Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 7.3e-207 723.8 399 100.0
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.6e-161 573.2 426 79.8
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.1e-154 550.4 426 75.6
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 6.7e-152 541.2 426 74.9
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.8e-149 533.1 426 74.4
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.7e-139 500.0 426 70.2
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 2.9e-139 499.2 426 69.0
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 3.8e-139 498.8 426 70.2
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 2.5e-138 496.1 426 69.5
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 1.2e-137 493.8 426 69.0
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.1e-137 493.0 426 69.0
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.1e-137 493.0 426 69.0
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 2.7e-137 492.7 426 69.2
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 3.6e-137 492.3 471 64.5
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 4.7e-137 491.9 426 69.0
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.7e-137 491.9 426 68.8
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.7e-137 491.9 426 68.8
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 6.1e-137 491.5 426 69.0
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 6.1e-137 491.5 426 69.0
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 8.0e-137 491.1 426 66.7
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 8.0e-137 491.1 426 66.4
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 8.0e-137 491.1 426 67.1
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 1.8e-136 490.0 426 69.5
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 3.0e-136 489.2 426 68.3
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 4.0e-136 488.8 426 68.1
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 4.0e-136 488.8 426 68.8
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 6.8e-136 488.0 426 66.0
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 8.8e-136 487.6 426 68.8
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.2e-135 487.3 424 66.7
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 2.0e-135 486.5 426 68.3
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 5.7e-135 485.0 426 68.1
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.2e-134 483.0 427 68.9
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 3.7e-134 482.3 426 67.8
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 4.8e-134 481.9 426 67.1
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 1.8e-133 479.9 442 66.5
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 4.1e-133 478.8 426 67.4
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 4.1e-133 478.8 426 65.3
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 7.0e-133 478.0 426 65.7
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.6e-132 476.9 426 65.5
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 2.7e-132 476.1 426 66.7
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 7.7e-132 474.6 426 66.7
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 1.3e-131 473.8 436 67.0
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 2.2e-131 473.0 426 66.0
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 2.9e-131 472.6 426 66.0
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 6.5e-131 471.5 427 66.7
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 3.2e-130 469.2 426 64.1
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.2e-129 467.2 449 64.1
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 5.2e-128 461.8 429 65.3
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.2e-127 460.7 426 66.0
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 2.6e-127 459.5 426 65.3
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 4.4e-127 458.8 426 61.5
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.7e-126 456.8 426 60.8
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 1.7e-126 456.8 426 62.4
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.7e-126 456.8 426 65.3
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 2.2e-126 456.4 426 59.2
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 2.8e-126 456.1 426 59.2
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 4.9e-126 455.3 402 67.7
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 4.9e-126 455.3 426 59.2
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 6.3e-126 454.9 428 63.3
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 9.1e-125 451.1 410 64.9
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.0e-124 449.9 426 60.3
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 3.5e-124 449.1 426 58.2
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 4.5e-124 448.7 426 58.5
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 7.7e-124 448.0 428 59.1
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 3.8e-123 445.7 402 67.2
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 3.8e-123 445.7 426 64.3
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 3.3e-122 442.6 426 59.2
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 4.2e-122 442.2 426 64.6
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.2e-121 440.7 426 56.6
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.2e-121 440.7 426 63.6
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 2.3e-120 436.4 428 63.8
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 2.3e-120 436.4 426 63.1
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 3.0e-120 436.0 427 62.8
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 4.0e-120 435.6 428 63.8
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 5.2e-120 435.3 425 63.8
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.2e-119 434.1 426 57.5
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.6e-119 433.0 426 57.3
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 2.2e-118 429.9 426 56.8
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-118 429.9 426 56.8
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 2.9e-118 429.5 426 54.7
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 2.9e-118 429.5 431 57.1
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 6.4e-118 428.3 426 63.6
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.4e-117 427.2 427 60.9
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 2.7e-116 422.9 426 63.1
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 7.3e-114 414.8 410 56.8
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 7.3e-114 414.8 426 61.7
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.6e-113 413.7 441 59.4
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 8.9e-112 407.9 412 54.6
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 2.0e-111 406.8 432 60.4
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.7e-110 403.7 355 63.7
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 2.9e-110 402.9 419 61.1
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 6.4e-110 401.7 427 59.3
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 4.1e-109 399.1 430 58.6
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 9.5e-106 387.9 427 52.7
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 6.2e-105 385.2 426 60.3
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.2e-97 360.9 404 58.7
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 9.2e-93 344.7 319 67.7
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.6e-92 344.0 421 48.5
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 2.4e-88 330.1 339 64.3
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 3.9e-83 312.8 324 55.9
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 6.6e-83 312.0 383 51.7
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 4.3e-82 309.3 414 47.8
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.1e-77 294.7 426 44.4
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 9.3e-69 265.0 426 42.5
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 2.7e-68 263.5 430 41.9
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 4.6e-68 262.7 334 49.7
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 6.7e-67 258.8 431 39.9
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.2e-60 238.0 278 49.6
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 2.6e-55 220.3 206 57.8
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 7.6e-55 218.8 206 57.3
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 5.5e-53 212.6 328 43.9
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.5e-50 204.5 153 73.2
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 3.4e-47 193.4 419 43.0
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 4.5e-47 193.0 165 60.0
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 6.1e-36 156.0 229 44.1
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.3e-33 148.3 572 27.1
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 2.8e-33 147.1 324 34.9
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.3e-30 138.3 96 77.1
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 2.2e-30 137.5 125 64.8
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 6.5e-30 136.0 71 83.1
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 8.5e-30 135.6 122 60.7
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.1e-29 135.2 457 28.7
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.7e-25 121.3 101 62.4
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 3.1e-24 117.1 424 25.7
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 7.0e-24 115.9 130 64.6
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 4.5e-23 113.2 439 28.0
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 7.7e-23 112.5 134 44.0
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 6.5e-22 109.4 130 42.3
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.9e-21 107.8 125 50.4
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.2e-18 98.6 102 50.0
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 4.4e-18 96.7 50 82.0
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 1.3e-17 95.1 134 37.3
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.3e-17 95.1 80 66.2
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 1.1e-16 92.0 101 46.5
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.2e-14 84.3 51 80.4
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 2.2e-14 84.3 46 89.1
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 5.0e-14 83.2 92 52.2
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.5e-13 80.9 48 64.6
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 3.2e-13 80.5 65 58.5
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 7.2e-13 79.3 44 88.6
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 5.2e-11 73.2 96 40.6
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 2.6e-10 70.9 42 85.7
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 9.8e-10 68.9 39 79.5
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.7e-09 68.2 77 44.2
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 1.6e-07 61.6 37 78.4


User provided reference genes

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