Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.3e-83 311.6 154 100.0
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.8e-45 185.7 155 67.7
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.8e-45 185.7 155 67.7
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.2e-43 180.3 154 68.2
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.6e-43 179.1 153 67.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 5.8e-43 177.9 152 65.8
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 1.7e-42 176.4 154 65.6
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.2e-42 176.0 155 65.8
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 6.4e-42 174.5 153 66.7
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 8.3e-42 174.1 154 64.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 8.3e-42 174.1 152 63.8
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 1.1e-41 173.7 153 66.0
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 2.4e-41 172.6 153 67.3
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 2.4e-41 172.6 153 68.0
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.1e-41 171.8 155 63.9
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 4.1e-41 171.8 155 63.9
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 5.4e-41 171.4 153 65.4
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 5.4e-41 171.4 152 63.8
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 7.1e-41 171.0 153 64.7
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 7.1e-41 171.0 153 64.1
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 7.1e-41 171.0 153 64.1
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 9.2e-41 170.6 150 66.0
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 9.2e-41 170.6 155 62.6
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.2e-40 170.2 156 65.4
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.2e-40 170.2 155 65.8
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.2e-40 170.2 153 63.4
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.6e-40 169.9 153 64.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.1e-40 169.5 156 64.7
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.1e-40 169.5 153 64.7
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 2.7e-40 169.1 155 66.5
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 3.5e-40 168.7 154 63.6
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 4.6e-40 168.3 155 65.2
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.6e-40 168.3 158 59.5
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 4.6e-40 168.3 154 63.6
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 4.6e-40 168.3 155 65.2
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 7.8e-40 167.5 155 63.9
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 7.8e-40 167.5 154 63.6
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.0e-39 167.2 153 64.7
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.0e-39 167.2 153 62.7
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.0e-39 167.2 153 63.4
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.3e-39 166.8 155 65.2
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.7e-39 166.4 152 64.5
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 2.3e-39 166.0 155 64.5
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 2.3e-39 166.0 152 64.5
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 3.0e-39 165.6 155 64.5
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 3.9e-39 165.2 154 63.6
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 3.9e-39 165.2 147 63.3
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 3.9e-39 165.2 154 62.3
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.1e-39 164.9 152 59.2
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.6e-39 164.5 153 63.4
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.6e-39 164.5 154 64.3
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 8.6e-39 164.1 155 61.3
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 8.6e-39 164.1 155 61.3
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 8.6e-39 164.1 153 64.7
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 8.6e-39 164.1 155 63.2
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.1e-38 163.7 152 63.2
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.5e-38 163.3 152 63.8
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-38 163.3 153 64.1
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-38 163.3 153 64.1
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.5e-38 163.3 155 63.9
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.9e-38 162.9 155 63.2
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.9e-38 162.9 153 61.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.9e-38 162.9 146 63.0
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 2.5e-38 162.5 154 63.0
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 2.5e-38 162.5 152 63.8
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.5e-38 162.5 157 58.6
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 3.3e-38 162.2 155 60.6
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 3.3e-38 162.2 155 60.6
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 3.3e-38 162.2 155 60.6
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 4.3e-38 161.8 155 60.6
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.3e-38 161.8 155 63.2
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 4.3e-38 161.8 152 60.5
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 5.6e-38 161.4 154 59.7
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 5.6e-38 161.4 155 61.9
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 9.5e-38 160.6 156 60.3
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.2e-37 160.2 155 60.0
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.2e-37 160.2 153 60.8
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.2e-37 160.2 155 61.3
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.2e-37 160.2 155 62.6
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.2e-37 160.2 155 62.6
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.2e-37 160.2 154 60.4
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.6e-37 159.8 156 60.3
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.6e-37 159.8 156 60.3
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.6e-37 159.8 154 62.3
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 2.1e-37 159.5 154 59.1
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 2.1e-37 159.5 153 59.5
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.8e-37 159.1 156 59.6
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.8e-37 159.1 156 59.6
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 3.6e-37 158.7 154 59.7
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 3.6e-37 158.7 156 59.6
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 3.6e-37 158.7 154 59.7
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 3.6e-37 158.7 154 59.7
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 3.6e-37 158.7 154 59.7
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 3.6e-37 158.7 154 59.7
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 4.7e-37 158.3 156 59.6
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 4.7e-37 158.3 155 62.6
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 8.1e-37 157.5 155 58.7
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 8.1e-37 157.5 156 59.0
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 8.1e-37 157.5 155 61.9
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 8.1e-37 157.5 158 60.1
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.4e-36 156.8 156 59.0
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.4e-36 156.8 152 59.9
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 1.4e-36 156.8 153 60.1
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.4e-36 156.8 150 61.3
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.4e-36 156.8 156 59.0
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 1.8e-36 156.4 154 60.4
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 4.0e-36 155.2 152 60.5
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 5.2e-36 154.8 155 58.1
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 8.9e-36 154.1 155 60.6
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.2e-35 153.7 152 58.6
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-35 153.7 152 58.6
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.2e-35 153.7 155 59.4
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 2.0e-35 152.9 155 60.6
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.6e-35 152.5 158 58.9
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 3.4e-35 152.1 154 59.1
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 3.4e-35 152.1 148 60.1
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 4.4e-35 151.8 152 56.6
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 5.8e-35 151.4 154 60.4
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.3e-34 150.2 153 58.8
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 1.3e-34 150.2 154 57.1
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.7e-34 149.8 153 58.2
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.7e-34 149.8 131 64.1
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.9e-34 149.1 155 57.4
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 3.7e-34 148.7 147 58.5
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 6.4e-34 147.9 156 58.3
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.1e-33 147.1 149 61.1
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 2.4e-33 146.0 155 55.5
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 2.4e-33 146.0 155 55.5
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 7.1e-33 144.4 126 63.5
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.7e-32 142.5 136 58.1
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.5e-32 142.1 154 55.8
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 7.8e-32 141.0 154 54.5
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 7.8e-32 141.0 154 55.2
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.0e-31 140.6 150 55.3
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.7e-31 139.8 150 56.0
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.1e-30 137.1 154 53.2
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.5e-30 136.0 154 53.2
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 3.3e-30 135.6 154 55.2
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 3.3e-30 135.6 68 95.6
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 7.3e-30 134.4 156 56.4
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.1e-29 132.9 160 49.4
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 3.6e-29 132.1 130 60.0
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.2e-27 127.1 134 53.7
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.6e-27 124.4 151 50.3
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 3.8e-26 122.1 89 68.5
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.2e-24 117.1 155 47.7
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.6e-24 116.7 155 44.5
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.5e-24 115.5 157 45.9
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 4.6e-24 115.2 155 47.7
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.5e-22 109.4 124 54.0
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 4.3e-22 108.6 128 52.3
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 5.6e-22 108.2 160 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.1e-21 106.3 158 44.3
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 6.2e-21 104.8 53 88.7
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 9.0e-20 100.9 65 70.8
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 5.8e-19 98.2 156 47.4
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 3.8e-18 95.5 155 47.7
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.4e-17 93.6 154 44.2
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.2e-17 92.4 103 57.3
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 2.1e-16 89.7 78 52.6
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 1.5e-14 83.6 76 53.9
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.9e-14 83.2 105 54.3
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.5e-11 73.6 104 48.1
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.5e-06 57.0 32 90.6
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 4.3e-06 55.5 58 60.3


User provided reference genes

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