Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12556 Vaccinium macrocarpon HOM05D004807 ORTHO05D005915 2.4e-41 171.8 88 100.0
Rhsim03G0002400 Rhododendron simsii HOM05D004807 ORTHO05D005915 6.9e-25 117.1 69 91.3
RhsimUnG0014500 Rhododendron simsii HOM05D004807 ORTHO05D005915 6.9e-25 117.1 69 91.3
CSS0049837 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 6.5e-23 110.5 69 87.0
Actinidia27127 Actinidia chinensis HOM05D004807 ORTHO05D005915 8.4e-23 110.2 69 87.0
Lj1A1135G80 Lonicera japonica HOM05D004807 ORTHO05D005915 7.1e-22 107.1 68 86.8
Peaxi162Scf00249g00811 Petunia axillaris HOM05D004807 ORTHO05D005915 1.0e-20 103.2 68 80.9
Solyc10g080630.2 Solanum lycopersicum HOM05D004807 ORTHO05D005915 3.9e-20 101.3 68 79.4
Sopen10g031170 Solanum pennellii HOM05D004807 ORTHO05D005915 3.9e-20 101.3 68 79.4
Ciclev10011630m.g Citrus clementina HOM05D004807 ORTHO05D005915 5.1e-20 100.9 67 80.6
Nitab4.5_0001079g0110 Nicotiana tabacum HOM05D004807 ORTHO05D005915 1.1e-19 99.8 68 79.4
GSVIVG01033428001 Vitis vinifera HOM05D004807 ORTHO05D005915 3.3e-19 98.2 68 80.9
Nitab4.5_0005684g0020 Nicotiana tabacum HOM05D004807 ORTHO05D005915 5.7e-19 97.4 68 77.9
Cpa.g.sc85.18 Carica papaya HOM05D004807 ORTHO05D005915 7.4e-19 97.1 67 76.1
CAN.G128.57 Capsicum annuum HOM05D004807 ORTHO05D005915 1.6e-18 95.9 68 76.5
DCAR_017047 Daucus carota HOM05D004807 ORTHO05D005915 1.6e-18 95.9 66 80.3
Nn7g35896 Nelumbo nucifera HOM05D004807 ORTHO05D005915 3.7e-18 94.7 69 76.8
Potri.006G197200 Populus trichocarpa HOM05D004807 ORTHO05D005915 3.7e-18 94.7 67 76.1
QL07p025555 Quercus lobata HOM05D004807 ORTHO05D005915 1.4e-17 92.8 66 77.3
CANSAT64G1965 Cannabis sativa HOM05D004807 ORTHO05D005915 1.8e-17 92.4 67 73.1
Cfa020114 Carpinus fangiana HOM05D004807 ORTHO05D005915 3.1e-17 91.7 67 73.1
Thecc.05G180400 Theobroma cacao HOM05D004807 ORTHO05D005915 3.1e-17 91.7 68 76.5
Manes.08G040000 Manihot esculenta HOM05D004807 ORTHO05D005915 6.9e-17 90.5 67 71.6
Sabra06G0151700 Salix brachista HOM05D004807 ORTHO05D005915 9.0e-17 90.1 68 75.0
Actinidia01589 Actinidia chinensis HOM05D004807 ORTHO05D005915 1.5e-16 89.4 64 79.7
Migut.J01878 Erythranthe guttata HOM05D004807 ORTHO05D005915 2.0e-16 89.0 68 70.6
Actinidia22072 Actinidia chinensis HOM05D004807 ORTHO05D005915 2.6e-16 88.6 55 87.3
Gohir.A09G130500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 3.4e-16 88.2 68 73.5
Eucgr.K01882 Eucalyptus grandis HOM05D004807 ORTHO05D005915 4.5e-16 87.8 67 73.1
Gorai.006G145300 Gossypium raimondii HOM05D004807 ORTHO05D005915 4.5e-16 87.8 68 72.1
Sed0007842 Sechium edule HOM05D004807 ORTHO05D005915 4.5e-16 87.8 67 71.6
TWI74G1245 Tripterygium wilfordii HOM05D004807 ORTHO05D005915 4.5e-16 87.8 67 73.1
PGR142G0165 Punica granatum HOM05D004807 ORTHO05D005915 7.7e-16 87.0 65 72.3
CiPaw.09G026200 Carya illinoinensis HOM05D004807 ORTHO05D005915 1.3e-15 86.3 67 68.7
Haze_20075 Corylus avellana HOM05D004807 ORTHO05D005915 1.7e-15 85.9 66 68.2
CsaV3_3G038490 Cucumis sativus L. HOM05D004807 ORTHO05D005915 1.7e-15 85.9 67 70.1
CsaV3_7G005530 Cucumis sativus L. HOM05D004807 ORTHO05D005915 1.7e-15 85.9 67 70.1
Gohir.D09G126500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 1.7e-15 85.9 68 70.6
MD14G1049600 Malus domestica HOM05D004807 ORTHO05D005915 1.7e-15 85.9 68 70.6
MSTRG.19928 Avicennia marina HOM05D004807 ORTHO05D005915 2.2e-15 85.5 68 69.1
COL.COLO4_29436 Corchorus olitorius HOM05D004807 ORTHO05D005915 2.9e-15 85.1 67 73.1
PSO528G0235 Papaver somniferum HOM05D004807 ORTHO05D005915 2.9e-15 85.1 69 68.1
Sc19g0006260 Simmondsia chinensis HOM05D004807 ORTHO05D005915 3.8e-15 84.7 67 68.7
Atru.chr8.1221 Acer truncatum HOM05D004807 ORTHO05D005915 5.0e-15 84.3 67 71.6
MELO3C009593.2 Cucumis melo HOM05D004807 ORTHO05D005915 6.5e-15 84.0 67 68.7
Prupe.7G085900 Prunus persica HOM05D004807 ORTHO05D005915 6.5e-15 84.0 67 71.6
Aqoxy1G00442 Aquilegia oxysepala HOM05D004807 ORTHO05D005915 8.5e-15 83.6 68 70.6
PSO170G3481 Papaver somniferum HOM05D004807 ORTHO05D005915 8.5e-15 83.6 69 69.6
TAR623G0137 Trochodendron aralioides HOM05D004807 ORTHO05D005915 1.1e-14 83.2 68 69.1
Hund19221 Selenicereus undatus HOM05D004807 ORTHO05D005915 1.4e-14 82.8 66 68.2
ClCG10G017810 Citrullus lanatus HOM05D004807 ORTHO05D005915 3.2e-14 81.6 66 68.2
FAN05G3467 Fragaria x ananassa HOM05D004807 ORTHO05D005915 3.2e-14 81.6 67 67.2
FvH4_6g21460 Fragaria vesca HOM05D004807 ORTHO05D005915 4.2e-14 81.3 67 67.2
FAN02G2347 Fragaria x ananassa HOM05D004807 ORTHO05D005915 4.2e-14 81.3 67 67.2
FAN14G4845 Fragaria x ananassa HOM05D004807 ORTHO05D005915 4.2e-14 81.3 67 67.2
RcHm_v2.0_Chr3g0478641 Rosa chinensis HOM05D004807 ORTHO05D005915 4.2e-14 81.3 67 68.7
EL10Ac3g06848 Beta vulgaris HOM05D004807 ORTHO05D005915 5.5e-14 80.9 68 69.1
FAN05G1427 Fragaria x ananassa HOM05D004807 ORTHO05D005915 5.5e-14 80.9 67 67.2
FAN09G2962 Fragaria x ananassa HOM05D004807 ORTHO05D005915 2.1e-13 79.0 66 66.7
arahy.Tifrunner.gnm1.ann1.14IR3Z Arachis hypogaea HOM05D004807 ORTHO05D005915 6.7e-12 73.9 68 60.3
arahy.Tifrunner.gnm1.ann1.4PIV4R Arachis hypogaea HOM05D004807 ORTHO05D005915 6.7e-12 73.9 68 60.3
AUR62015288 Chenopodium quinoa HOM05D004807 ORTHO05D005915 8.8e-12 73.6 66 65.2
THA.LOC104826780 Tarenaya hassleriana HOM05D004807 ORTHO05D005915 8.8e-12 73.6 70 62.9
VMungo1383G3705 Vigna mungo HOM05D004807 ORTHO05D005915 8.8e-12 73.6 96 49.0
Aa31LG3G5560 Aethionema arabicum HOM05D004807 ORTHO05D005915 1.1e-11 73.2 68 58.8
Ca_09097_v3 Cicer arietinum L. HOM05D004807 ORTHO05D005915 1.5e-11 72.8 67 61.2
Lj1g0016427 Lotus japonicus HOM05D004807 ORTHO05D005915 1.5e-11 72.8 67 61.2
BcaB06g25560 Brassica carinata HOM05D004807 ORTHO05D005915 2.0e-11 72.4 64 64.1
BcaC05g29309 Brassica carinata HOM05D004807 ORTHO05D005915 2.0e-11 72.4 64 64.1
C05p55980 Brassica napus HOM05D004807 ORTHO05D005915 2.0e-11 72.4 64 64.1
BolC5t34266H Brassica oleracea HOM05D004807 ORTHO05D005915 2.0e-11 72.4 64 64.1
Sp3g10180 Schrenkiella parvula HOM05D004807 ORTHO05D005915 2.0e-11 72.4 64 64.1
BcaB04g18703 Brassica carinata HOM05D004807 ORTHO05D005915 2.5e-11 72.0 64 64.1
BcaC01g04068 Brassica carinata HOM05D004807 ORTHO05D005915 2.5e-11 72.0 64 64.1
A03p37390 Brassica napus HOM05D004807 ORTHO05D005915 2.5e-11 72.0 64 64.1
C03p45390 Brassica napus HOM05D004807 ORTHO05D005915 2.5e-11 72.0 64 64.1
BolC3t16806H Brassica oleracea HOM05D004807 ORTHO05D005915 2.5e-11 72.0 64 64.1
BraA03t12900Z Brassica rapa HOM05D004807 ORTHO05D005915 2.5e-11 72.0 64 64.1
AUR62026870 Chenopodium quinoa HOM05D004807 ORTHO05D005915 2.5e-11 72.0 66 63.6
Phvul.001G200200 Phaseolus vulgaris HOM05D004807 ORTHO05D005915 2.5e-11 72.0 97 49.5
Ah.04g153050 Amaranthus hybridus HOM05D004807 ORTHO05D005915 3.3e-11 71.6 68 61.8
Hma1.2p1_0516F.1_g170580 Hydrangea macrophylla HOM05D004807 ORTHO05D005915 3.3e-11 71.6 60 66.7
Medtr7g107350 Medicago truncatula HOM05D004807 ORTHO05D005915 4.3e-11 71.2 67 61.2
AL3G23560 Arabidopsis lyrata HOM05D004807 ORTHO05D005915 7.4e-11 70.5 64 64.1
Psat0s2035g0040 Pisum sativum HOM05D004807 ORTHO05D005915 7.4e-11 70.5 68 58.8
AT3G11960 Arabidopsis thaliana HOM05D004807 ORTHO05D005915 9.7e-11 70.1 64 64.1
Carub.0003s1129 Capsella rubella HOM05D004807 ORTHO05D005915 9.7e-11 70.1 64 64.1
unitig_0.g509 Utricularia gibba HOM05D004807 ORTHO05D005915 1.7e-10 69.3 67 62.7
A05p37420 Brassica napus HOM05D004807 ORTHO05D005915 3.7e-10 68.2 64 60.9
Thhalv10019900m.g Eutrema salsugineum HOM05D004807 ORTHO05D005915 3.7e-10 68.2 64 60.9
Glyma.19G204200 Glycine max HOM05D004807 ORTHO05D005915 3.7e-10 68.2 67 62.7
ATR0665G460 Amborella trichopoda HOM05D004807 ORTHO05D005915 4.8e-10 67.8 67 61.2
CARHR086510 Cardamine hirsuta HOM05D004807 ORTHO05D005915 1.1e-09 66.6 63 60.3
Lsat_1_v5_gn_2_58060 Lactuca sativa HOM05D004807 ORTHO05D005915 1.1e-09 66.6 69 60.9
Lalb_Chr25g0287671 Lupinus albus HOM05D004807 ORTHO05D005915 1.1e-09 66.6 77 51.9
Dinv25022 Davidia involucrata HOM05D004807 ORTHO05D005915 2.4e-09 65.5 40 85.0
TPR.G32304 Trifolium pratense HOM05D004807 ORTHO05D005915 5.3e-09 64.3 67 58.2
HanXRQChr14g0438891 Helianthus annuus HOM05D004807 ORTHO05D005915 9.1e-09 63.5 68 54.4
SEGI_25187 Sequoiadendron giganteum HOM05D004807 ORTHO05D005915 4.5e-08 61.2 100 46.0
Rhsim03G0002200 Rhododendron simsii HOM05D004807 ORTHO05D005915 1.0e-07 60.1 32 93.8
CDE05G3662 Ceratophyllum demersum HOM05D004807 ORTHO05D005915 1.3e-07 59.7 65 52.3
Pp3c24_19520 Physcomitrium patens HOM05D004807 ORTHO05D005915 5.0e-07 57.8 68 50.0
Os07g0203700 Oryza sativa ssp. japonica HOM05D004807 ORTHO05D005915 8.5e-07 57.0 68 54.4
Zm00001eb302880 Zea mays HOM05D004807 ORTHO05D005915 1.1e-06 56.6 66 51.5
AUR62032732 Chenopodium quinoa HOM05D004807 ORTHO05D005915 1.4e-06 56.2 53 62.3
HPP92_017552 Vanilla planifolia HOM05D004807 ORTHO05D005915 3.2e-06 55.1 65 49.2


User provided reference genes

Program Settings