Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11752 Vaccinium macrocarpon HOM05D009581 ORTHO05D004107 1.7e-280 968.8 531 100.0
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 4.7e-60 236.5 161 74.5
vmacro11750 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.6e-58 230.7 156 69.9
vmacro11751 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 7.5e-50 202.6 171 60.2
Rhsim06G0213500 Rhododendron simsii HOM05D000182 ORTHO05D004107 6.4e-49 199.5 171 59.1
Cc01_g12550 Coffea canephora HOM05D000051 ORTHO05D000015 3.1e-27 127.5 169 40.8
vmacro11759 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.4e-24 117.9 173 41.6
Cc05_g13410 Coffea canephora HOM05D000051 ORTHO05D000015 8.7e-22 109.4 173 34.7
Rhsim02G0022000 Rhododendron simsii HOM05D009581 ORTHO05D004107 2.5e-21 107.8 191 37.7
Rhsim12G0183900 Rhododendron simsii HOM05D009581 ORTHO05D004107 4.3e-21 107.1 182 38.5
Dinv15380 Davidia involucrata HOM05D009581 ORTHO05D004107 3.7e-20 104.0 184 39.7
Rhsim13G0158600 Rhododendron simsii HOM05D009581 ORTHO05D004107 4.8e-20 103.6 163 39.3
Dinv14020 Davidia involucrata HOM05D009581 ORTHO05D004107 3.1e-19 100.9 114 49.1
QL08p012322 Quercus lobata HOM05D000051 ORTHO05D000015 4.0e-19 100.5 169 38.5
Rhsim08G0179400 Rhododendron simsii HOM05D009581 ORTHO05D004107 4.0e-19 100.5 172 36.6
Cc08_g00360 Coffea canephora HOM05D000051 ORTHO05D000015 6.9e-19 99.8 174 37.9
Actinidia15955 Actinidia chinensis HOM05D000051 ORTHO05D000015 5.8e-18 96.7 165 37.0
Rhsim01G0142000 Rhododendron simsii HOM05D009581 ORTHO05D004107 3.8e-17 94.0 119 42.9
Dinv41030 Davidia involucrata HOM05D009581 ORTHO05D004107 4.9e-17 93.6 127 41.7
Cc01_g01510 Coffea canephora HOM05D000051 ORTHO05D000015 6.4e-17 93.2 175 33.7
Rhsim13G0148900 Rhododendron simsii HOM05D009581 ORTHO05D004107 1.1e-16 92.4 159 35.8
CSS0042786 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.4e-16 91.3 172 37.8
Dinv03803 Davidia involucrata HOM05D009581 ORTHO05D004107 2.4e-16 91.3 127 40.9
Dinv19502 Davidia involucrata HOM05D009581 ORTHO05D004107 2.4e-16 91.3 122 45.1
DCAR_017364 Daucus carota HOM05D000051 ORTHO05D000015 3.2e-16 90.9 175 33.7
Dinv05647 Davidia involucrata HOM05D009581 ORTHO05D004107 4.2e-16 90.5 114 45.6
CSS0042719 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 9.3e-16 89.4 172 37.2
Hma1.2p1_2873F.1_g329720 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 9.3e-16 89.4 122 41.8
Dinv39745 Davidia involucrata HOM05D009581 ORTHO05D004107 1.2e-15 89.0 126 40.5
RhsimUnG0031600 Rhododendron simsii HOM05D000051 ORTHO05D000015 1.2e-15 89.0 170 36.5
Dinv14622 Davidia involucrata HOM05D015629 ORTHO05D004107 1.6e-15 88.6 172 33.1
Dinv09274 Davidia involucrata HOM05D009581 ORTHO05D004107 2.1e-15 88.2 121 41.3
Hma1.2p1_0438F.1_g153120 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.1e-15 88.2 145 37.9
Cc01_g01520 Coffea canephora HOM05D000051 ORTHO05D000015 2.7e-15 87.8 175 33.7
Dinv22725 Davidia involucrata HOM05D009581 ORTHO05D004107 2.7e-15 87.8 183 33.9
Rhsim04G0020200 Rhododendron simsii HOM05D000051 ORTHO05D000015 3.5e-15 87.4 174 35.6
Dinv03120 Davidia involucrata HOM05D009581 ORTHO05D004107 6.0e-15 86.7 88 50.0
Dinv38793 Davidia involucrata HOM05D015629 ORTHO05D004107 1.0e-14 85.9 132 39.4
Actinidia05113 Actinidia chinensis HOM05D000051 ORTHO05D000015 2.3e-14 84.7 171 33.9
Actinidia35253 Actinidia chinensis HOM05D000051 ORTHO05D000015 3.9e-14 84.0 155 34.8
Actinidia18763 Actinidia chinensis HOM05D000051 ORTHO05D000015 6.7e-14 83.2 166 34.3
Rhsim08G0180300 Rhododendron simsii HOM05D009581 ORTHO05D004107 8.7e-14 82.8 127 40.2
Dinv38850 Davidia involucrata HOM05D009581 ORTHO05D004107 5.6e-13 80.1 109 41.3
Hma1.2p1_1609F.1_g293460 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 9.6e-13 79.3 169 33.1
Dinv32175 Davidia involucrata HOM05D015629 ORTHO05D004107 2.1e-12 78.2 180 35.6
Dinv38189 Davidia involucrata HOM05D000051 ORTHO05D000015 2.1e-12 78.2 170 33.5
COL.COLO4_35721 Corchorus olitorius HOM05D000051 ORTHO05D000015 3.7e-12 77.4 151 32.5
COL.COLO4_35728 Corchorus olitorius HOM05D000051 ORTHO05D000015 3.7e-12 77.4 167 35.3
QL08p012268 Quercus lobata HOM05D000051 ORTHO05D000015 6.2e-12 76.6 168 32.7
Dinv20164 Davidia involucrata HOM05D000051 ORTHO05D000015 1.8e-11 75.1 167 34.7
Duzib268G1144 Durio zibethinus HOM05D000051 ORTHO05D000015 5.3e-11 73.6 176 31.2
QL06p002351 Quercus lobata HOM05D000051 ORTHO05D000015 6.9e-11 73.2 168 31.0
QL08p012292 Quercus lobata HOM05D000051 ORTHO05D000015 9.0e-11 72.8 168 31.0
Dinv16180 Davidia involucrata HOM05D009581 ORTHO05D004107 2.6e-10 71.2 135 36.3
GSVIVG01038076001 Vitis vinifera HOM05D000051 ORTHO05D000015 2.6e-10 71.2 172 29.7
Rhsim06G0214100 Rhododendron simsii HOM05D000051 ORTHO05D000015 4.5e-10 70.5 169 32.5
AL5G28550 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 1.0e-09 69.3 144 31.2
QL08p012409 Quercus lobata HOM05D000051 ORTHO05D000015 1.0e-09 69.3 128 35.2
Dinv16177 Davidia involucrata HOM05D009581 ORTHO05D004107 1.3e-09 68.9 135 34.8
Dinv29333 Davidia involucrata HOM05D000017 ORTHO05D000013 2.2e-09 68.2 128 35.2
BcaB04g18226 Brassica carinata HOM05D000051 ORTHO05D000015 4.9e-09 67.0 158 33.5
COL.COLO4_35727 Corchorus olitorius HOM05D000051 ORTHO05D000015 4.9e-09 67.0 112 39.3
Dinv03017 Davidia involucrata HOM05D015629 ORTHO05D004107 4.9e-09 67.0 109 38.5
Dinv11292 Davidia involucrata HOM05D015629 ORTHO05D004107 4.9e-09 67.0 138 38.4
Sp6g18250 Schrenkiella parvula HOM05D000051 ORTHO05D000015 4.9e-09 67.0 151 29.1
RcHm_v2.0_Chr5g0028391 Rosa chinensis HOM05D000051 ORTHO05D000015 6.5e-09 66.6 164 30.5
FAN11G0701 Fragaria x ananassa HOM05D000051 ORTHO05D000015 8.4e-09 66.2 164 31.1
Hma1.2p1_1218F.1_g267660 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 8.4e-09 66.2 114 36.8
C04p56380 Brassica napus HOM05D000051 ORTHO05D000015 1.1e-08 65.9 146 30.1
MD11G1275400 Malus domestica HOM05D000051 ORTHO05D000015 1.4e-08 65.5 179 27.9
Rhsim07G0063700 Rhododendron simsii HOM05D000051 ORTHO05D000015 1.9e-08 65.1 168 33.3
Gohir.A09G213658 Gossypium hirsutum HOM05D030405 ORTHO05D000015 2.5e-08 64.7 179 29.1
Thhalv10027210m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 3.2e-08 64.3 173 31.8
AUR62011656 Chenopodium quinoa HOM05D000051 ORTHO05D000015 4.2e-08 63.9 149 33.6
DCAR_004437 Daucus carota HOM05D000051 ORTHO05D000015 4.2e-08 63.9 186 30.6
Dinv15912 Davidia involucrata HOM05D025573 ORTHO05D004107 4.2e-08 63.9 137 30.7
FvH4_3g17060 Fragaria vesca HOM05D000051 ORTHO05D000015 4.2e-08 63.9 164 30.5
HanXRQChr17g0566541 Helianthus annuus HOM05D000051 ORTHO05D000015 4.2e-08 63.9 170 31.2
RcHm_v2.0_Chr5g0059951 Rosa chinensis HOM05D000051 ORTHO05D000015 4.2e-08 63.9 168 31.5
Hma1.2p1_0472F.1_g159930 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 5.5e-08 63.5 96 36.5
AL5G30872 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 7.1e-08 63.2 158 31.6
FAN11G1258 Fragaria x ananassa HOM05D000051 ORTHO05D000015 7.1e-08 63.2 175 30.3
Gohir.A02G008900 Gossypium hirsutum HOM05D000051 ORTHO05D000015 7.1e-08 63.2 159 31.4
A04p20610 Brassica napus HOM05D000051 ORTHO05D000015 9.3e-08 62.8 150 30.0
HanXRQChr17g0566531 Helianthus annuus HOM05D000051 ORTHO05D000015 9.3e-08 62.8 170 30.6
Lj1A868T32 Lonicera japonica HOM05D000051 ORTHO05D000015 9.3e-08 62.8 165 32.7
Lj8A145G72 Lonicera japonica HOM05D000051 ORTHO05D000015 9.3e-08 62.8 166 28.3
Medtr8g062270 Medicago truncatula HOM05D000051 ORTHO05D000015 9.3e-08 62.8 160 29.4
AUR62028057 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.2e-07 62.4 176 30.7
Lj2A948G37 Lonicera japonica HOM05D000051 ORTHO05D000015 1.2e-07 62.4 169 29.6
AT3G50710 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 1.6e-07 62.0 160 28.8
COL.COLO4_35717 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.6e-07 62.0 156 30.1
Prupe.4G160800 Prunus persica HOM05D000051 ORTHO05D000015 1.6e-07 62.0 171 29.2
EL10Ac2g04778 Beta vulgaris HOM05D000051 ORTHO05D000015 2.1e-07 61.6 158 32.3
BcaC02g08279 Brassica carinata HOM05D000051 ORTHO05D000015 2.7e-07 61.2 154 28.6
C04p56400 Brassica napus HOM05D000051 ORTHO05D000015 2.7e-07 61.2 154 28.6
Ciclev10018327m.g Citrus clementina HOM05D000051 ORTHO05D000015 2.7e-07 61.2 106 35.8
Thhalv10027284m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 2.7e-07 61.2 167 33.5
Gorai.006G235300 Gossypium raimondii HOM05D030405 ORTHO05D000015 2.7e-07 61.2 190 29.5
Thecc.07G080700 Theobroma cacao HOM05D000051 ORTHO05D000015 2.7e-07 61.2 171 29.2
FvH4_3g17190 Fragaria vesca HOM05D000051 ORTHO05D000015 3.5e-07 60.8 175 29.7
Prupe.4G158900 Prunus persica HOM05D000051 ORTHO05D000015 3.5e-07 60.8 169 30.8
RcHm_v2.0_Chr5g0028551 Rosa chinensis HOM05D000051 ORTHO05D000015 3.5e-07 60.8 174 29.9
CSS0008598 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.6e-07 60.5 84 40.5
CARHR270090 Cardamine hirsuta HOM05D000051 ORTHO05D000015 4.6e-07 60.5 162 29.6
HanXRQChr17g0564811 Helianthus annuus HOM05D000051 ORTHO05D000015 4.6e-07 60.5 166 30.1
AL8G32130 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 6.0e-07 60.1 161 31.1
BolC4t27168H Brassica oleracea HOM05D000051 ORTHO05D000015 6.0e-07 60.1 149 28.2
BraA04t17635Z Brassica rapa HOM05D000051 ORTHO05D000015 6.0e-07 60.1 154 31.2
FAN25G3081 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.0e-07 60.1 164 30.5
Thecc.04G151900 Theobroma cacao HOM05D000051 ORTHO05D000015 6.0e-07 60.1 174 28.2
Actinidia06264 Actinidia chinensis HOM05D000051 ORTHO05D000015 7.9e-07 59.7 81 48.1
A08p11140 Brassica napus HOM05D000051 ORTHO05D000015 7.9e-07 59.7 173 30.1
BraA08t33111Z Brassica rapa HOM05D000051 ORTHO05D000015 7.9e-07 59.7 173 30.1
Migut.M00832 Erythranthe guttata HOM05D000051 ORTHO05D000015 7.9e-07 59.7 166 29.5
RcHm_v2.0_Chr5g0059961 Rosa chinensis HOM05D000051 ORTHO05D000015 7.9e-07 59.7 162 31.5
GSVIVG01038063001 Vitis vinifera HOM05D000051 ORTHO05D000015 7.9e-07 59.7 126 34.1
BcaB06g28113 Brassica carinata HOM05D000051 ORTHO05D000015 1.0e-06 59.3 147 29.9
FAN16G1794 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.0e-06 59.3 175 29.1
RcHm_v2.0_Chr5g0028521 Rosa chinensis HOM05D000051 ORTHO05D000015 1.0e-06 59.3 173 28.9
Migut.M00538 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.3e-06 58.9 169 29.6
MD11G1266800 Malus domestica HOM05D000051 ORTHO05D000015 1.3e-06 58.9 166 27.7
Prupe.4G161200 Prunus persica HOM05D000051 ORTHO05D000015 1.3e-06 58.9 81 43.2
Lsat_1_v5_gn_4_29041 Lactuca sativa HOM05D000051 ORTHO05D000015 1.8e-06 58.5 173 28.9
BolC8t48209H Brassica oleracea HOM05D000051 ORTHO05D000015 2.3e-06 58.2 158 31.0
HanXRQChr17g0564851 Helianthus annuus HOM05D000051 ORTHO05D000015 2.3e-06 58.2 153 30.1
Hma1.2p1_1051F.1_g252080 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.3e-06 58.2 161 30.4
Sc13g0005570 Simmondsia chinensis HOM05D000051 ORTHO05D000015 2.3e-06 58.2 165 30.3
AUR62013955 Chenopodium quinoa HOM05D000051 ORTHO05D000015 3.0e-06 57.8 134 29.9
COL.COLO4_16357 Corchorus olitorius HOM05D000051 ORTHO05D000015 3.0e-06 57.8 170 29.4
Dinv36403 Davidia involucrata HOM05D025573 ORTHO05D004107 3.0e-06 57.8 137 27.7
Migut.M00549 Erythranthe guttata HOM05D000051 ORTHO05D000015 3.0e-06 57.8 167 30.5
Thhalv10011064m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 3.0e-06 57.8 145 27.6
FAN14G1913 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.0e-06 57.8 170 31.8
Hund23290 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.0e-06 57.8 165 30.3
Atru.chr10.2197 Acer truncatum HOM05D048497 ORTHO05D037870 3.9e-06 57.4 80 43.8
Carub.0008s0938 Capsella rubella HOM05D000051 ORTHO05D000015 3.9e-06 57.4 150 28.0
AUR62020896 Chenopodium quinoa HOM05D000051 ORTHO05D000015 3.9e-06 57.4 126 31.7
Dinv26585 Davidia involucrata HOM05D015629 ORTHO05D004107 3.9e-06 57.4 118 34.7
PSO170G3960 Papaver somniferum HOM05D000051 ORTHO05D000015 3.9e-06 57.4 166 28.9
Atru.chr10.2193 Acer truncatum HOM05D048497 ORTHO05D037870 5.1e-06 57.0 78 43.6
Actinidia23256 Actinidia chinensis HOM05D000017 ORTHO05D000013 5.1e-06 57.0 131 27.5
AT4G14096 Arabidopsis thaliana HOM05D000689 ORTHO05D000015 5.1e-06 57.0 169 27.8
CARHR148060 Cardamine hirsuta HOM05D000051 ORTHO05D000015 5.1e-06 57.0 152 27.6
Hma1.2p1_2904F.1_g330080 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 5.1e-06 57.0 99 33.3
Lj3C54T1 Lonicera japonica HOM05D000051 ORTHO05D014235 5.1e-06 57.0 169 30.8
QL11p045589 Quercus lobata HOM05D000051 ORTHO05D000015 5.1e-06 57.0 163 28.8
RcHm_v2.0_Chr5g0028411 Rosa chinensis HOM05D000051 ORTHO05D000015 5.1e-06 57.0 171 31.0
DCAR_024431 Daucus carota HOM05D000051 ORTHO05D000015 6.7e-06 56.6 91 40.7
MD11G1265300 Malus domestica HOM05D000051 ORTHO05D000015 6.7e-06 56.6 174 31.0
PSO210G5140 Papaver somniferum HOM05D000051 ORTHO05D000015 6.7e-06 56.6 164 26.8
AUR62022216 Chenopodium quinoa HOM05D000051 ORTHO05D000015 8.7e-06 56.2 171 29.8
PSO210G0477 Papaver somniferum HOM05D000051 ORTHO05D000015 8.7e-06 56.2 95 36.8


User provided reference genes

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