Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 2.1e-239 832.0 437 100.0
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 1.9e-184 649.4 382 89.3
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.0e-162 574.7 382 79.6
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 9.6e-160 567.4 382 79.6
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 2.1e-159 566.2 382 79.6
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 8.4e-148 527.7 381 74.8
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 9.3e-147 524.2 381 74.8
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 7.4e-144 514.6 389 71.5
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 3.1e-142 509.2 381 72.4
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 5.5e-139 498.4 381 68.8
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.3e-137 493.8 380 70.3
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 4.1e-134 482.3 381 70.1
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 2.6e-133 479.6 403 66.7
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.6e-133 479.6 383 67.9
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 2.2e-132 476.5 384 66.4
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.2e-132 476.5 381 68.2
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 3.8e-132 475.7 378 68.3
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 6.5e-132 474.9 381 67.7
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 8.5e-132 474.6 383 67.4
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 8.5e-132 474.6 377 69.5
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.4e-131 473.8 381 67.2
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 4.2e-131 472.2 383 65.8
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 4.2e-131 472.2 386 66.8
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 7.2e-131 471.5 377 67.4
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 3.6e-130 469.2 382 67.3
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 4.6e-130 468.8 377 67.4
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.3e-129 466.5 382 67.0
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 6.7e-129 464.9 385 66.2
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 3.3e-128 462.6 377 64.7
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.3e-128 462.2 375 67.5
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 9.7e-128 461.1 381 68.0
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 9.7e-128 461.1 414 62.6
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.3e-127 460.7 375 67.2
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.3e-127 460.7 379 66.0
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.7e-127 460.3 375 66.4
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 2.8e-127 459.5 377 65.8
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 3.7e-127 459.1 386 67.1
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.8e-127 458.8 377 64.5
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 4.8e-127 458.8 381 67.2
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 6.3e-127 458.4 381 65.9
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 8.2e-127 458.0 381 67.2
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.1e-126 457.6 386 65.0
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.8e-126 456.8 375 66.4
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 5.3e-126 455.3 380 64.2
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.3e-126 455.3 381 66.9
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 6.9e-126 454.9 382 65.7
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 6.9e-126 454.9 382 65.4
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.0e-125 453.4 382 66.0
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.0e-125 453.4 382 66.0
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 3.4e-125 452.6 380 66.8
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 4.5e-125 452.2 380 66.8
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 2.2e-124 449.9 380 65.5
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.9e-124 449.5 382 65.7
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 3.8e-124 449.1 382 65.4
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 5.0e-124 448.7 381 63.3
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.2e-123 446.0 392 63.8
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.2e-123 445.7 392 63.5
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 7.2e-123 444.9 382 63.6
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 4.7e-122 442.2 397 64.0
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 7.9e-122 441.4 385 64.7
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.0e-121 441.0 380 63.9
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.0e-121 441.0 380 64.2
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 3.9e-121 439.1 397 63.5
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 8.8e-121 438.0 384 64.8
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.6e-120 436.4 380 63.4
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.3e-120 436.0 377 62.6
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 5.7e-120 435.3 446 56.3
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.2e-119 433.3 380 64.5
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 3.7e-119 432.6 424 57.1
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 1.4e-118 430.6 380 61.1
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 2.0e-117 426.8 377 61.3
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 1.3e-116 424.1 384 62.8
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 1.9e-115 420.2 383 62.4
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 6.1e-114 415.2 359 65.7
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.8e-113 413.7 384 59.6
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.2e-113 412.1 370 62.2
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.6e-112 409.8 384 59.6
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 4.4e-112 409.1 380 61.8
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 5.7e-112 408.7 379 60.7
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.2e-109 401.0 392 59.9
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 6.5e-108 395.2 384 59.6
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 9.4e-107 391.3 382 59.2
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.2e-106 391.0 384 59.4
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 4.7e-106 389.0 385 59.0
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 8.0e-106 388.3 383 58.5
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 4.4e-104 382.5 405 53.3
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 7.5e-104 381.7 390 55.9
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.4e-102 377.5 381 55.9
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.8e-102 377.1 377 56.0
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 7.0e-102 375.2 401 55.1
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.0e-101 373.6 382 56.5
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 2.7e-101 373.2 379 57.5
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 3.8e-100 369.4 398 55.0
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-99 367.9 381 54.6
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 4.0e-97 359.4 384 54.4
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.0e-96 357.1 385 52.2
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 5.7e-96 355.5 450 48.9
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 7.5e-96 355.1 380 55.0
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 6.3e-95 352.1 380 55.5
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 1.2e-93 347.8 376 54.5
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.7e-93 346.7 385 55.3
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 3.5e-93 346.3 399 51.4
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 5.9e-93 345.5 399 51.4
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.5e-91 340.1 377 53.8
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 4.2e-91 339.3 399 51.9
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 2.8e-87 326.6 397 49.9
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 5.9e-85 318.9 398 48.5
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 1.3e-84 317.8 398 48.2
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 9.5e-83 311.6 396 48.7
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.8e-81 307.4 306 57.5
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 5.2e-81 305.8 396 47.7
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 5.2e-81 305.8 396 47.7
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-80 304.7 396 48.2
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 5.8e-80 302.4 392 47.4
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 7.8e-77 292.0 261 62.8
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 9.5e-75 285.0 250 63.2
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.8e-73 280.8 408 41.9
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.3e-73 280.4 299 52.5
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.1e-67 261.5 380 44.7
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.0e-64 250.8 182 69.8
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 1.4e-62 244.6 456 38.4
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 4.0e-57 226.5 260 51.2
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 5.2e-57 226.1 211 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 1.2e-56 224.9 361 39.6
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 3.3e-43 180.3 410 32.9
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 8.1e-42 175.6 178 57.3
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 2.0e-40 171.0 122 75.4
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.3e-39 168.3 118 72.9
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.4e-17 95.1 67 65.7
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 2.4e-17 94.4 438 24.2
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.1e-17 94.0 115 49.6
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 4.1e-17 93.6 118 50.0
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 6.9e-17 92.8 56 78.6
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 7.7e-16 89.4 57 73.7
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 5.0e-15 86.7 410 24.4
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.7e-13 80.9 518 24.7
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 3.3e-11 73.9 48 75.0
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 5.7e-11 73.2 60 63.3
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 4.8e-10 70.1 61 62.3
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-09 68.9 61 62.3
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 6.9e-09 66.2 58 62.1


User provided reference genes

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