Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 9.5e-114 414.1 305 100.0
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 4.9e-102 375.2 304 92.8
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 6.4e-102 374.8 302 93.7
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.9e-101 373.2 304 90.5
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 2.4e-101 372.9 304 90.8
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 3.2e-101 372.5 304 91.8
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.6e-100 370.2 303 91.1
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 1.6e-100 370.2 303 91.1
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 2.7e-100 369.4 303 90.8
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 3.5e-100 369.0 303 90.8
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 7.8e-100 367.9 303 90.8
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.3e-99 367.1 304 90.8
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.7e-99 366.7 303 90.8
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-99 366.7 304 90.1
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-99 366.7 304 90.1
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.7e-99 366.7 304 90.8
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.7e-99 366.7 304 91.1
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.7e-99 366.7 304 91.1
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.3e-99 366.3 304 90.5
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.3e-99 366.3 304 90.1
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.3e-99 366.3 304 91.1
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.0e-99 365.9 304 90.1
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 5.0e-99 365.2 304 90.5
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 5.0e-99 365.2 339 60.5
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 6.6e-99 364.8 304 91.4
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 8.6e-99 364.4 304 92.1
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.1e-98 364.0 304 91.1
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 2.5e-98 362.8 304 89.8
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.5e-98 362.8 304 90.5
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.3e-98 362.5 303 90.4
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 3.3e-98 362.5 304 89.8
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 5.6e-98 361.7 304 90.8
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 5.6e-98 361.7 303 89.8
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.6e-98 361.7 304 89.5
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 7.3e-98 361.3 304 89.5
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 7.3e-98 361.3 303 88.8
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 7.3e-98 361.3 304 89.8
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 9.5e-98 360.9 304 89.5
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 9.5e-98 360.9 304 89.5
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.2e-97 360.5 304 90.1
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-97 360.5 304 89.1
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 1.2e-97 360.5 304 90.1
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.6e-97 360.1 304 88.5
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 3.6e-97 359.0 304 87.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.6e-97 359.0 304 89.1
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 3.6e-97 359.0 304 89.8
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 8.1e-97 357.8 304 89.5
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 8.1e-97 357.8 304 89.5
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.1e-96 357.5 303 89.8
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.4e-96 357.1 304 89.5
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.3e-96 356.3 304 89.8
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 2.3e-96 356.3 304 89.5
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 2.3e-96 356.3 302 88.7
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 5.2e-96 355.1 343 82.2
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.5e-95 353.6 304 88.5
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 3.4e-95 352.4 304 88.2
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 3.4e-95 352.4 304 87.8
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 4.4e-95 352.1 304 88.8
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 5.8e-95 351.7 303 87.5
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 7.5e-95 351.3 304 88.5
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.3e-94 350.5 304 86.8
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.3e-94 350.5 304 87.8
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.9e-94 349.4 304 85.9
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 4.9e-94 348.6 304 87.5
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 6.4e-94 348.2 303 87.5
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 6.4e-94 348.2 304 87.2
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 6.4e-94 348.2 304 87.2
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.1e-93 347.4 304 85.2
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.4e-93 347.1 304 87.8
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.4e-93 347.1 304 85.5
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.4e-93 347.1 304 88.2
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.9e-93 346.7 304 67.4
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.2e-93 345.9 304 87.8
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 3.2e-93 345.9 304 86.2
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 4.1e-93 345.5 304 86.8
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 5.4e-93 345.1 304 60.9
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 9.2e-93 344.4 304 85.5
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 1.2e-92 344.0 304 87.8
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.3e-91 340.5 325 82.8
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.7e-91 340.1 189 87.3
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 2.5e-90 336.3 303 85.8
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 7.3e-90 334.7 302 85.4
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.6e-89 332.4 304 85.9
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 6.2e-89 331.6 189 85.7
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 3.1e-88 329.3 304 83.2
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 3.1e-88 329.3 304 83.2
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 4.0e-88 328.9 189 84.1
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 4.0e-88 328.9 304 83.6
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 6.8e-88 328.2 304 82.9
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 8.9e-88 327.8 304 82.9
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 3.4e-87 325.9 304 82.6
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 7.6e-87 324.7 304 80.9
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 4.9e-86 322.0 304 81.9
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 4.9e-86 322.0 304 80.9
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 8.4e-86 321.2 304 83.2
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.1e-85 320.9 304 81.6
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.1e-85 320.9 304 81.6
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.1e-85 320.9 304 81.6
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 1.1e-85 320.9 304 81.6
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 2.4e-85 319.7 304 81.6
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.2e-85 319.3 388 70.1
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.2e-85 319.3 388 70.1
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 4.1e-85 318.9 304 80.9
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 7.1e-85 318.2 304 81.6
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.2e-84 317.4 304 80.6
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 6.0e-84 315.1 304 80.9
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 3.9e-83 312.4 306 64.1
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 6.6e-83 311.6 305 80.3
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 8.6e-83 311.2 310 79.7
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 6.2e-81 305.1 300 83.0
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 1.9e-77 293.5 305 81.0
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 3.5e-76 289.3 189 76.2
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.9e-74 283.5 307 67.8
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 4.5e-71 272.3 306 76.1
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 9.9e-71 271.2 305 75.4
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 8.7e-67 258.1 306 70.9
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 7.4e-58 228.4 294 73.8
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.3e-57 227.6 294 73.8
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-57 227.3 129 87.6
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 7.4e-50 201.8 154 64.9
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 3.8e-46 189.5 112 83.0
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 6.1e-44 182.2 297 64.6
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.1e-42 177.9 111 79.3
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 4.8e-41 172.6 304 39.1
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-40 171.4 101 81.2
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 6.9e-40 168.7 311 37.9
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-39 166.4 98 83.7
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 5.0e-38 162.5 172 50.0
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.0e-38 162.5 92 84.8
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 8.2e-33 145.2 84 84.5
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-32 142.5 83 84.3
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.9e-31 139.0 84 82.1
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-30 137.5 82 79.3
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.9e-29 134.0 81 77.8
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-29 133.3 81 77.8
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-27 127.9 73 82.2
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.1e-26 124.8 227 37.4
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-26 124.4 67 83.6
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.7e-26 122.5 101 64.4
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 2.8e-25 120.2 93 66.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.3e-25 119.0 69 82.6
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.2e-23 114.8 167 38.9
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.9e-23 112.5 61 86.9
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-22 111.3 61 85.2
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 4.2e-21 106.3 155 93.5
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-20 104.4 60 83.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 4.0e-19 99.8 154 90.9
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.8e-11 72.4 60 65.0
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 4.4e-10 69.7 188 30.9
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 2.4e-08 63.9 43 72.1
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.7e-07 60.5 30 90.0
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.0e-06 58.5 29 89.7
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.0e-06 58.5 30 86.7
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 5.0e-06 56.2 30 80.0
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 6.5e-06 55.8 31 77.4
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 8.6e-06 55.5 30 83.3


User provided reference genes

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