Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 5.2e-215 750.7 375 100.0
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 4.9e-112 408.7 305 70.5
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.6e-99 367.1 292 65.4
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 7.6e-97 358.2 290 65.2
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 3.2e-95 352.8 292 64.0
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 8.7e-93 344.7 292 62.7
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 1.6e-91 340.5 291 60.1
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 3.6e-91 339.3 291 60.1
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 6.2e-91 338.6 291 60.1
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 4.0e-90 335.9 292 59.9
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 9.9e-89 331.3 292 59.9
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 1.7e-88 330.5 292 57.2
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 2.9e-88 329.7 292 58.6
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 4.9e-88 328.9 292 57.2
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 8.4e-88 328.2 292 58.9
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 1.1e-87 327.8 291 58.1
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 1.9e-87 327.0 292 58.2
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 2.4e-87 326.6 290 57.9
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 4.2e-87 325.9 290 57.9
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 7.1e-87 325.1 292 58.2
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 9.3e-87 324.7 292 57.5
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 9.3e-87 324.7 292 57.9
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 9.3e-87 324.7 292 57.9
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.2e-86 324.3 290 57.6
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 1.6e-86 323.9 292 55.8
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.6e-86 323.9 290 57.6
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 1.6e-86 323.9 288 57.6
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 2.1e-86 323.6 290 57.6
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 3.5e-86 322.8 292 58.2
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 7.9e-86 321.6 288 56.9
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.8e-85 320.5 292 57.5
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.8e-85 320.5 292 57.5
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 2.3e-85 320.1 292 56.8
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 2.3e-85 320.1 292 55.1
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.3e-85 320.1 288 57.6
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.0e-85 319.7 292 57.9
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 3.0e-85 319.7 306 55.6
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 3.9e-85 319.3 292 55.1
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 3.9e-85 319.3 292 57.9
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.9e-85 319.3 292 57.9
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 3.9e-85 319.3 292 57.2
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 5.1e-85 318.9 291 57.4
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 6.7e-85 318.5 292 57.9
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 8.7e-85 318.2 291 57.4
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 1.5e-84 317.4 290 56.6
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 2.5e-84 316.6 290 56.2
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 2.5e-84 316.6 290 55.2
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 5.6e-84 315.5 290 56.2
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 5.6e-84 315.5 286 56.6
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 9.6e-84 314.7 286 55.9
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 1.6e-83 313.9 289 57.1
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 1.6e-83 313.9 290 56.2
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 2.8e-83 313.2 291 56.0
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 3.7e-83 312.8 286 55.6
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 3.7e-83 312.8 291 56.7
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 4.8e-83 312.4 286 55.6
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 4.8e-83 312.4 288 55.9
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 6.2e-83 312.0 288 56.9
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 8.1e-83 311.6 288 56.2
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 1.1e-82 311.2 290 56.6
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 1.1e-82 311.2 307 53.7
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.4e-82 310.8 290 54.8
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 2.4e-82 310.1 291 56.0
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 3.1e-82 309.7 288 54.5
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 3.1e-82 309.7 292 54.5
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 3.1e-82 309.7 291 56.0
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 3.1e-82 309.7 290 54.8
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 4.0e-82 309.3 291 56.0
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 4.0e-82 309.3 291 55.7
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 5.3e-82 308.9 292 54.5
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 6.9e-82 308.5 292 54.1
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 6.9e-82 308.5 292 55.1
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 6.9e-82 308.5 292 55.5
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 1.5e-81 307.4 287 54.7
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 2.0e-81 307.0 288 53.8
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 2.6e-81 306.6 287 55.1
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 7.6e-81 305.1 303 53.1
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 1.0e-80 304.7 292 53.8
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 1.0e-80 304.7 292 53.8
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 1.0e-80 304.7 292 53.8
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 1.7e-80 303.9 292 53.4
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 1.7e-80 303.9 288 55.6
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.7e-80 303.9 286 55.2
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 2.2e-80 303.5 287 54.4
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 2.2e-80 303.5 292 53.4
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 2.2e-80 303.5 292 53.4
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 1.9e-79 300.4 290 55.5
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 5.5e-79 298.9 288 52.8
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 7.1e-79 298.5 226 66.8
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 1.2e-78 297.7 226 64.6
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 1.8e-77 293.9 292 50.0
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 3.3e-76 289.7 229 65.9
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 3.3e-76 289.7 292 49.3
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 3.7e-75 286.2 309 49.5
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 4.0e-74 282.7 293 50.2
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 5.3e-74 282.3 226 62.8
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 6.9e-74 282.0 240 60.4
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 6.5e-72 275.4 303 47.9
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 2.7e-70 270.0 292 50.0
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 6.7e-69 265.4 288 49.7
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 1.9e-68 263.8 284 47.9
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 6.3e-67 258.8 231 56.7
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.8e-66 257.3 286 48.3
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 3.1e-66 256.5 279 46.6
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 3.1e-66 256.5 279 47.3
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 5.3e-66 255.8 294 45.6
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 2.6e-65 253.4 202 61.9
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 4.5e-65 252.7 281 46.6
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 1.7e-64 250.8 279 47.0
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 2.5e-63 246.9 281 46.6
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 1.4e-61 241.1 280 45.4
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 8.8e-61 238.4 292 49.3
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 1.1e-60 238.0 229 48.9
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 1.1e-58 231.5 279 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 3.4e-57 226.5 279 43.4
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 7.7e-57 225.3 284 42.3
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 1.0e-56 224.9 190 61.1
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 2.5e-55 220.3 228 50.0
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 3.6e-54 216.5 278 41.4
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 6.1e-54 215.7 190 54.7
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 1.0e-53 214.9 288 39.6
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 2.3e-53 213.8 282 41.5
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 4.8e-51 206.1 219 51.1
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 7.7e-49 198.7 224 44.2
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 1.4e-42 177.9 281 34.9
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 1.2e-41 174.9 165 52.7
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 9.1e-34 148.7 126 60.3
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.3e-32 144.8 200 37.0
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 8.5e-32 142.1 290 32.1
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 9.8e-28 128.6 250 32.0
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.0e-24 118.6 156 39.7
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 5.6e-23 112.8 74 73.0
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 8.0e-22 109.0 99 51.5
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 1.0e-16 92.0 58 72.4
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 4.7e-14 83.2 122 37.7
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 7.8e-09 65.9 74 48.6
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 4.3e-07 60.1 33 81.8


User provided reference genes

Program Settings