Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1696.0 796 100.0
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1349.3 757 84.3
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1297.0 762 78.6
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1293.1 761 78.7
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1288.1 767 78.4
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1251.5 759 75.2
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1247.6 760 75.9
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1241.5 759 74.7
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1241.5 762 74.4
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1236.1 753 75.8
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1234.2 762 74.7
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1232.6 759 74.3
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1231.1 790 72.4
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1230.3 759 74.3
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1229.5 762 74.7
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1225.3 761 72.8
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1218.4 758 73.7
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1214.1 762 73.9
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1213.4 761 73.9
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1203.3 761 71.7
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1201.8 761 71.7
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1200.3 761 72.7
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1192.6 762 71.9
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1192.2 761 70.7
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1189.5 760 71.1
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1189.1 762 72.4
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1187.9 761 71.4
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1187.6 755 72.7
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1187.6 762 71.7
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1187.2 760 71.1
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1186.4 756 71.8
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1181.0 760 71.8
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1179.5 758 72.0
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1179.5 760 72.1
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1177.9 760 70.7
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1177.5 754 72.0
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1176.4 761 71.6
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1175.6 754 71.4
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1168.3 761 69.3
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1166.0 753 69.6
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1166.0 752 71.1
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1164.4 756 70.4
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1162.5 758 69.8
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1156.7 762 69.8
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1154.0 772 69.4
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1153.7 761 67.9
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1152.1 753 70.5
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1147.9 761 69.1
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1147.1 762 69.2
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1147.1 762 68.8
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1146.3 738 71.8
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1143.3 843 65.0
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1137.9 758 69.0
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1130.2 759 70.0
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1130.2 760 68.0
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1129.4 760 68.2
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1127.1 760 67.0
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1126.7 755 66.6
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1125.2 754 67.6
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1125.2 760 68.0
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1124.8 754 67.1
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1123.6 754 66.8
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1123.6 754 66.8
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1123.2 754 66.7
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1122.5 755 66.6
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1120.9 746 67.6
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1120.5 755 67.9
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1120.1 755 66.6
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1120.1 775 67.1
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1120.1 761 66.6
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1119.8 755 66.8
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1119.4 748 67.5
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1118.2 761 66.9
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1117.1 755 67.0
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1117.1 747 67.5
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1114.8 760 67.4
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1114.8 758 67.5
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1114.0 765 69.0
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1112.8 766 67.1
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1110.1 755 66.2
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1110.1 753 66.5
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1109.4 746 68.0
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1109.0 753 66.7
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1108.2 760 65.9
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1105.9 761 66.5
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1100.1 753 68.0
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 5.4e-312 1074.7 768 63.9
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 3.8e-311 1071.2 756 66.0
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 2.7e-309 1065.1 764 63.6
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 7.3e-307 1057.0 755 64.4
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 3.0e-300 1035.0 733 64.5
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 2.6e-296 1021.9 695 68.6
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 6.4e-295 1017.3 755 64.1
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.6e-277 959.5 760 60.1
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 1.6e-261 906.4 797 53.5
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 2.3e-260 902.5 772 55.6
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 3.7e-258 895.2 771 56.3
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 1.4e-249 866.7 546 73.4
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 6.7e-236 821.2 774 49.9
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 7.9e-229 797.7 816 50.2
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.5e-211 740.3 579 60.1
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 8.1e-157 558.5 312 80.1
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 4.9e-138 496.1 267 84.6
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 2.3e-127 460.7 314 68.8
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 4.4e-118 429.9 1009 30.1
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 2.8e-88 330.9 259 58.7
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 1.3e-85 322.0 194 73.7
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 2.0e-83 314.7 350 46.3
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 6.6e-82 309.7 177 78.5
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 7.3e-81 306.2 172 80.8
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 9.5e-81 305.8 172 79.7
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 9.5e-81 305.8 172 79.7
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 4.1e-76 290.4 219 65.3
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 1.0e-74 285.8 285 50.5
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 3.7e-61 240.7 213 52.1
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.2e-56 225.7 466 32.4
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 7.6e-38 163.3 209 43.1
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 4.3e-33 147.5 195 41.5
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.1e-32 145.2 136 45.6
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.1e-32 145.2 150 48.7
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 2.1e-32 145.2 184 44.0
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 6.2e-32 143.7 68 88.2
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 9.3e-28 129.8 137 48.9
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 4.3e-25 120.9 96 60.4
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 1.4e-23 115.9 67 74.6
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 5.7e-17 94.0 106 45.3
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 7.4e-17 93.6 87 52.9
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 1.3e-16 92.8 106 45.3
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 3.7e-16 91.3 45 82.2
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.4e-15 89.4 84 53.6
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 6.9e-15 87.0 48 75.0
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 2.0e-14 85.5 45 77.8
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 9.4e-12 76.6 56 60.7


User provided reference genes

Program Settings