Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 1.9e-150 535.8 272 100.0
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 7.2e-97 357.8 238 79.8
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 9.1e-76 287.7 240 67.9
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 4.5e-75 285.4 243 68.3
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 5.9e-75 285.0 282 61.7
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 4.2e-73 278.9 218 69.7
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 4.1e-68 262.3 313 52.7
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 7.7e-67 258.1 244 63.5
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 8.3e-61 238.0 242 59.5
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.1e-60 237.7 274 51.8
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.2e-60 236.1 281 52.0
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 4.1e-60 235.7 281 51.2
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 7.0e-60 235.0 242 57.4
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.6e-59 233.8 238 58.8
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.7e-58 230.3 281 51.2
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 1.7e-58 230.3 244 58.2
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.9e-58 229.2 281 50.9
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 1.9e-57 226.9 287 49.8
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 9.5e-57 224.6 245 56.7
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 1.6e-56 223.8 310 46.8
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 1.6e-56 223.8 310 46.8
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 8.0e-56 221.5 273 51.6
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 8.0e-56 221.5 245 55.1
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 3.1e-55 219.5 239 56.1
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 5.2e-55 218.8 268 51.5
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 8.9e-55 218.0 237 57.8
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 2.0e-54 216.9 245 55.9
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.6e-54 216.5 239 56.5
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 2.6e-54 216.5 239 56.1
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 3.4e-54 216.1 241 53.1
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 3.4e-54 216.1 240 53.3
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 4.4e-54 215.7 241 54.4
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 1.7e-53 213.8 243 54.7
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 2.2e-53 213.4 243 54.7
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 2.9e-53 213.0 241 53.9
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 4.9e-53 212.2 242 55.4
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 6.4e-53 211.8 235 52.8
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 7.0e-52 208.4 238 52.1
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 9.2e-52 208.0 241 53.9
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 4.6e-51 205.7 241 54.8
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 1.1e-49 201.1 240 54.2
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 1.2e-48 197.6 240 52.5
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 6.8e-47 191.8 252 49.6
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 8.9e-47 191.4 246 50.0
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 4.4e-46 189.1 240 50.4
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 9.8e-46 188.0 247 50.6
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 1.7e-45 187.2 248 50.4
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 2.2e-45 186.8 314 40.8
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 3.7e-45 186.0 241 47.3
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 3.7e-45 186.0 198 52.0
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 3.7e-45 186.0 239 50.6
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 6.4e-45 185.3 210 53.3
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 8.3e-45 184.9 210 54.3
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 1.9e-44 183.7 235 47.7
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 3.2e-44 183.0 274 44.2
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 4.1e-44 182.6 250 47.6
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 3.5e-43 179.5 218 49.1
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.5e-43 179.5 210 49.5
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.5e-43 179.5 210 49.5
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 3.5e-43 179.5 239 47.3
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 1.0e-42 177.9 236 46.2
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 1.3e-42 177.6 248 44.4
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 1.3e-42 177.6 245 48.6
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 2.3e-42 176.8 198 53.0
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 6.6e-42 175.3 238 47.5
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 1.5e-41 174.1 242 46.3
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 1.9e-41 173.7 238 43.7
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 4.3e-41 172.6 239 45.6
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 7.3e-41 171.8 238 46.2
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 2.8e-40 169.9 237 44.7
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 3.6e-40 169.5 222 46.4
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 1.1e-39 167.9 210 51.9
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 8.9e-39 164.9 202 49.5
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 1.2e-38 164.5 241 45.6
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 2.0e-38 163.7 238 44.5
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 2.0e-38 163.7 210 51.4
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 8.4e-37 158.3 241 44.4
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 1.9e-36 157.1 231 45.9
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 5.4e-36 155.6 237 48.5
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 9.2e-36 154.8 233 42.1
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 1.6e-35 154.1 235 41.7
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.3e-34 151.0 244 43.9
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 1.5e-33 147.5 249 44.6
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 1.6e-32 144.1 290 39.0
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 1.1e-31 141.4 211 44.1
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 7.6e-30 135.2 246 43.1
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 3.8e-29 132.9 208 44.2
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.1e-28 131.3 206 44.7
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.4e-28 131.0 252 41.3
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.9e-28 130.6 242 41.7
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 3.5e-27 126.3 249 41.0
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 3.0e-26 123.2 196 44.4
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 3.9e-26 122.9 246 38.6
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 2.5e-25 120.2 203 39.9
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 2.5e-25 120.2 203 39.9
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 3.3e-25 119.8 162 45.1
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 7.3e-25 118.6 250 38.0
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 7.3e-25 118.6 250 38.0
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 7.3e-25 118.6 200 39.5
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.8e-24 116.7 199 41.2
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 6.2e-24 115.5 113 66.4
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 1.1e-23 114.8 248 37.9
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 1.1e-23 114.8 247 38.5
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 1.1e-23 114.8 247 38.5
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.4e-23 113.6 236 35.2
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 4.5e-22 109.4 242 33.9
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 1.7e-21 107.5 250 37.6
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 8.4e-21 105.1 252 35.3
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 3.2e-20 103.2 206 39.3
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 7.1e-20 102.1 287 31.7
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 9.3e-20 101.7 273 35.2
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 2.1e-19 100.5 250 36.4
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 6.0e-19 99.0 237 34.6
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 2.3e-18 97.1 251 34.7
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 3.9e-18 96.3 271 33.9
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 4.8e-16 89.4 188 37.8
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 1.8e-15 87.4 192 37.5
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 1.2e-14 84.7 236 28.4
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 9.9e-14 81.6 127 45.7
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 1.7e-13 80.9 134 36.6
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 4.9e-13 79.3 198 31.8
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 2.4e-12 77.0 109 54.1
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 9.3e-12 75.1 208 31.7
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 1.6e-11 74.3 210 30.0
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 1.3e-08 64.7 61 44.3
Thecc.06G154100 Theobroma cacao HOM05D004468 ORTHO05D011136 8.1e-08 62.0 38 73.7
Gohir.D10G039800 Gossypium hirsutum HOM05D004468 ORTHO05D011136 1.1e-07 61.6 38 71.1
CiPaw.09G126700 Carya illinoinensis HOM05D004468 ORTHO05D011136 2.4e-07 60.5 38 73.7
Sed0010006 Sechium edule HOM05D004468 ORTHO05D011136 2.4e-07 60.5 38 71.1
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 3.1e-07 60.1 337 26.4
Gohir.A10G039000 Gossypium hirsutum HOM05D004468 ORTHO05D011136 3.1e-07 60.1 38 68.4
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 3.1e-07 60.1 286 26.9
Manes.15G118900 Manihot esculenta HOM05D004468 ORTHO05D011136 5.3e-07 59.3 38 73.7
Sc26g0000240 Simmondsia chinensis HOM05D001755 ORTHO05D001665 5.3e-07 59.3 209 28.7
Gohir.A05G150100 Gossypium hirsutum HOM05D004468 ORTHO05D011136 6.9e-07 58.9 38 65.8
Gohir.D05G152700 Gossypium hirsutum HOM05D004468 ORTHO05D011136 6.9e-07 58.9 38 65.8
Potri.011G080100 Populus trichocarpa HOM05D004468 ORTHO05D011136 6.9e-07 58.9 38 71.1
Gorai.009G156800 Gossypium raimondii HOM05D004468 ORTHO05D011136 1.5e-06 57.8 36 69.4
Lsat_1_v5_gn_1_2200 Lactuca sativa HOM05D001755 ORTHO05D001665 1.5e-06 57.8 220 25.9
HPP92_004103 Vanilla planifolia HOM05D001755 ORTHO05D001665 1.5e-06 57.8 218 26.6
Cc10_g15590 Coffea canephora HOM05D001755 ORTHO05D001665 2.0e-06 57.4 269 25.7
TAR376G0504 Trochodendron aralioides HOM05D001755 ORTHO05D001665 2.0e-06 57.4 252 25.4
HPP92_004086 Vanilla planifolia HOM05D001755 ORTHO05D001665 2.0e-06 57.4 218 26.6
CsaV3_6G051550 Cucumis sativus L. HOM05D004468 ORTHO05D011136 3.4e-06 56.6 51 54.9
ECA246G0388 Erigeron canadensis HOM05D001755 ORTHO05D001665 3.4e-06 56.6 247 25.5
Sed0005922 Sechium edule HOM05D004468 ORTHO05D011136 3.4e-06 56.6 38 71.1
Prupe.4G077000 Prunus persica HOM05D004468 ORTHO05D011136 4.5e-06 56.2 38 68.4
Aqoxy6G01464 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 5.8e-06 55.8 237 27.8
CiPaw.10G093600 Carya illinoinensis HOM05D004468 ORTHO05D011136 7.6e-06 55.5 38 65.8
HanXRQChr05g0163561 Helianthus annuus HOM05D001755 ORTHO05D001665 1.0e-05 55.1 222 25.2
Manes.17G067500 Manihot esculenta HOM05D004468 ORTHO05D011136 1.0e-05 55.1 38 65.8
Sed0024443 Sechium edule HOM05D001755 ORTHO05D001665 1.0e-05 55.1 240 27.1


User provided reference genes

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