0e-119 431.8 559 45.8
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.4e-118 429.9 429 55.5
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 9.9e-118 428.3 425 56.7
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.3e-117 427.9 524 49.4
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 9.3e-116 421.8 559 45.6
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 9.3e-116 421.8 436 52.1
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.6e-115 421.0 547 45.7
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 4.6e-115 419.5 557 44.9
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 6.0e-115 419.1 560 47.3
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 6.7e-114 415.6 440 53.4
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 1.5e-113 414.5 619 43.0
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.9e-113 414.1 536 47.6
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.1e-112 410.6 547 46.8
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 4.8e-112 409.5 554 44.8
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.4e-111 407.9 634 43.2
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 6.9e-111 405.6 550 43.8
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 9.0e-111 405.2 538 46.3
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.6e-110 403.7 530 47.4
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 3.4e-110 403.3 516 45.9
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.8e-110 402.5 580 42.8
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.5e-108 397.1 561 44.2
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.3e-106 391.3 464 55.2
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.0e-106 390.2 504 46.2
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.5e-105 387.9 613 41.1
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.1e-103 379.8 615 40.8
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.9e-103 379.0 560 41.6
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 2.0e-102 377.5 521 44.3
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.0e-101 375.2 464 47.4
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 8.5e-101 372.1 600 41.2
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 4.2e-100 369.8 520 44.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 7.2e-100 369.0 516 45.2
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.1e-97 361.7 578 39.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 3.1e-95 353.6 292 59.6
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 6.9e-95 352.4 508 43.7
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 6.9e-95 352.4 433 50.3
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.0e-93 348.6 565 40.9
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 3.8e-93 346.7 460 43.9
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 6.5e-93 345.9 477 48.0
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.1e-92 345.1 616 40.6
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.6e-91 341.3 538 38.8
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 2.7e-91 340.5 527 41.6
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.7e-91 340.5 523 41.3
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 6.1e-91 339.3 524 41.0
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 7.9e-91 339.0 523 41.1
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 7.9e-91 339.0 523 41.1
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 2.3e-90 337.4 523 40.9
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.3e-87 326.2 285 64.9
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 3.6e-83 313.5 535 38.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 6.1e-83 312.8 469 42.6
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.3e-81 307.0 520 39.4
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 8.2e-80 302.4 239 64.0
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 3.1e-79 300.4 562 38.4
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.1e-79 300.1 535 38.9
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 5.0e-77 293.1 563 37.1
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 6.5e-77 292.7 523 37.5
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.6e-67 261.5 375 45.9
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 8.3e-64 249.2 361 45.4
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.1e-63 246.9 395 42.3
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.7e-62 244.2 350 42.6
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.6e-61 239.6 236 56.8
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 7.2e-60 236.1 562 32.6
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 4.0e-58 230.3 176 64.2
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.1e-47 195.7 284 41.2
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.0e-45 189.1 293 37.2
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.5e-44 185.3 362 34.8
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 4.3e-44 183.7 155 59.4
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 5.6e-44 183.3 275 38.9
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.4e-39 168.7 413 32.7
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 3.0e-37 161.0 244 38.5
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 8.6e-37 159.5 310 34.5
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.6e-35 155.2 310 34.2
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 3.1e-34 151.0 318 33.3
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.1e-31 140.6 212 38.7
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.6e-30 138.7 213 36.6
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 6.0e-30 136.7 276 32.6
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.0e-29 136.0 89 67.4
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.0e-29 136.0 89 67.4
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.7e-29 135.2 131 50.4
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.2e-23 114.4 144 50.0
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.6e-22 110.5 299 27.4
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.9e-21 107.5 167 44.9
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-18 98.6 299 27.1
Rhsim10G0134100 Rhododendron simsii HOM05D004947 ORTHO05D340173 9.9e-17 92.8 120 55.8
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 8.4e-16 89.7 327 26.3
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 7.8e-14 83.2 304 25.7
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 7.8e-14 83.2 304 25.7
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 7.8e-14 83.2 304 25.7
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 6.6e-13 80.1 316 24.4
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 6.6e-13 80.1 316 24.4
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.4e-07 62.4 69 40.6


User provided reference genes

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