Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.2e-71 273.1 139 100.0
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 2.5e-53 212.2 139 83.5
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.4e-51 206.5 143 77.6
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.8e-51 206.1 142 78.9
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 8.9e-51 203.8 142 77.5
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 8.9e-51 203.8 142 77.5
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.5e-50 203.0 144 75.7
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 4.4e-50 201.4 142 76.8
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.5e-50 200.7 142 77.5
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 9.8e-50 200.3 142 77.5
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.2e-49 199.1 142 74.6
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 3.7e-49 198.4 142 75.4
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.7e-49 198.4 143 75.5
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 3.7e-49 198.4 144 74.3
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 3.7e-49 198.4 142 76.1
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 8.3e-49 197.2 142 75.4
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 74.6
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.1e-48 196.8 143 76.2
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.1e-48 196.8 141 76.6
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.1e-48 196.8 144 74.3
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 1.4e-48 196.4 139 78.4
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 1.4e-48 196.4 142 73.9
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.8e-48 196.1 141 73.8
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.4e-48 195.7 142 73.9
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.4e-48 195.7 142 73.9
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 75.2
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 73.0
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 4.1e-48 194.9 142 73.9
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 4.1e-48 194.9 141 74.5
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.4e-48 194.5 142 74.6
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 7.0e-48 194.1 144 75.0
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 7.0e-48 194.1 143 75.5
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 7.0e-48 194.1 142 73.9
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 7.0e-48 194.1 142 75.4
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 9.2e-48 193.7 141 73.8
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 9.2e-48 193.7 140 74.3
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 9.2e-48 193.7 142 73.9
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-47 193.4 142 73.9
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.7e-47 192.2 143 72.7
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 75.4
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 74.6
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 72.5
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 3.5e-47 191.8 142 73.9
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.5e-47 191.8 135 76.3
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 3.5e-47 191.8 142 73.2
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 4.6e-47 191.4 143 72.7
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 5.9e-47 191.0 143 72.0
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.9e-47 191.0 142 72.5
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 5.9e-47 191.0 142 74.6
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 5.9e-47 191.0 141 75.2
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 5.9e-47 191.0 141 75.2
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 7.8e-47 190.7 143 72.7
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 7.8e-47 190.7 143 72.7
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 7.8e-47 190.7 142 72.5
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.0e-46 190.3 143 72.7
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.0e-46 190.3 139 74.8
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.7e-46 189.5 139 74.8
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.7e-46 189.5 141 71.6
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.7e-46 189.5 137 74.5
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.3e-46 189.1 143 71.3
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 2.3e-46 189.1 140 76.4
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.3e-46 189.1 142 73.9
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 2.3e-46 189.1 142 73.2
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 3.0e-46 188.7 142 73.2
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.0e-46 188.7 137 75.9
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 5.0e-46 188.0 143 72.7
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 5.0e-46 188.0 143 72.7
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 143 72.7
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 5.0e-46 188.0 143 72.7
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 6.6e-46 187.6 142 71.1
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.6e-46 187.6 142 71.1
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 8.6e-46 187.2 142 71.1
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 8.6e-46 187.2 143 72.7
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 1.1e-45 186.8 141 73.0
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.5e-45 186.4 143 70.6
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.5e-45 186.4 143 72.0
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.5e-45 186.4 143 71.3
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.5e-45 186.4 143 72.0
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.5e-45 186.4 143 69.9
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.9e-45 186.0 141 71.6
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 2.5e-45 185.7 143 72.0
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 3.3e-45 185.3 143 73.4
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 3.3e-45 185.3 143 73.4
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 3.3e-45 185.3 143 72.0
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 4.3e-45 184.9 143 69.9
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 7.3e-45 184.1 143 70.6
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 7.3e-45 184.1 143 72.7
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 7.3e-45 184.1 143 72.7
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 7.3e-45 184.1 143 72.7
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 7.3e-45 184.1 143 72.7
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 7.3e-45 184.1 143 72.7
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 7.3e-45 184.1 142 71.8
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 7.3e-45 184.1 143 72.0
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 9.5e-45 183.7 142 71.8
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.6e-44 183.0 142 70.4
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.6e-44 183.0 141 73.0
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.1e-44 182.6 143 72.0
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.1e-44 182.6 143 72.0
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.1e-44 182.6 143 72.0
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.1e-44 182.6 143 71.3
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.1e-44 182.6 143 71.3
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 3.6e-44 181.8 142 71.8
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 4.7e-44 181.4 143 71.3
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.7e-44 181.4 146 68.5
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 6.2e-44 181.0 143 70.6
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 6.2e-44 181.0 141 68.8
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 6.2e-44 181.0 158 65.2
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.2e-44 181.0 140 70.7
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 8.0e-44 180.6 141 73.8
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 8.0e-44 180.6 138 71.0
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.0e-43 180.3 143 70.6
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.8e-43 179.5 143 70.6
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.1e-43 178.7 141 67.4
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 8.9e-43 177.2 143 70.6
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 8.9e-43 177.2 144 68.1
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.2e-42 176.8 133 69.2
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 2.0e-42 176.0 133 69.9
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 2.6e-42 175.6 144 69.4
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 3.4e-42 175.3 144 68.8
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 3.4e-42 175.3 138 70.3
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 4.4e-42 174.9 141 70.2
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 4.4e-42 174.9 136 70.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.3e-41 173.3 145 64.1
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 4.9e-41 171.4 141 66.7
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 8.3e-41 170.6 146 67.1
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.9e-40 169.5 146 66.4
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 4.1e-40 168.3 145 65.5
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 4.1e-40 168.3 145 65.5
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 9.2e-40 167.2 135 68.9
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 7.8e-39 164.1 134 70.1
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.0e-38 163.7 134 67.2
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.7e-38 162.9 141 62.4
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.7e-38 162.9 144 65.3
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 6.6e-38 161.0 143 64.3
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.1e-37 160.2 143 66.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.2e-36 156.8 155 61.9
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.1e-36 156.0 144 60.4
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 8.1e-36 154.1 93 84.9
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 8.9e-35 150.6 146 59.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 9.8e-34 147.1 161 54.7
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.3e-33 146.7 111 70.3
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 6.4e-33 144.4 108 72.2
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.9e-32 142.9 129 61.2
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.2e-31 140.2 138 55.8
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 6.0e-31 137.9 137 56.9
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 3.9e-30 135.2 100 68.0
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 9.5e-29 130.6 133 58.6
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.8e-27 126.3 142 55.6
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.8e-27 126.3 141 53.2
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.2e-26 123.6 140 54.3
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.0e-26 122.9 120 55.8
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.6e-26 120.9 116 59.5
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 1.3e-25 120.2 149 49.7
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.7e-25 119.8 145 50.3
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.7e-25 119.8 139 51.8
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 1.9e-24 116.3 96 69.8
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.5e-21 106.7 91 67.0
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.2e-20 103.6 65 72.3
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.6e-20 103.2 51 90.2
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 3.4e-18 95.5 85 63.5
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 3.8e-17 92.0 90 51.1
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 5.4e-16 88.2 50 84.0
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.0e-14 82.4 87 57.5
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 1.9e-13 79.7 82 53.7
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 3.3e-13 79.0 83 60.2
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.3e-06 57.0 32 90.6


User provided reference genes

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