Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 0.0e+00 1616.7 818 100.0
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.5e-283 979.5 693 75.0
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 2.9e-242 842.4 810 59.9
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.8e-242 842.0 818 59.5
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 5.5e-241 838.2 818 59.4
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 9.3e-241 837.4 805 59.6
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 3.2e-217 759.2 683 61.1
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.8e-196 690.3 805 51.6
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 6.1e-192 675.2 827 49.2
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 4.8e-189 665.6 800 48.2
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.1e-188 664.5 845 49.3
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 4.5e-187 659.1 827 48.0
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.2e-185 652.5 816 48.2
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 5.5e-185 652.1 809 48.3
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 6.1e-184 648.7 794 48.6
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.4e-183 647.5 814 47.1
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.0e-183 646.4 811 47.3
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 8.8e-183 644.8 801 47.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.7e-181 640.6 824 46.6
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 2.8e-181 639.8 814 47.1
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 4.1e-180 636.0 799 48.4
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 9.2e-180 634.8 827 47.3
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.2e-179 634.4 800 47.2
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.9e-177 627.1 796 48.2
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.2e-174 617.8 816 47.3
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 9.8e-174 614.8 811 46.7
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 3.7e-173 612.8 794 47.1
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.1e-172 611.3 809 47.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.7e-171 606.7 819 45.7
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 7.8e-171 605.1 793 46.7
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 3.0e-170 603.2 802 46.4
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.0e-170 603.2 800 45.6
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.9e-170 602.8 809 46.6
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 3.9e-170 602.8 809 46.6
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 8.6e-170 601.7 821 44.6
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 3.3e-169 599.7 799 44.7
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 3.3e-169 599.7 821 45.3
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 5.6e-169 599.0 802 46.9
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 7.3e-169 598.6 797 45.7
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.6e-168 597.4 808 44.4
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 2.1e-168 597.0 797 44.4
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 4.7e-168 595.9 819 44.9
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 8.0e-168 595.1 797 44.4
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.3e-167 593.6 797 44.2
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 5.2e-167 592.4 800 46.0
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 5.8e-166 589.0 807 44.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.8e-166 588.2 796 44.5
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.7e-165 586.3 847 42.9
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 3.7e-165 586.3 806 45.4
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 4.9e-165 585.9 817 43.9
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.9e-164 583.9 806 44.8
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 2.4e-164 583.6 804 44.9
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 7.0e-164 582.0 819 44.4
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.0e-164 582.0 797 44.0
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.2e-163 581.3 804 44.9
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 2.7e-163 580.1 799 43.3
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 7.8e-163 578.6 812 45.0
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 7.8e-163 578.6 799 45.6
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 8.6e-162 575.1 813 44.6
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.2e-160 571.2 807 43.4
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 8.1e-160 568.5 627 52.8
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 2.6e-158 563.5 806 44.2
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.3e-157 561.2 811 43.0
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 1.7e-157 560.8 800 44.4
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.1e-156 558.1 800 43.1
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 2.4e-156 557.0 802 44.6
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 7.1e-156 555.4 820 43.4
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 9.2e-156 555.1 645 49.9
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 4.6e-155 552.7 819 43.2
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.3e-154 551.2 802 42.3
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 5.1e-154 549.3 819 42.9
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 8.6e-154 548.5 700 46.4
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.1e-153 548.1 808 43.1
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 2.5e-153 547.0 794 42.6
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 2.4e-151 540.4 687 46.3
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 5.2e-151 539.3 842 41.4
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.0e-150 537.3 800 42.8
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.4e-150 536.2 814 41.9
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.3e-149 534.6 795 42.3
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.7e-149 534.3 797 43.4
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 2.9e-149 533.5 697 44.2
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 7.1e-148 528.9 806 40.3
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.6e-147 527.7 821 42.5
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 3.5e-147 526.6 813 42.6
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 4.3e-145 519.6 634 48.3
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 9.6e-145 518.5 819 41.9
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.4e-143 514.6 835 40.2
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.4e-143 514.6 810 41.5
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 5.8e-142 509.2 825 40.4
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 7.6e-142 508.8 801 40.8
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 2.4e-140 503.8 820 40.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 9.3e-140 501.9 816 40.3
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 7.8e-139 498.8 630 47.1
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.3e-138 497.3 834 40.4
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.1e-137 495.0 813 39.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 3.3e-137 493.4 817 39.9
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 7.3e-137 492.3 820 40.6
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 9.6e-137 491.9 820 40.0
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 4.0e-135 486.5 807 39.9
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.2e-134 485.0 819 39.7
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.0e-134 484.2 812 39.8
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.0e-134 484.2 830 39.6
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 3.4e-134 483.4 818 39.9
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 7.1e-132 475.7 742 40.3
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 9.3e-132 475.3 806 39.6
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.0e-130 471.9 654 44.3
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.8e-130 471.1 807 39.5
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 3.0e-130 470.3 807 39.4
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 6.4e-125 452.6 792 39.0
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 9.3e-124 448.7 560 44.8
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.6e-120 438.0 731 39.5
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 4.2e-116 423.3 798 36.0
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 5.5e-116 422.9 850 35.1
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.7e-115 420.6 540 48.3
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 1.1e-103 382.1 558 40.5
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 9.1e-95 352.4 807 33.8
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.6e-86 325.1 822 32.2
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.7e-85 321.6 893 29.1
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 7.2e-84 316.2 853 30.9
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 2.1e-83 314.7 555 35.5
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.3e-80 305.4 405 43.0
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.7e-80 305.1 837 30.2
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.6e-78 298.5 563 34.3
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 6.6e-69 266.5 589 32.8
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 8.6e-45 186.4 222 48.6
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 3.4e-41 174.5 257 40.9
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 1.2e-35 156.0 96 69.8
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.2e-35 156.0 447 30.6
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 7.6e-33 146.7 303 31.7
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 6.4e-32 143.7 771 23.7
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.6e-27 129.0 143 47.6
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 9.0e-26 123.2 138 50.0
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 3.4e-25 121.3 123 49.6
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.1e-23 116.3 143 45.5
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.1e-20 106.3 256 32.4
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 7.1e-15 87.0 58 69.0
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.1e-07 63.2 176 31.2
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.9e-07 62.4 134 38.8
MELO3C007260.2 Cucumis melo HOM05D001439 ORTHO05D002726 9.3e-07 60.1 61 47.5
CAN.G919.4 Capsicum annuum HOM05D001312 ORTHO05D001832 1.2e-06 59.7 162 27.8
CsaV3_6G050410 Cucumis sativus L. HOM05D001439 ORTHO05D002726 1.2e-06 59.7 61 47.5
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 2.1e-06 58.9 159 27.0
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 2.7e-06 58.5 76 51.3
Sed0000156 Sechium edule HOM05D001439 ORTHO05D002726 2.7e-06 58.5 61 47.5
Solyc06g074640.2 Solanum lycopersicum HOM05D001312 ORTHO05D001832 2.7e-06 58.5 174 28.7
PSO063G1518 Papaver somniferum HOM05D001312 ORTHO05D001832 3.5e-06 58.2 234 25.2
Potri.004G048675 Populus trichocarpa HOM05D001439 ORTHO05D002726 3.5e-06 58.2 77 44.2
Sopen06g031060 Solanum pennellii HOM05D001312 ORTHO05D001832 3.5e-06 58.2 174 28.7
CAN.G209.1 Capsicum annuum HOM05D001439 ORTHO05D002726 4.6e-06 57.8 61 47.5
CiPaw.09G063400 Carya illinoinensis HOM05D001439 ORTHO05D002726 4.6e-06 57.8 61 47.5
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 4.6e-06 57.8 170 28.2
Sed0010792 Sechium edule HOM05D001439 ORTHO05D002726 4.6e-06 57.8 61 47.5
Solyc07g053610.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 4.6e-06 57.8 61 47.5
Sopen07g027560 Solanum pennellii HOM05D001439 ORTHO05D002726 4.6e-06 57.8 61 47.5
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 4.6e-06 57.8 61 49.2
Lalb_Chr16g0384011 Lupinus albus HOM05D001439 ORTHO05D002726 6.0e-06 57.4 61 47.5
Potri.011G057700 Populus trichocarpa HOM05D001439 ORTHO05D002726 6.0e-06 57.4 61 47.5
Sabra04G0030600 Salix brachista HOM05D001439 ORTHO05D002726 6.0e-06 57.4 61 47.5
SMO115G0301 Selaginella moellendorffii HOM05D001312 ORTHO05D001832 6.0e-06 57.4 206 26.2


User provided reference genes

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